Cla97C11G215470.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C11G215470.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr11 : 12081906 .. 12086401 (+)
Sequence length549
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCCAAACTTCTTATGTTCTTCAGCGTTTGCTGCTAACCTGCGCCGGAGGCATTTCGGCGACCCTTCTTACTGCCCTCCTCGCCCTGCCCGAGTTGATTGCTTCTTCTCAGGTGAAGTTATACCGCTCTTTTCCTTCTTCTCAATTCGTTAATCATCCTGTTTGGTCTGTTCATATTCTGTTTTCGAAATCACAATAATTCCTCGTCTTCTGTTCTTTACGACTTTCTTTACCTTTTGAATTTGTTATTACTTACAATACGAAAGACGACACATCTCCTCAGGATTATATTCATTAGGTTTAAATCCTATCTCCCCAGTTTTATTTTTTTATTTTTTTTTTATTTTTGACCTCTTAAAATGTATCTTTTAGTTTTTAAATTTTATTTATTTTTTTTTTTAATGAGGTAGGAGAATCTAATTTTTTATCCGTTTGGCTATGCTTATTTTAACAAATAAAAAATATTATATCAAGCATAAAACAACAAGTGTATAAGTTAATATTCAATTGCTTTTAAGAATATATATTCACACGTTAATACAAGCATCATTTCAAGTCAAATAAGTTAAAAGATGAATATCAGACAAAGTCGTGATTATTTTTTTTTTAGGATTTTAAAAATTCAAATAGATACTAAAAGTTTAGGTTAAAATATACCTTTGGTACCTATACTTTAGAGTTTGTTCAATTTTAGCCCAATGTCCAATTTTATTCCCTGAACTTTCAATAAATCTTAAATTTAGTCCTTATTACTTGTTTGTCGTGGATTTTTCACTACTTTTTATTTTTTTATTAAACATTTTTACTATAAATTTTGAAAATATATCCACATATTATGTTTCTTGCATGAGAATTATTATGATTATGTAATAAATTTCAATAAAAATTAACTTGGAGGGTCTATTGAAAATACAAGGATTAAAATTAGAAATTTAGAAATATAGAGACTAAAATTAAATAAATGATAAAATATACGGACCAAAATAATATTTTAACCAAAAGTTTATAAACTAAACATAAATCTTTTTAAAAGGTTGAAAGATAAAAACTTTGCATCCATTTTTGTGGAAATAATTATTTAATAAAAATGGATTTGTAGACTTATAATTATAATTTTAAAAATATTTGAAAATTAAAATAGTAAGATGAGGTTTAAAGCTTAATATTTGGAATTATTTAAAAGCAAAAGATTAAAGACTGAAACGGTGGTTACCAATAGAAAAGTAAAAATCATATATAAAAACTCTTGGAAGTTATAGTTTGTCATGAAAGATGAGATTCCCGAGACTTGTTGTCCTCTCATGTTTACACCTTTTTTCTTTCCATTTTTTATATCTCTTTTGCAAACGTTTTTTTTTTTTTTTTTTCATTCTAAATGTGGAAACTTTTAGAAAGATATAATAATTTTCCGCAATTTGTGTCATTTCTCAATTTTGTCTCCTCTTGCTGTTTAAAATATTCAATAATATTTGTCGGTCTTGTTCATTTATTTTTTAAATGAGTCCTTACCAAGAGTTGAAAATCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAATGTATATTTCGATCAATCTACATGTGGAAAAAAAAAATTCAAAATCAATAATGTAAAATAGATTTTTTTTTTCAAATTAAAATATAAGGTATTTTATACCAGATAAAATTAATTTTATATGACATCATCACTCTACCTATGAACTTTTAACTTAAAAAGATAGTAAAGAATTGATTGGAAAAAGAAAGGAATCAAGATATAAAGGATATGAAATTTATTTTTCCAAAAACAAAACAAAATTGAAAATTTTCACAAATATTATGAATCCAAATTACTTATGTGGCCTTTTTCTTTTTTAACTTGCGTATATATATGAACAAGAATTTAACTACACTTCAATTAAATTAAACTTGATAGAAAACTAATAATTATTTTTAAATTTAAGAAAAAATTAGATAAAAACATGTAAGCAATAAATGTAATTTTTTTTTTTTTTTTTTTGTGGTTCTTGAATACCATAATTTTTTTTAATAAAAAATTGGTACAGAGGTAGATTTTAGAATGTTAATACCTAAATTTATAGAGTCGAAAAATAATTTTATGCATGTATAAAGCAAATGGTAGCATGGTGTTCGTGCATACCAATATACATGAGATATTTGTATTGATAACTCAATCCCAGTGGCTTTAATGTTGAATGACCCAATTCTTGAAAACTAATGAAATCTAACTTTTTGTTTACGTTATAGCACCATTGCCTAATCGCGTTAAAGATATCTCACCCATCGCGAGAGGGTCAAAGTCCTAATGTGATTTTCATTTCTAAATATCGATTGGTCAACTGTTGATTTTTATTTTTCTAAAAAAAAGATCGGTTGAAATGAATATTGTGTTAGAGCTCCTATTTTTTTTTTTTGGTGATGGGAGGGACATCCCTAATGCAATAGTCACTATGACATCACCCTCATCATTGGGCCAACCTGGTCCTAAAAAGTGAAAGCCCAAGCCCAAAGGCCTATGACACTCTTTAGGCTTGGATTGGGCCAACCCAATCTTCAATAGGCAAGCCCATAGCTCAACCCTTGGGCTTTGCTCTTTGGATCAAACTTTGGTTGGACTTAGGCCGGCCCATTGGATTAATTCATTGAATATTAATTATTTAAATATTTAGAAATATATACGTATATTTTAGATTTTTTATGAAATGTTATTAAAATTTATTTTATATTTTTATTATTTTTTTAGATAAAATCATTGATATTATAAAATTTAATATTAGTGATTTAATTTTCTCATAAAGTTTTATTAGTTTTTTAATACTTTAAAAAATTATGTTAACTAAAAACTGCAATATATCTAAATATATTTTTAAAAAGAATTTTAAAAAATTTATTTTTTTAATATATATATAATATAAATATTGGAAAAACTACACGTATGCATATATATTTGGGTTGGTCCAACGTCGATTGGCGGTTGATCCAAATATAGCCCAAATGGGCTAGTTAGATTACCAAAATGATGATCTATATCCAATCCAATGAATGGGTTGGACTGGATTGGACCAGTCAAACGTTGACTTTTGGGCCAAGCTTATATTGAGCTTGGGTGGGCTTGGGCCAACCTTTGAGCTTTGGGCCCGTTGACATCAACAAAAAGTTAATTTTTATTCGTTGTTTAGGTTTGAGTCATTCTACATTAACACATCCAAAAATGGGTCATTAGTACAAAAGTATGTATTCTAAGCCTGACTCGTAAGTATTTTATGGACGATCTAATTCAAATTCTAGCAAGTTCATCTTAAACTTAAAAACCTAACATGTTAATTATTTTAATCTTTGTGATTAACGTGTCATGAAAAAGAAAGAATGATGACACAGTTTATTCTTTGTACACATTAATTTTATCAAACAATAATGGTATTAGTAAATGGTGATACACTGCAATTTTGTTGGCTCAACACGGCCTTCCTAGGCCTATTATGTTCACCCTTTTATCCTAACGCCCCTCCCCCCGCCATATTGGGCCATAAACAAAAGATTCCCTAAGCTGTATTAATAATTATGATTTTATGTGTGGACAATTTTCTAGTATCTTGTTCATTCGTAACAAAATTTTTTTTTGTGCAACGATGAAAAGATGTTTCTTTTCTTTTGAGATATACTATGTCACCAATAGAGTTATATGTAGGAAAATTATTTTAAAGAAAAAAAGTGCTGAAAATATTTACAACTAATAGCAAAACATAACGGTCTATCACAATAGACTACTATGTCTATCGTGACACAAATAATAGTCCGTCGTGATCTATCGCAGATAGACTAAGAAATTTTGTTACATTTGTAAATATTTTGGTTCCTTTTGCTATATTTGAAAATAGCCTTTATATGTATCTAACATATTTATATCTAACGATTTCCCACAAGGTGGCAACAAAAGTTGAATCACATTGCTTTTGGAAGTCATCCTAGTTCTACTTTGCCCCCTTTTTTGGTGATCATCTATAATTGCTCTTTCTAATGAACTATATCTTTGTGGCATGATTCAAATTGATTTCCCATCCAGTTCATGGATTCGAATAAGATGAATGCCATTGATGCATCCAACAACAAAAGAAAATCCAAGTCTAGGAAATGTCAGACAACAAAGCCTATTGATGGAGAAGAAAATGAAAACGAGAATAATGACAGTGATAATGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAAGAAGGAAAAAATGCTCCCACTAAAGATGGTGCCAATGGAGGAGAAGATGCTAGCAATGACAATGGCGACAATGGAAGTGAGAACAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGGAGCGATGAGAATAATGAAGATAATAATGAAGACGAGGAAGATGTGGATGAAGAAGATGCAGAAGAAGACAACTTTGAAGAAGACGACGACGAAGAGACTCTTCCACCACCAAAGAAGAGAAAGAAGTAA

mRNA sequence

ATGGAACCCCAAACTTCTTATGTTCTTCAGCGTTTGCTGCTAACCTGCGCCGGAGGCATTTCGGCGACCCTTCTTACTGCCCTCCTCGCCCTGCCCGAGTTGATTGCTTCTTCTCAGTTCATGGATTCGAATAAGATGAATGCCATTGATGCATCCAACAACAAAAGAAAATCCAAGTCTAGGAAATGTCAGACAACAAAGCCTATTGATGGAGAAGAAAATGAAAACGAGAATAATGACAGTGATAATGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAAGAAGGAAAAAATGCTCCCACTAAAGATGGTGCCAATGGAGGAGAAGATGCTAGCAATGACAATGGCGACAATGGAAGTGAGAACAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGGAGCGATGAGAATAATGAAGATAATAATGAAGACGAGGAAGATGTGGATGAAGAAGATGCAGAAGAAGACAACTTTGAAGAAGACGACGACGAAGAGACTCTTCCACCACCAAAGAAGAGAAAGAAGTAA

Coding sequence (CDS)

ATGGAACCCCAAACTTCTTATGTTCTTCAGCGTTTGCTGCTAACCTGCGCCGGAGGCATTTCGGCGACCCTTCTTACTGCCCTCCTCGCCCTGCCCGAGTTGATTGCTTCTTCTCAGTTCATGGATTCGAATAAGATGAATGCCATTGATGCATCCAACAACAAAAGAAAATCCAAGTCTAGGAAATGTCAGACAACAAAGCCTATTGATGGAGAAGAAAATGAAAACGAGAATAATGACAGTGATAATGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAAGAAGGAAAAAATGCTCCCACTAAAGATGGTGCCAATGGAGGAGAAGATGCTAGCAATGACAATGGCGACAATGGAAGTGAGAACAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGGAGCGATGAGAATAATGAAGATAATAATGAAGACGAGGAAGATGTGGATGAAGAAGATGCAGAAGAAGACAACTTTGAAGAAGACGACGACGAAGAGACTCTTCCACCACCAAAGAAGAGAAAGAAGTAA

Protein sequence

MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKSRKCQTTKPIDGEENENENNDSDNELGEDQEVLENGEEGKNAPTKDGANGGEDASNDNGDNGSENSGEGGDDDEEDNDDGGSDENNEDNNEDEEDVDEEDAEEDNFEEDDDEETLPPPKKRKK
Homology
[Close]
BLAST of Cla97C11G215470.1 vs. NCBI nr
Match: XP_011649914.1 (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus] >KGN63111.1 hypothetical protein Csa_2G403660 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 9.1e-14
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME +T+ V QRLLLT AGGISATL    +AL EL+ASSQF+DSNKM+ IDAS+ KRKSKS
Sbjct: 1  MEIETASVHQRLLLTFAGGISATLF-GFVALAELLASSQFLDSNKMDVIDASDEKRKSKS 60

Query: 61 RKCQTTKPI 70
          RKCQTT+PI
Sbjct: 61 RKCQTTRPI 68

[Close]
BLAST of Cla97C11G215470.1 vs. NCBI nr
Match: XP_004138812.2 (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 9.1e-14
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME +T+ V QRLLLT AGGISATL    +AL EL+ASSQF+DSNKM+ IDAS+ KRKSKS
Sbjct: 11 MEIETASVHQRLLLTFAGGISATLF-GFVALAELLASSQFLDSNKMDVIDASDEKRKSKS 70

Query: 61 RKCQTTKPI 70
          RKCQTT+PI
Sbjct: 71 RKCQTTRPI 78

[Close]
BLAST of Cla97C11G215470.1 vs. NCBI nr
Match: XP_008441238.1 (PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 7.7e-13
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME + S V QRLLLT A GISATL    +AL EL+AS++F+DSNKM+ IDASN KRKSKS
Sbjct: 1  MEIENSSVHQRLLLTFAAGISATLF-GFVALAELLASTEFLDSNKMDVIDASNEKRKSKS 60

Query: 61 RKCQTTKPIDGE 73
          RKCQTT+  DGE
Sbjct: 61 RKCQTTRLTDGE 71

[Close]
BLAST of Cla97C11G215470.1 vs. NCBI nr
Match: XP_022939135.1 (uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME  TS + QRLLL CAG  SATLL  L+A+ EL+ASSQF+  N+M+AI   N KRK  S
Sbjct: 1  METATSSIHQRLLLACAGSTSATLL-GLVAMAELLASSQFLAPNEMDAIAVFNKKRKFTS 60

Query: 61 RKCQT 66
           K QT
Sbjct: 61 GKRQT 64

[Close]
BLAST of Cla97C11G215470.1 vs. NCBI nr
Match: XP_022939134.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME  TS + QRLLL CAG  SATLL  L+A+ EL+ASSQF+  N+M+AI   N KRK  S
Sbjct: 11 METATSSIHQRLLLACAGSTSATLL-GLVAMAELLASSQFLAPNEMDAIAVFNKKRKFTS 70

Query: 61 RKCQT 66
           K QT
Sbjct: 71 GKRQT 74

[Close]
BLAST of Cla97C11G215470.1 vs. TrEMBL
Match: tr|A0A0A0LSW9|A0A0A0LSW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403660 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.0e-14
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME +T+ V QRLLLT AGGISATL    +AL EL+ASSQF+DSNKM+ IDAS+ KRKSKS
Sbjct: 1  MEIETASVHQRLLLTFAGGISATLF-GFVALAELLASSQFLDSNKMDVIDASDEKRKSKS 60

Query: 61 RKCQTTKPI 70
          RKCQTT+PI
Sbjct: 61 RKCQTTRPI 68

[Close]
BLAST of Cla97C11G215470.1 vs. TrEMBL
Match: tr|A0A1S3B301|A0A1S3B301_CUCME (uncharacterized protein DDB_G0290685-like OS=Cucumis melo OX=3656 GN=LOC103485427 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME + S V QRLLLT A GISATL    +AL EL+AS++F+DSNKM+ IDASN KRKSKS
Sbjct: 1  MEIENSSVHQRLLLTFAAGISATLF-GFVALAELLASTEFLDSNKMDVIDASNEKRKSKS 60

Query: 61 RKCQTTKPIDGE 73
          RKCQTT+  DGE
Sbjct: 61 RKCQTTRLTDGE 71

The following BLAST results are available for this feature:
BLAST of Cla97C11G215470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649914.19.1e-1472.46PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus... [more]
XP_004138812.29.1e-1472.46PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus... [more]
XP_008441238.17.7e-1368.06PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo][more]
XP_022939135.12.7e-0558.46uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita moschata][more]
XP_022939134.12.7e-0558.46uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata][more]
BLAST of Cla97C11G215470.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSW9|A0A0A0LSW9_CUCSA6.0e-1472.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403660 PE=4 SV=1[more]
tr|A0A1S3B301|A0A1S3B301_CUCME5.1e-1368.06uncharacterized protein DDB_G0290685-like OS=Cucumis melo OX=3656 GN=LOC10348542... [more]
BLAST of Cla97C11G215470.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C11G215470.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C11G215470Cla97C11G215470gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C11G215470.1.exon.1Cla97C11G215470.1.exon.1exon
Cla97C11G215470.1.exon.2Cla97C11G215470.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C11G215470.1.CDS.1Cla97C11G215470.1.CDS.1CDS
Cla97C11G215470.1.CDS.2Cla97C11G215470.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C11G215470.1Cla97C11G215470.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 148..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..74