CmaCh00G001470 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase
LocationCma_Chr00 : 9704432 .. 9705724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAATATAAATCGAAGTTTCCTTTATCGAAAATTGAATTACGTCAGCTACAACAGAAAATAGAAGATGACAGTATGAAGTTCGACGAGAGTTCAATATATAATGTTGTTCCTAACTTTATTAAAATCTTAATACAGAAGGATAAATTGAGTGCAAAGGATTATATAATTGAGAAATTAGCTGATGATGATGACATAAAAATGCTTGAAGAGTTCGGTCAATATACTCTAGAGGTATTAATTATTCACGTTCTGGGAATTGTTTTCAACACATATGAAAGTATGGTTCGTGCAGCTTCTTTAATTAATCAACTCGACTCTTCTGTACGTACACATTATAGGTTATTAAAATTCCACTCCTCTAAAAAGAGCATTTCTAATGTTCATATGTCTGATAAAATGGAAAAGTCTGAGACTTTTTCCTTCGGTGTCTTCTTACTCGAGTTTATGGAGGAGCGGGGATTGGTAAGTTCTATTACAATGGAATCCTTTGGTAGTGGTGTTAAGAAAAAGTCGAAAGGTGGCTATTATTATGAAAGCAATCTATTCATTGTCTGTAATTTTGATGTTACTTTACTTCCGATCAAGCTCAACCTTCCTATGATATGCCCACCTCTTGATTGGATGAGTGCGTGTCCGCCGAATCAATCTCCTAGATATCTCTCAGATCTATCAGGGGGTTACCTAAGTGGACCGACTGGTGAGATTTATGATCGTTACCGCTTATTAAGTTCTGGTGACCTAAATCACTTTTATATATATGTAGGTTATTCTTCTTATTATAAGAATGATTACAAGTCTATGTGTAAAGTCATGAATGCGCTGCAGCGCCCTTTACAATCAACAGTGATTGGTTGAACCATTTAATGGAAAATGAAGACTATTTTGTTGACCATGGTCTTCTTATGCCACAATTTCTGGAAACGATGAATATCAGAGATGTTAGCCCCATTCTTAGAGATTTCCACATGAAGGATGAGGTAATATACAATGAATTTTCCTTTAACGATTTGTTACATACAGTGATTAAGACTATCCAGCGTTCACGCTATGAACGATTAATTCTCAATCTCGCAAGAGACTACGATGGCTATAAATTTTGCCTACCCGCCTTTCTTGACTTCAGAGGTAGAATTTATCGCTGTGGTATTTTGCATTTTCACGAGTGTGATCTTGCACGAAGCCTGATTGTGTTTGCTGATCATAATCATGAGAAGGAGGAGATAAAGTGTAATTCTTATATAAGAGATGAAATTAGCTTATCAACATTCTTCCATTTTAAGTCTTTAA

mRNA sequence

ATGGAAGAATATAAATCGAAGTTTCCTTTATCGAAAATTGAATTACGTCAGCTACAACAGAAAATAGAAGATGACAGTATGAAGTTCGACGAGAGTTCAATATATAATGTTGTTCCTAACTTTATTAAAATCTTAATACAGAAGGATAAATTGAGTGCAAAGGATTATATAATTGAGAAATTAGCTGATGATGATGACATAAAAATGCTTGAAGAGTTCGGTCAATATACTCTAGAGGTATTAATTATTCACGTTCTGGGAATTGTTTTCAACACATATGAAAGTATGGTTCGTGCAGCTTCTTTAATTAATCAACTCGACTCTTCTGTACGTACACATTATAGGTTATTAAAATTCCACTCCTCTAAAAAGAGCATTTCTAATGTTCATATGTCTGATAAAATGGAAAAGTCTGAGACTTTTTCCTTCGGTGTCTTCTTACTCGAGTTTATGGAGGAGCGGGGATTGGTAATGATTAAGACTATCCAGCGTTCACGCTATGAACGATTAATTCTCAATCTCGCAAGAGACTACGATGGCTATAAATTTTGCCTACCCGCCTTTCTTGACTTCAGAGGTAGAATTTATCGCTGTGGTATTTTGCATTTTCACGAGTGTGATCTTGCACGAAGCCTGATTGTGTTTGCTGATCATAATCATGAGAAGGAGGAGATAAAGTCTTATCAACATTCTTCCATTTTAAGTCTTTAA

Coding sequence (CDS)

ATGGAAGAATATAAATCGAAGTTTCCTTTATCGAAAATTGAATTACGTCAGCTACAACAGAAAATAGAAGATGACAGTATGAAGTTCGACGAGAGTTCAATATATAATGTTGTTCCTAACTTTATTAAAATCTTAATACAGAAGGATAAATTGAGTGCAAAGGATTATATAATTGAGAAATTAGCTGATGATGATGACATAAAAATGCTTGAAGAGTTCGGTCAATATACTCTAGAGGTATTAATTATTCACGTTCTGGGAATTGTTTTCAACACATATGAAAGTATGGTTCGTGCAGCTTCTTTAATTAATCAACTCGACTCTTCTGTACGTACACATTATAGGTTATTAAAATTCCACTCCTCTAAAAAGAGCATTTCTAATGTTCATATGTCTGATAAAATGGAAAAGTCTGAGACTTTTTCCTTCGGTGTCTTCTTACTCGAGTTTATGGAGGAGCGGGGATTGGTAATGATTAAGACTATCCAGCGTTCACGCTATGAACGATTAATTCTCAATCTCGCAAGAGACTACGATGGCTATAAATTTTGCCTACCCGCCTTTCTTGACTTCAGAGGTAGAATTTATCGCTGTGGTATTTTGCATTTTCACGAGTGTGATCTTGCACGAAGCCTGATTGTGTTTGCTGATCATAATCATGAGAAGGAGGAGATAAAGTCTTATCAACATTCTTCCATTTTAAGTCTTTAA

Protein sequence

MEEYKSKFPLSKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKMLEEFGQYTLEVLIIHVLGIVFNTYESMVRAASLINQLDSSVRTHYRLLKFHSSKKSISNVHMSDKMEKSETFSFGVFLLEFMEERGLVMIKTIQRSRYERLILNLARDYDGYKFCLPAFLDFRGRIYRCGILHFHECDLARSLIVFADHNHEKEEIKSYQHSSILSL
Homology
[Close]
BLAST of CmaCh00G001470 vs. Swiss-Prot
Match: YM23_MAIZE (Uncharacterized 33.9 kDa protein in mitochondrial linear 2.3 KB plasmid OS=Zea mays PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-12
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 14  ELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKMLEEF 73
           ELR++Q +IE  ++ FDE S++            KD+ SA+DY+++KL DD D  ++   
Sbjct: 178 ELREIQTQIEHLTIHFDEGSVHESAGQLKGKFFNKDRQSARDYLLDKLKDDKDKDIVRGM 237

Query: 74  GQYTLEVLIIHVLGIVFNTY---ESMVRAASLINQLDSSVRTHY 115
           G YTLE + IHVL  +FN +   ++ V AA+LI++LD + +T Y
Sbjct: 238 GTYTLECVAIHVLSKLFNVFSLEKTSVLAAALISELDITAKTEY 281

[Close]
BLAST of CmaCh00G001470 vs. Swiss-Prot
Match: RPOP_MAIZE (Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.0e-10
Identity = 37/114 (32.46%), Postives = 67/114 (58.77%), Query Frame = 1 

Query: 14  ELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKMLEEF 73
           EL+ +Q KIE  +M F E+++Y  +       I  D+ +AKDY+++KL   DD+ ++   
Sbjct: 130 ELKGIQTKIERMTMYFYEANVYESLGQLKNKFINIDEQTAKDYLLDKLEKPDDLDIVRAM 189

Query: 74  GQYTLEVLIIHVLGIVFNTY---ESMVRAASLINQLDSSVRTHYRLLKFHSSKK 125
           G YTLE +++ VL   FN +   ++ V+ A+L+++LDS+ +  Y  +     K+
Sbjct: 190 GTYTLECIVVFVLSKQFNVFALDKASVQVATLVSELDSAAKIEYNRIIAEDRKR 243

[Close]
BLAST of CmaCh00G001470 vs. TrEMBL
Match: A0A101M3N5_PICGL (RNA polymerase OS=Picea glauca GN=rpo PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 63/117 (53.85%), Postives = 75/117 (64.10%), Query Frame = 1 

Query: 107 DSSVRTHYRLLKFHSSK--KSISNV----HMSDKMEKSETFSFGVFLLEFMEERGLVMIK 166
           DS V +   + +F SS   K +SN+    HM D++ K +  SF   L          + K
Sbjct: 225 DSFVESGLLMPRFLSSMNIKDVSNLLREFHMKDEVIK-KLCSFSELLR--------TLSK 284

Query: 167 TIQRSRYERLILNLARDYDGYKFCLPAFLDFRGRIYRCGILHFHECDLARSLIVFAD 218
            IQRSRYE LI+ LA+ YDGY F LPAFLDFRGRIYR G+LHFHE DLARSLIVFAD
Sbjct: 285 NIQRSRYENLIMKLAQAYDGYHFDLPAFLDFRGRIYRSGVLHFHERDLARSLIVFAD 332

[Close]
BLAST of CmaCh00G001470 vs. TrEMBL
Match: M7ZNX0_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_06156 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.1e-17
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 1 

Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 73  SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 132

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 133 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 192

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKTIQRSRYER 176
                   S K +     + K EK +     +  G +LL+FM ER ++ I T +    E 
Sbjct: 193 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHISTDRGVTKED 252

[Close]
BLAST of CmaCh00G001470 vs. TrEMBL
Match: Q332P2_WHEAT (Orf349 protein OS=Triticum aestivum GN=orf349 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1 

Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKMQCHYDIGKYLLQFMIERNVLHIST 272

[Close]
BLAST of CmaCh00G001470 vs. TrEMBL
Match: B6VJT2_VITVI (DNA-directed RNA polymerase OS=Vitis vinifera GN=RNA_pol PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 62/171 (36.26%), Postives = 101/171 (59.06%), Query Frame = 1 

Query: 5   KSKFPLSKIELRQLQQKIEDDSMKFDE-SSIYNVVPNFIKILIQKDKLSAKDYIIEKLAD 64
           K K   ++ EL  +Q  IED + K+D+  +IY + P+ IKI+I KD+L+AK+Y+ +    
Sbjct: 104 KDKDSFTEEELISIQTSIEDATFKYDDIKNIYQLTPDLIKIIISKDELTAKEYLKKCKLT 163

Query: 65  DDDIKMLEEFGQYTLEVLIIHVLGIVFNTYESM--VRAASLINQLDSSVRTHYRLLKFHS 124
            +D+  LE F QYTLE +II+V G++FN  + +  VR ++LI  LD+ VR+  +LLK ++
Sbjct: 164 KNDLLTLEYFDQYTLEAIIIYVFGVLFNCIQELPAVRVSTLIEHLDTYVRSQAKLLKGYT 223

Query: 125 SKKSISNVH------------------MSDKMEKSETFSFGVFLLEFMEER 155
           S++  S  H                   +DKM+ +  ++FG FL+EF+  R
Sbjct: 224 SEERPSTKHEINSDDTSSNVKAEENEMANDKMQNN--YAFGAFLVEFLVNR 272

[Close]
BLAST of CmaCh00G001470 vs. TrEMBL
Match: W5XJM2_TRITD (Orf349 OS=Triticum turgidum subsp. durum PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1 

Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHIST 272

[Close]
BLAST of CmaCh00G001470 vs. NCBI nr
Match: gi|973607413|gb|KUM50494.1| (RNA polymerase (mitochondrion) [Picea glauca])

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 63/117 (53.85%), Postives = 75/117 (64.10%), Query Frame = 1 

Query: 107 DSSVRTHYRLLKFHSSK--KSISNV----HMSDKMEKSETFSFGVFLLEFMEERGLVMIK 166
           DS V +   + +F SS   K +SN+    HM D++ K +  SF   L          + K
Sbjct: 225 DSFVESGLLMPRFLSSMNIKDVSNLLREFHMKDEVIK-KLCSFSELLR--------TLSK 284

Query: 167 TIQRSRYERLILNLARDYDGYKFCLPAFLDFRGRIYRCGILHFHECDLARSLIVFAD 218
            IQRSRYE LI+ LA+ YDGY F LPAFLDFRGRIYR G+LHFHE DLARSLIVFAD
Sbjct: 285 NIQRSRYENLIMKLAQAYDGYHFDLPAFLDFRGRIYRSGVLHFHERDLARSLIVFAD 332

[Close]
BLAST of CmaCh00G001470 vs. NCBI nr
Match: gi|474308422|gb|EMS61822.1| (hypothetical protein TRIUR3_06156 [Triticum urartu])

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 1 

Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 73  SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 132

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 133 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 192

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKTIQRSRYER 176
                   S K +     + K EK +     +  G +LL+FM ER ++ I T +    E 
Sbjct: 193 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHISTDRGVTKED 252

[Close]
BLAST of CmaCh00G001470 vs. NCBI nr
Match: gi|578888294|gb|AHI16397.1| (orf349 (mitochondrion) [Triticum turgidum subsp. durum])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1 

Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHIST 272

[Close]
BLAST of CmaCh00G001470 vs. NCBI nr
Match: gi|224365624|ref|YP_002608352.1| (DNA-dependent RNA polymerase [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 62/171 (36.26%), Postives = 101/171 (59.06%), Query Frame = 1 

Query: 5   KSKFPLSKIELRQLQQKIEDDSMKFDE-SSIYNVVPNFIKILIQKDKLSAKDYIIEKLAD 64
           K K   ++ EL  +Q  IED + K+D+  +IY + P+ IKI+I KD+L+AK+Y+ +    
Sbjct: 104 KDKDSFTEEELISIQTSIEDATFKYDDIKNIYQLTPDLIKIIISKDELTAKEYLKKCKLT 163

Query: 65  DDDIKMLEEFGQYTLEVLIIHVLGIVFNTYESM--VRAASLINQLDSSVRTHYRLLKFHS 124
            +D+  LE F QYTLE +II+V G++FN  + +  VR ++LI  LD+ VR+  +LLK ++
Sbjct: 164 KNDLLTLEYFDQYTLEAIIIYVFGVLFNCIQELPAVRVSTLIEHLDTYVRSQAKLLKGYT 223

Query: 125 SKKSISNVH------------------MSDKMEKSETFSFGVFLLEFMEER 155
           S++  S  H                   +DKM+ +  ++FG FL+EF+  R
Sbjct: 224 SEERPSTKHEINSDDTSSNVKAEENEMANDKMQNN--YAFGAFLVEFLVNR 272

[Close]
BLAST of CmaCh00G001470 vs. NCBI nr
Match: gi|578888264|gb|AHI16368.1| (orf349 (mitochondrion) [Triticum turgidum subsp. durum])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1 

Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHIST 272

The following BLAST results are available for this feature:
BLAST of CmaCh00G001470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YM23_MAIZE2.6e-1239.42Uncharacterized 33.9 kDa protein in mitochondrial linear 2.3 KB plasmid OS=Zea m... [more]
RPOP_MAIZE7.0e-1032.46Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1[more]
BLAST of CmaCh00G001470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A101M3N5_PICGL3.7e-1853.85RNA polymerase OS=Picea glauca GN=rpo PE=4 SV=1[more]
M7ZNX0_TRIUA9.1e-1737.10Uncharacterized protein OS=Triticum urartu GN=TRIUR3_06156 PE=4 SV=1[more]
Q332P2_WHEAT1.6e-1638.37Orf349 protein OS=Triticum aestivum GN=orf349 PE=4 SV=1[more]
B6VJT2_VITVI1.6e-1636.26DNA-directed RNA polymerase OS=Vitis vinifera GN=RNA_pol PE=3 SV=1[more]
W5XJM2_TRITD1.6e-1638.37Orf349 OS=Triticum turgidum subsp. durum PE=4 SV=1[more]
BLAST of CmaCh00G001470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|973607413|gb|KUM50494.1|5.3e-1853.85RNA polymerase (mitochondrion) [Picea glauca][more]
gi|474308422|gb|EMS61822.1|1.3e-1637.10hypothetical protein TRIUR3_06156 [Triticum urartu][more]
gi|578888294|gb|AHI16397.1|2.2e-1638.37orf349 (mitochondrion) [Triticum turgidum subsp. durum][more]
gi|224365624|ref|YP_002608352.1|2.2e-1636.26DNA-dependent RNA polymerase [Vitis vinifera][more]
gi|578888264|gb|AHI16368.1|2.2e-1638.37orf349 (mitochondrion) [Triticum turgidum subsp. durum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016779 nucleotidyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001470.1CmaCh00G001470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 10..223
score: 6.23

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001470Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001470Cucurbita maxima (Rimu)cmacmaB018
CmaCh00G001470Cucurbita moschata (Rifu)cmacmoB000