CmaCh00G000850 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G000850
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionApocytochrome f
LocationCma_Chr00 : 4293283 .. 4293934 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTTGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCCAATCGTATTTCTCCCGAGATTAAAGAAAAGATGGGCAATCCTTTCAGAGCTATCGTCCCACTAAATAAAAGATTCTTGTGATAGGGCCCGTTCCTGGTCAGAAATATAGTGAAATAACCTTTCCTATTCTTTCCCCGGACCTTGCGACTAAGAAAAGATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGGAACAGTGGAAGGGGTCAGATTTACCCGGGAGTTAGAGTCATAATAATGTTGATAATGCTACACAGGTATAGTAAGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

mRNA sequence

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

Coding sequence (CDS)

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

Protein sequence

MKIHEKQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQSTINE
Homology
[Close]
BLAST of CmaCh00G000850 vs. Swiss-Prot
Match: CYF_CUCSA (Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDA+N RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. Swiss-Prot
Match: CYF_EUCGG (Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITI DAS+ERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITISDASDERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. Swiss-Prot
Match: CYF_MORIN (Cytochrome f OS=Morus indica GN=petA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. Swiss-Prot
Match: CYF_CARPA (Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-13
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KI+RKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KILRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. Swiss-Prot
Match: CYF_WHEAT (Cytochrome f OS=Triticum aestivum GN=petA PE=3 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-13
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 30  RKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           RKI+RKEKGGYEI+IVDAS+ RQV+DIIPPGPELLVSEG  I  +Q
Sbjct: 215 RKILRKEKGGYEISIVDASDGRQVIDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. TrEMBL
Match: V4L6H4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011116mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-14
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 6   KQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLV 65
           ++ T  IVCANCHLA   +S     KI+RKEKGGYEITIVDASNERQV+DII  G ELLV
Sbjct: 48  REATGHIVCANCHLARGIIS-----KILRKEKGGYEITIVDASNERQVIDIIHRGLELLV 107

Query: 66  SEGGRIYQNQ 76
           SEG  I  +Q
Sbjct: 108 SEGESIKLDQ 112

[Close]
BLAST of CmaCh00G000850 vs. TrEMBL
Match: A0A0D2ZXA0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-14
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 14  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 73

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 74  VDASNERQVIDIIPRGLELLVSEGESIKLDQ 104

[Close]
BLAST of CmaCh00G000850 vs. TrEMBL
Match: A0A078DSV9_BRANA (BnaA10g14000D protein OS=Brassica napus GN=BnaA10g14000D PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-14
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]
BLAST of CmaCh00G000850 vs. TrEMBL
Match: A0A0S2IGF3_9ROSI (Cytochrome f OS=Cucurbita okeechobeensis GN=petA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. TrEMBL
Match: A0A0S2ID44_9ROSI (Cytochrome f OS=Cucurbita argyrosperma GN=petA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. TAIR10
Match: ATCG00540.1 (ATCG00540.1 photosynthetic electron transfer A)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KI+RKEKGGYEITIVDASN R+V+DIIP G ELLVSEG  I  +Q
Sbjct: 216 KILRKEKGGYEITIVDASNGREVIDIIPRGLELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. NCBI nr
Match: gi|567189783|ref|XP_006404487.1| (hypothetical protein EUTSA_v10011116mg [Eutrema salsugineum])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-14
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 6   KQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLV 65
           ++ T  IVCANCHLA   +S     KI+RKEKGGYEITIVDASNERQV+DII  G ELLV
Sbjct: 48  REATGHIVCANCHLARGIIS-----KILRKEKGGYEITIVDASNERQVIDIIHRGLELLV 107

Query: 66  SEGGRIYQNQ 76
           SEG  I  +Q
Sbjct: 108 SEGESIKLDQ 112

[Close]
BLAST of CmaCh00G000850 vs. NCBI nr
Match: gi|674933466|emb|CDX99940.1| (BnaC09g27650D [Brassica napus])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]
BLAST of CmaCh00G000850 vs. NCBI nr
Match: gi|952954342|gb|ALO21706.1| (PetA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. NCBI nr
Match: gi|952954735|gb|ALO22093.1| (PetA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESINLDQ 260

[Close]
BLAST of CmaCh00G000850 vs. NCBI nr
Match: gi|952955442|gb|ALO22790.1| (PetA (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 

Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

The following BLAST results are available for this feature:
BLAST of CmaCh00G000850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYF_CUCSA1.7e-1384.44Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1[more]
CYF_EUCGG2.3e-1384.44Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1[more]
CYF_MORIN3.0e-1384.44Cytochrome f OS=Morus indica GN=petA PE=3 SV=1[more]
CYF_CARPA5.1e-1382.22Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1[more]
CYF_WHEAT5.1e-1378.26Cytochrome f OS=Triticum aestivum GN=petA PE=3 SV=3[more]
BLAST of CmaCh00G000850 vs. TrEMBL
Match NameE-valueIdentityDescription
V4L6H4_EUTSA1.4e-1465.71Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011116mg PE=4 SV=1[more]
A0A0D2ZXA0_BRAOL7.1e-1450.55Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078DSV9_BRANA7.1e-1450.55BnaA10g14000D protein OS=Brassica napus GN=BnaA10g14000D PE=4 SV=1[more]
A0A0S2IGF3_9ROSI1.3e-1288.89Cytochrome f OS=Cucurbita okeechobeensis GN=petA PE=3 SV=1[more]
A0A0S2ID44_9ROSI1.3e-1288.89Cytochrome f OS=Cucurbita argyrosperma GN=petA PE=3 SV=1[more]
BLAST of CmaCh00G000850 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00540.13.5e-1275.56ATCG00540.1 photosynthetic electron transfer A[more]
BLAST of CmaCh00G000850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|567189783|ref|XP_006404487.1|2.1e-1465.71hypothetical protein EUTSA_v10011116mg [Eutrema salsugineum][more]
gi|674933466|emb|CDX99940.1|1.0e-1350.55BnaC09g27650D [Brassica napus][more]
gi|952954342|gb|ALO21706.1|1.9e-1288.89PetA (plastid) [Cucurbita argyrosperma][more]
gi|952954735|gb|ALO22093.1|1.9e-1288.89PetA (plastid) [Cucurbita ficifolia][more]
gi|952955442|gb|ALO22790.1|1.9e-1288.89PetA (plastid) [Cucurbita pepo subsp. pepo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002325Cyt_f
IPR011054Rudment_hybrid_motif
IPR024094Cyt_f_lg_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0020037heme binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0031361integral component of thylakoid membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031361 integral component of thylakoid membrane
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000850.1CmaCh00G000850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002325Cytochrome fPROFILEPS51010CYTFcoord: 31..80
score: 9
IPR011054Rudiment single hybrid motifunknownSSF51246Rudiment single hybrid motifcoord: 31..76
score: 4.08
IPR024094Cytochrome f large domainunknownSSF49441Cytochrome f, large domaincoord: 6..26
score: 9.8
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 31..75
score: 2.3
NoneNo IPR availablePANTHERPTHR33288FAMILY NOT NAMEDcoord: 30..75
score: 3.6
NoneNo IPR availablePANTHERPTHR33288:SF3APOCYTOCHROME Fcoord: 30..75
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G000850Cucurbita maxima (Rimu)cmacmaB002
CmaCh00G000850Cucurbita maxima (Rimu)cmacmaB006
CmaCh00G000850Cucurbita moschata (Rifu)cmacmoB000
CmaCh00G000850Cucurbita moschata (Rifu)cmacmoB003