CmaCh00G000850.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G000850.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Apocytochrome f
Location	Cma_Chr00 : 4293283 .. 4293934 (+)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTTGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCCAATCGTATTTCTCCCGAGATTAAAGAAAAGATGGGCAATCCTTTCAGAGCTATCGTCCCACTAAATAAAAGATTCTTGTGATAGGGCCCGTTCCTGGTCAGAAATATAGTGAAATAACCTTTCCTATTCTTTCCCCGGACCTTGCGACTAAGAAAAGATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGGAACAGTGGAAGGGGTCAGATTTACCCGGGAGTTAGAGTCATAATAATGTTGATAATGCTACACAGGTATAGTAAGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

mRNA sequence

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

Coding sequence (CDS)

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

Protein sequence

MKIHEKQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQSTINE

Homology

[Close]

BLAST of CmaCh00G000850.1 vs. Swiss-Prot
Match: CYF_CUCSA (Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDA+N RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. Swiss-Prot
Match: CYF_EUCGG (Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITI DAS+ERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITISDASDERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. Swiss-Prot
Match: CYF_MORIN (Cytochrome f OS=Morus indica GN=petA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. Swiss-Prot
Match: CYF_CARPA (Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-13
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KI+RKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KILRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. Swiss-Prot
Match: CYF_WHEAT (Cytochrome f OS=Triticum aestivum GN=petA PE=3 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-13
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 30  RKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           RKI+RKEKGGYEI+IVDAS+ RQV+DIIPPGPELLVSEG  I  +Q
Sbjct: 215 RKILRKEKGGYEISIVDASDGRQVIDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. TrEMBL
Match: V4L6H4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011116mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-14
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 6   KQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLV 65
           ++ T  IVCANCHLA   +S     KI+RKEKGGYEITIVDASNERQV+DII  G ELLV
Sbjct: 48  REATGHIVCANCHLARGIIS-----KILRKEKGGYEITIVDASNERQVIDIIHRGLELLV 107

Query: 66  SEGGRIYQNQ 76
           SEG  I  +Q
Sbjct: 108 SEGESIKLDQ 112

[Close]

BLAST of CmaCh00G000850.1 vs. TrEMBL
Match: A0A0D2ZXA0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-14
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 14  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 73

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 74  VDASNERQVIDIIPRGLELLVSEGESIKLDQ 104

[Close]

BLAST of CmaCh00G000850.1 vs. TrEMBL
Match: A0A078DSV9_BRANA (BnaA10g14000D protein OS=Brassica napus GN=BnaA10g14000D PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-14
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000850.1 vs. TrEMBL
Match: A0A0S2IGF3_9ROSI (Cytochrome f OS=Cucurbita okeechobeensis GN=petA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. TrEMBL
Match: A0A0S2ID44_9ROSI (Cytochrome f OS=Cucurbita argyrosperma GN=petA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. TAIR10
Match: ATCG00540.1 (ATCG00540.1 photosynthetic electron transfer A)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KI+RKEKGGYEITIVDASN R+V+DIIP G ELLVSEG  I  +Q
Sbjct: 216 KILRKEKGGYEITIVDASNGREVIDIIPRGLELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. NCBI nr
Match: gi|567189783|ref|XP_006404487.1| (hypothetical protein EUTSA_v10011116mg [Eutrema salsugineum])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-14
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 6   KQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLV 65
           ++ T  IVCANCHLA   +S     KI+RKEKGGYEITIVDASNERQV+DII  G ELLV
Sbjct: 48  REATGHIVCANCHLARGIIS-----KILRKEKGGYEITIVDASNERQVIDIIHRGLELLV 107

Query: 66  SEGGRIYQNQ 76
           SEG  I  +Q
Sbjct: 108 SEGESIKLDQ 112

[Close]

BLAST of CmaCh00G000850.1 vs. NCBI nr
Match: gi|674933466|emb|CDX99940.1| (BnaC09g27650D [Brassica napus])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000850.1 vs. NCBI nr
Match: gi|952954342|gb|ALO21706.1| (PetA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. NCBI nr
Match: gi|952954735|gb|ALO22093.1| (PetA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESINLDQ 260

[Close]

BLAST of CmaCh00G000850.1 vs. NCBI nr
Match: gi|952955442|gb|ALO22790.1| (PetA (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

The following BLAST results are available for this feature:

BLAST of CmaCh00G000850.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYF_CUCSA	1.7e-13	84.44	Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1	[more]
CYF_EUCGG	2.3e-13	84.44	Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1	[more]
CYF_MORIN	3.0e-13	84.44	Cytochrome f OS=Morus indica GN=petA PE=3 SV=1	[more]
CYF_CARPA	5.1e-13	82.22	Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1	[more]
CYF_WHEAT	5.1e-13	78.26	Cytochrome f OS=Triticum aestivum GN=petA PE=3 SV=3	[more]

BLAST of CmaCh00G000850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V4L6H4_EUTSA	1.4e-14	65.71	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011116mg PE=4 SV=1	[more]
A0A0D2ZXA0_BRAOL	7.1e-14	50.55	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078DSV9_BRANA	7.1e-14	50.55	BnaA10g14000D protein OS=Brassica napus GN=BnaA10g14000D PE=4 SV=1	[more]
A0A0S2IGF3_9ROSI	1.3e-12	88.89	Cytochrome f OS=Cucurbita okeechobeensis GN=petA PE=3 SV=1	[more]
A0A0S2ID44_9ROSI	1.3e-12	88.89	Cytochrome f OS=Cucurbita argyrosperma GN=petA PE=3 SV=1	[more]

BLAST of CmaCh00G000850.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00540.1	3.5e-12	75.56	ATCG00540.1 photosynthetic electron transfer A	[more]

BLAST of CmaCh00G000850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567189783\|ref\|XP_006404487.1\|	2.1e-14	65.71	hypothetical protein EUTSA_v10011116mg [Eutrema salsugineum]	[more]
gi\|674933466\|emb\|CDX99940.1\|	1.0e-13	50.55	BnaC09g27650D [Brassica napus]	[more]
gi\|952954342\|gb\|ALO21706.1\|	1.9e-12	88.89	PetA (plastid) [Cucurbita argyrosperma]	[more]
gi\|952954735\|gb\|ALO22093.1\|	1.9e-12	88.89	PetA (plastid) [Cucurbita ficifolia]	[more]
gi\|952955442\|gb\|ALO22790.1\|	1.9e-12	88.89	PetA (plastid) [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002325	Cyt_f
IPR011054	Rudment_hybrid_motif
IPR024094	Cyt_f_lg_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0009055	electron carrier activity
GO:0020037	heme binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031361	integral component of thylakoid membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G000850	CmaCh00G000850	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G000850.1	CmaCh00G000850.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G000850.1.exon.1	CmaCh00G000850.1.exon.1	exon
CmaCh00G000850.1.exon.2	CmaCh00G000850.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G000850.1.CDS.1	CmaCh00G000850.1.CDS.1	CDS
CmaCh00G000850.1.CDS.2	CmaCh00G000850.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PROFILE	PS51010	CYTF	coord: 31..80 score: 9
IPR011054	Rudiment single hybrid motif	unknown	SSF51246	Rudiment single hybrid motif	coord: 31..76 score: 4.08
IPR024094	Cytochrome f large domain	unknown	SSF49441	Cytochrome f, large domain	coord: 6..26 score: 9.8
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 31..75 score: 2.3
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 30..75 score: 3.6
None	No IPR available	PANTHER	PTHR33288:SF3	APOCYTOCHROME F	coord: 30..75 score: 3.6