Cla97C11G210820.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C11G210820.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr11 : 4177359 .. 4178272 (+)
Sequence length	183

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGTTACTCTCACGTGGGAATTGATGCAAATTATAGATAAGAATTGTATGGTTTTAAATTTTTAGATTGTCTTCAAAATCCCAACTCCATTAGAGCTTTCTCTCTTTCTCTGTATTCTGTGGATTCCTTCTGGGTTTTCCCCCCATTTTCTTTCTTTGAGATCCATTGATTTGTTTGTGTTTTTATTCTGTATAGTTCTTTGTTGTTGTGTTTTATCTTTCTGGGGTTTGAAGAAATTTCCATGAAAAGTTAGATTTGATGTTGTGTTGGTATTTGGGATTTTGCTTTGGGATTTTTGGGCTCCGCCGATCGGGTGCTGTTTTCGAGCTTTTTTGTTCCCTCCGACAACCACAACCACAACCGTCGCGGATTTCAGGGTAATTTTTATCTTAAACTATATACTTATGCTCAGTCACCTTTTTAATTTGTTTATTCAACTATGAACTTAAAATATTCAATTCTTGTCTCTGCATATGCTAAGAAAGTACACTCTGCTTGATTTCTTCTGCTGATCAGTTCTGCATGCAGGTTATGAGTAGCTCTATGTTGATTGCTTCTCCTATTTCTTCTTCTTCTTTTTGTGGGGATTTGGGGGAAACTTCTGATTGATGGTTTTTGTTGTGAATTGGTTGCTCTTAATGTGGTTTTGTGAATTTGGCTGTATATTAAGTAACTGGAGAATCTATGGTCTCGATGTTTGTTTTAATTTTAATATTTCATTAATCATTAGTAGGAAGCTTGTGAAGAAGTATGGAATTGAAAACCCTAGGAATTTGCCATCATGAGTTGAGTTTTTGTTTGTTTGTTGACATTCAATTGAACTTTTGATTAATTGGTGACTGAAAATTATGTTAGGTGCCAACGATACTTGATCTCGGTCACCGTAGAATCCGAAAAGTTCTGAATTGA

mRNA sequence

ATGGGATTTGATGTTGTGTTGGTATTTGGGATTTTGCTTTGGGATTTTTGGGCTCCGCCGATCGGGTGCTGTTTTCGAGCTTTTTTGTTCCCTCCGACAACCACAACCACAACCGTCGCGGATTTCAGGGTGCCAACGATACTTGATCTCGGTCACCGTAGAATCCGAAAAGTTCTGAATTGA

Coding sequence (CDS)

ATGGGATTTGATGTTGTGTTGGTATTTGGGATTTTGCTTTGGGATTTTTGGGCTCCGCCGATCGGGTGCTGTTTTCGAGCTTTTTTGTTCCCTCCGACAACCACAACCACAACCGTCGCGGATTTCAGGGTGCCAACGATACTTGATCTCGGTCACCGTAGAATCCGAAAAGTTCTGAATTGA

Protein sequence

MGFDVVLVFGILLWDFWAPPIGCCFRAFLFPPTTTTTTVADFRVPTILDLGHRRIRKVLN

Homology

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BLAST of Cla97C11G210820.1 vs. NCBI nr
Match: KGN61832.1 (hypothetical protein Csa_2G249865 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 3   FDVVLVFGI---LLWDFWAPPIGCCFRAFLFPPTXXXXXVADFRVPTILDLGHRRIRKVL 61
           FDVVLVFGI     W+FWAPPIGCCFRAFLFPPT     VADFRV T+L+       K L
Sbjct: 68  FDVVLVFGIWDFSFWNFWAPPIGCCFRAFLFPPT--TTTVADFRVTTVLEFVTVESEKAL 126

[Close]

BLAST of Cla97C11G210820.1 vs. TrEMBL
Match: tr|A0A0A0LM19|A0A0A0LM19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249865 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-11
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 3   FDVVLVFGI---LLWDFWAPPIGCCFRAFLFPPTXXXXXVADFRVPTILDLGHRRIRKVL 61
           FDVVLVFGI     W+FWAPPIGCCFRAFLFPPT     VADFRV T+L+       K L
Sbjct: 68  FDVVLVFGIWDFSFWNFWAPPIGCCFRAFLFPPT--TTTVADFRVTTVLEFVTVESEKAL 126

The following BLAST results are available for this feature:

BLAST of Cla97C11G210820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61832.1	1.2e-10	63.93	hypothetical protein Csa_2G249865 [Cucumis sativus]	[more]

BLAST of Cla97C11G210820.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM19\|A0A0A0LM19_CUCSA	7.8e-11	63.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249865 PE=4 SV=1	[more]

BLAST of Cla97C11G210820.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C11G210820.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C11G210820	Cla97C11G210820	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C11G210820.1	Cla97C11G210820.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G210820.1.exon.1	Cla97C11G210820.1.exon.1	exon
Cla97C11G210820.1.exon.2	Cla97C11G210820.1.exon.2	exon
Cla97C11G210820.1.exon.3	Cla97C11G210820.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G210820.1.CDS.1	Cla97C11G210820.1.CDS.1	CDS
Cla97C11G210820.1.CDS.2	Cla97C11G210820.1.CDS.2	CDS
Cla97C11G210820.1.CDS.3	Cla97C11G210820.1.CDS.3	CDS