CmaCh00G000820.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G000820.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChloroplast envelope membrane protein
LocationCma_Chr00 : 4272802 .. 4274238 (-)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTCCTTGAGGAAGTTCAGAATGAATGCTTTCTTAGTTCGTAGCAAGAGGGATAAAACGGAAAAGATAGAATAGTTTTTTTTATAGACCCCTAGTATAACTTAACGGGAATTTCTGAAGAATGCTCATTCATTTGAGCCAAAGCAGACGTATAGGGAACAGACGGAAAACTGTCTTACTTTGTCCGAAATTATGATGCGTATGTAACTCCACAGTAACAAAAGTGGATTCTTTGATATTTGCTTTCTGTATTATTTCGAAATTCAAGGATTAACTAATGAACAGGGAATGGATTCATAATAGTATCTGATAAGATAAGGAACCACTACAAGGGGAGTAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGGCAAGAACATTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAGGCAAGAACACTTCCATGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAACTTAGTCATTGGCTAAAGAAGAGCACAAATGCTTCTTTTTACTATATTTTTCAAGTCCCTTACACATACAACATACATGGCTTTATATAGCCTCAAAATGGAACTACTATAGGCATTCCAAGAATTGTAACATTCATACTTAATGGTCATAATTAACCATTATGTAATTGTAACCTAAAGTAAATAAAAAGTCCTAAAAACTCTAAATTGTAACCCACCCAAAATTTATAACAATCAAACTTCACTCTTCTTCAATGTGGCATGCATTGAAACATCTTTTGATAATTTTGACAACTTTTTCTTCACATCGTCATTGAAGTATATTGTATGATTGATGTTTTTTTGTTCATATCAGTATCCATACGATTTTGCACTTCTCGACAAATAGAATCCGTTTCATTATTCTAAGTGGTTATTCTCTATTCTTGGTAATTAAGAACTTGTTATTCTTCACTCTTGGGTTCACGAGTTCCTATATAATTTAAGCGACACAATCAAAGCTTTTTCGATTCTTTTATTAACTGATTTATGTATAGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

mRNA sequence

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Coding sequence (CDS)

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Protein sequence

MYVVSFIWKSEAKGPLTRTDQNLTHPTREKFEIEQKAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDTANIGSLFKSSISVTCSD
Homology
[Close]
BLAST of CmaCh00G000820.1 vs. Swiss-Prot
Match: CEMA_AMBTC (Chloroplast envelope membrane protein OS=Amborella trichopoda GN=cemA PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-18
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L  +CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDSCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. Swiss-Prot
Match: CEMA_VITVI (Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. Swiss-Prot
Match: CEMA_BUXMI (Chloroplast envelope membrane protein OS=Buxus microphylla GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 147 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 200

[Close]
BLAST of CmaCh00G000820.1 vs. Swiss-Prot
Match: CEMA_LIRTU (Chloroplast envelope membrane protein OS=Liriodendron tulipifera GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. Swiss-Prot
Match: CEMA_MANES (Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 152 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 205

[Close]
BLAST of CmaCh00G000820.1 vs. TrEMBL
Match: A0A0S2IEU1_9ROSI (CemA OS=Cucurbita ficifolia GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. TrEMBL
Match: A0A0S2IF82_9ROSI (CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. TrEMBL
Match: A0A0S2IE38_9ROSI (CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. TrEMBL
Match: X2F1U1_LAGSI (envelope membrane protein, chloroplastic OS=Lagenaria siceraria GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. TrEMBL
Match: A0A0S2IH41_9ROSI (CemA OS=Cucurbita pedatifolia GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. TAIR10
Match: ATCG00530.1 (ATCG00530.1 CemA-like proton extrusion protein-related)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-16
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIG +YKDF F+H +QILSGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGYIYKDFGFAHYEQILSGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. NCBI nr
Match: gi|34500926|ref|NP_904111.1| (envelope membrane protein [Amborella trichopoda])

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-16
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L  +CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDSCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. NCBI nr
Match: gi|952954755|gb|ALO22113.1| (cemA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. NCBI nr
Match: gi|1002164500|ref|YP_009234652.1| (envelope membrane protein (chloroplast) [Meliosma aff. cuneifolia Moore 333])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. NCBI nr
Match: gi|346578203|ref|YP_004841795.1| (chloroplast envelope membrane protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]
BLAST of CmaCh00G000820.1 vs. NCBI nr
Match: gi|952954401|gb|ALO21765.1| (cemA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

The following BLAST results are available for this feature:
BLAST of CmaCh00G000820.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CEMA_AMBTC5.3e-1879.63Chloroplast envelope membrane protein OS=Amborella trichopoda GN=cemA PE=3 SV=1[more]
CEMA_VITVI2.0e-1777.78Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1[more]
CEMA_BUXMI2.0e-1777.78Chloroplast envelope membrane protein OS=Buxus microphylla GN=cemA PE=3 SV=1[more]
CEMA_LIRTU2.0e-1777.78Chloroplast envelope membrane protein OS=Liriodendron tulipifera GN=cemA PE=3 SV... [more]
CEMA_MANES2.0e-1777.78Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1[more]
BLAST of CmaCh00G000820.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IEU1_9ROSI1.0e-1579.63CemA OS=Cucurbita ficifolia GN=cemA PE=3 SV=1[more]
A0A0S2IF82_9ROSI1.0e-1579.63CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1[more]
A0A0S2IE38_9ROSI1.0e-1579.63CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1[more]
X2F1U1_LAGSI1.0e-1579.63envelope membrane protein, chloroplastic OS=Lagenaria siceraria GN=cemA PE=3 SV=... [more]
A0A0S2IH41_9ROSI1.0e-1579.63CemA OS=Cucurbita pedatifolia GN=cemA PE=3 SV=1[more]
BLAST of CmaCh00G000820.1 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00530.11.1e-1672.22ATCG00530.1 CemA-like proton extrusion protein-related[more]
BLAST of CmaCh00G000820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|34500926|ref|NP_904111.1|8.5e-1679.63envelope membrane protein [Amborella trichopoda][more]
gi|952954755|gb|ALO22113.1|1.5e-1579.63cemA (plastid) [Cucurbita ficifolia][more]
gi|1002164500|ref|YP_009234652.1|1.5e-1579.63envelope membrane protein (chloroplast) [Meliosma aff. cuneifolia Moore 333][more]
gi|346578203|ref|YP_004841795.1|1.5e-1579.63chloroplast envelope membrane protein [Cucumis melo subsp. melo][more]
gi|952954401|gb|ALO21765.1|1.5e-1579.63cemA (plastid) [Cucurbita argyrosperma][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004282CemA
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0019031 viral envelope
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh00G000820CmaCh00G000820gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh00G000820.1CmaCh00G000820.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh00G000820.1.CDS.2CmaCh00G000820.1.CDS.2CDS
CmaCh00G000820.1.CDS.1CmaCh00G000820.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh00G000820.1.exon.2CmaCh00G000820.1.exon.2exon
CmaCh00G000820.1.exon.1CmaCh00G000820.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004282Chloroplast envelope membrane protein, CemAPFAMPF03040CemAcoord: 47..89
score: 2.7
NoneNo IPR availablePANTHERPTHR33650FAMILY NOT NAMEDcoord: 47..89
score: 1.7
NoneNo IPR availablePANTHERPTHR33650:SF2CHLOROPLAST ENVELOPE MEMBRANE PROTEINcoord: 47..89
score: 1.7