CmaCh00G000820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G000820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chloroplast envelope membrane protein
Location	Cma_Chr00 : 4272802 .. 4274238 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTCCTTGAGGAAGTTCAGAATGAATGCTTTCTTAGTTCGTAGCAAGAGGGATAAAACGGAAAAGATAGAATAGTTTTTTTTATAGACCCCTAGTATAACTTAACGGGAATTTCTGAAGAATGCTCATTCATTTGAGCCAAAGCAGACGTATAGGGAACAGACGGAAAACTGTCTTACTTTGTCCGAAATTATGATGCGTATGTAACTCCACAGTAACAAAAGTGGATTCTTTGATATTTGCTTTCTGTATTATTTCGAAATTCAAGGATTAACTAATGAACAGGGAATGGATTCATAATAGTATCTGATAAGATAAGGAACCACTACAAGGGGAGTAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGGCAAGAACATTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAGGCAAGAACACTTCCATGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAACTTAGTCATTGGCTAAAGAAGAGCACAAATGCTTCTTTTTACTATATTTTTCAAGTCCCTTACACATACAACATACATGGCTTTATATAGCCTCAAAATGGAACTACTATAGGCATTCCAAGAATTGTAACATTCATACTTAATGGTCATAATTAACCATTATGTAATTGTAACCTAAAGTAAATAAAAAGTCCTAAAAACTCTAAATTGTAACCCACCCAAAATTTATAACAATCAAACTTCACTCTTCTTCAATGTGGCATGCATTGAAACATCTTTTGATAATTTTGACAACTTTTTCTTCACATCGTCATTGAAGTATATTGTATGATTGATGTTTTTTTGTTCATATCAGTATCCATACGATTTTGCACTTCTCGACAAATAGAATCCGTTTCATTATTCTAAGTGGTTATTCTCTATTCTTGGTAATTAAGAACTTGTTATTCTTCACTCTTGGGTTCACGAGTTCCTATATAATTTAAGCGACACAATCAAAGCTTTTTCGATTCTTTTATTAACTGATTTATGTATAGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

mRNA sequence

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Coding sequence (CDS)

ATGTACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAAAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGCAAAAGGCTGCCGAATTGGCTGGCCTATTTCTTGCGTGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTAGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGA

Protein sequence

MYVVSFIWKSEAKGPLTRTDQNLTHPTREKFEIEQKAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDTANIGSLFKSSISVTCSD

Homology

[Close]

BLAST of CmaCh00G000820 vs. Swiss-Prot
Match: CEMA_AMBTC (Chloroplast envelope membrane protein OS=Amborella trichopoda GN=cemA PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-18
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L  +CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDSCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. Swiss-Prot
Match: CEMA_VITVI (Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. Swiss-Prot
Match: CEMA_BUXMI (Chloroplast envelope membrane protein OS=Buxus microphylla GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 147 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 200

[Close]

BLAST of CmaCh00G000820 vs. Swiss-Prot
Match: CEMA_LIRTU (Chloroplast envelope membrane protein OS=Liriodendron tulipifera GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. Swiss-Prot
Match: CEMA_MANES (Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF F+HNDQI+SGLVST PVILDT
Sbjct: 152 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFAHNDQIISGLVSTFPVILDT 205

[Close]

BLAST of CmaCh00G000820 vs. TrEMBL
Match: A0A0S2IEU1_9ROSI (CemA OS=Cucurbita ficifolia GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. TrEMBL
Match: A0A0S2IF82_9ROSI (CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. TrEMBL
Match: A0A0S2IE38_9ROSI (CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. TrEMBL
Match: X2F1U1_LAGSI (envelope membrane protein, chloroplastic OS=Lagenaria siceraria GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. TrEMBL
Match: A0A0S2IH41_9ROSI (CemA OS=Cucurbita pedatifolia GN=cemA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. TAIR10
Match: ATCG00530.1 (ATCG00530.1 CemA-like proton extrusion protein-related)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-16
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIG +YKDF F+H +QILSGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGYIYKDFGFAHYEQILSGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: gi|34500926|ref|NP_904111.1| (envelope membrane protein [Amborella trichopoda])

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-16
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L  +CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDSCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: gi|952954755|gb|ALO22113.1| (cemA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: gi|1002164500|ref|YP_009234652.1| (envelope membrane protein (chloroplast) [Meliosma aff. cuneifolia Moore 333])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: gi|346578203|ref|YP_004841795.1| (chloroplast envelope membrane protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

[Close]

BLAST of CmaCh00G000820 vs. NCBI nr
Match: gi|952954401|gb|ALO21765.1| (cemA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 36  KAAELAGLFLACIGFHSPHGWELMIGSVYKDFRFSHNDQILSGLVSTLPVILDT 90
           KA  +  L   CIGFHSPHGWELMIGSVYKDF FSHNDQI+SGLVST PVILDT
Sbjct: 150 KAFSILLLTDLCIGFHSPHGWELMIGSVYKDFGFSHNDQIISGLVSTFPVILDT 203

The following BLAST results are available for this feature:

BLAST of CmaCh00G000820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CEMA_AMBTC	5.3e-18	79.63	Chloroplast envelope membrane protein OS=Amborella trichopoda GN=cemA PE=3 SV=1	[more]
CEMA_VITVI	2.0e-17	77.78	Chloroplast envelope membrane protein OS=Vitis vinifera GN=cemA PE=3 SV=1	[more]
CEMA_BUXMI	2.0e-17	77.78	Chloroplast envelope membrane protein OS=Buxus microphylla GN=cemA PE=3 SV=1	[more]
CEMA_LIRTU	2.0e-17	77.78	Chloroplast envelope membrane protein OS=Liriodendron tulipifera GN=cemA PE=3 SV...	[more]
CEMA_MANES	2.0e-17	77.78	Chloroplast envelope membrane protein OS=Manihot esculenta GN=cemA PE=3 SV=1	[more]

BLAST of CmaCh00G000820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IEU1_9ROSI	1.0e-15	79.63	CemA OS=Cucurbita ficifolia GN=cemA PE=3 SV=1	[more]
A0A0S2IF82_9ROSI	1.0e-15	79.63	CemA OS=Cucurbita lundelliana GN=cemA PE=3 SV=1	[more]
A0A0S2IE38_9ROSI	1.0e-15	79.63	CemA OS=Cucurbita argyrosperma GN=cemA PE=3 SV=1	[more]
X2F1U1_LAGSI	1.0e-15	79.63	envelope membrane protein, chloroplastic OS=Lagenaria siceraria GN=cemA PE=3 SV=...	[more]
A0A0S2IH41_9ROSI	1.0e-15	79.63	CemA OS=Cucurbita pedatifolia GN=cemA PE=3 SV=1	[more]

BLAST of CmaCh00G000820 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00530.1	1.1e-16	72.22	ATCG00530.1 CemA-like proton extrusion protein-related	[more]

BLAST of CmaCh00G000820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|34500926\|ref\|NP_904111.1\|	8.5e-16	79.63	envelope membrane protein [Amborella trichopoda]	[more]
gi\|952954755\|gb\|ALO22113.1\|	1.5e-15	79.63	cemA (plastid) [Cucurbita ficifolia]	[more]
gi\|1002164500\|ref\|YP_009234652.1\|	1.5e-15	79.63	envelope membrane protein (chloroplast) [Meliosma aff. cuneifolia Moore 333]	[more]
gi\|346578203\|ref\|YP_004841795.1\|	1.5e-15	79.63	chloroplast envelope membrane protein [Cucumis melo subsp. melo]	[more]
gi\|952954401\|gb\|ALO21765.1\|	1.5e-15	79.63	cemA (plastid) [Cucurbita argyrosperma]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004282	CemA

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0019031	viral envelope
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000820.1	CmaCh00G000820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004282	Chloroplast envelope membrane protein, CemA	PFAM	PF03040	CemA	coord: 47..89 score: 2.7
None	No IPR available	PANTHER	PTHR33650	FAMILY NOT NAMED	coord: 47..89 score: 1.7
None	No IPR available	PANTHER	PTHR33650:SF2	CHLOROPLAST ENVELOPE MEMBRANE PROTEIN	coord: 47..89 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G000820	Cucurbita maxima (Rimu)	cmacmaB002
CmaCh00G000820	Cucurbita maxima (Rimu)	cmacmaB006
CmaCh00G000820	Cucurbita moschata (Rifu)	cmacmoB000
CmaCh00G000820	Cucurbita moschata (Rifu)	cmacmoB003