Cla97C11G210820 (gene) Watermelon (97103) v2

Overview
NameCla97C11G210820
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr11 : 4177359 .. 4178272 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGTTACTCTCACGTGGGAATTGATGCAAATTATAGATAAGAATTGTATGGTTTTAAATTTTTAGATTGTCTTCAAAATCCCAACTCCATTAGAGCTTTCTCTCTTTCTCTGTATTCTGTGGATTCCTTCTGGGTTTTCCCCCCATTTTCTTTCTTTGAGATCCATTGATTTGTTTGTGTTTTTATTCTGTATAGTTCTTTGTTGTTGTGTTTTATCTTTCTGGGGTTTGAAGAAATTTCCATGAAAAGTTAGATTTGATGTTGTGTTGGTATTTGGGATTTTGCTTTGGGATTTTTGGGCTCCGCCGATCGGGTGCTGTTTTCGAGCTTTTTTGTTCCCTCCGACAACCACAACCACAACCGTCGCGGATTTCAGGGTAATTTTTATCTTAAACTATATACTTATGCTCAGTCACCTTTTTAATTTGTTTATTCAACTATGAACTTAAAATATTCAATTCTTGTCTCTGCATATGCTAAGAAAGTACACTCTGCTTGATTTCTTCTGCTGATCAGTTCTGCATGCAGGTTATGAGTAGCTCTATGTTGATTGCTTCTCCTATTTCTTCTTCTTCTTTTTGTGGGGATTTGGGGGAAACTTCTGATTGATGGTTTTTGTTGTGAATTGGTTGCTCTTAATGTGGTTTTGTGAATTTGGCTGTATATTAAGTAACTGGAGAATCTATGGTCTCGATGTTTGTTTTAATTTTAATATTTCATTAATCATTAGTAGGAAGCTTGTGAAGAAGTATGGAATTGAAAACCCTAGGAATTTGCCATCATGAGTTGAGTTTTTGTTTGTTTGTTGACATTCAATTGAACTTTTGATTAATTGGTGACTGAAAATTATGTTAGGTGCCAACGATACTTGATCTCGGTCACCGTAGAATCCGAAAAGTTCTGAATTGA

mRNA sequence

ATGGGATTTGATGTTGTGTTGGTATTTGGGATTTTGCTTTGGGATTTTTGGGCTCCGCCGATCGGGTGCTGTTTTCGAGCTTTTTTGTTCCCTCCGACAACCACAACCACAACCGTCGCGGATTTCAGGGTGCCAACGATACTTGATCTCGGTCACCGTAGAATCCGAAAAGTTCTGAATTGA

Coding sequence (CDS)

ATGGGATTTGATGTTGTGTTGGTATTTGGGATTTTGCTTTGGGATTTTTGGGCTCCGCCGATCGGGTGCTGTTTTCGAGCTTTTTTGTTCCCTCCGACAACCACAACCACAACCGTCGCGGATTTCAGGGTGCCAACGATACTTGATCTCGGTCACCGTAGAATCCGAAAAGTTCTGAATTGA

Protein sequence

MGFDVVLVFGILLWDFWAPPIGCCFRAFLFPPTTTTTTVADFRVPTILDLGHRRIRKVLN
Homology
[Close]
BLAST of Cla97C11G210820 vs. NCBI nr
Match: KGN61832.1 (hypothetical protein Csa_2G249865 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 3   FDVVLVFGI---LLWDFWAPPIGCCFRAFLFPPTXXXXXVADFRVPTILDLGHRRIRKVL 61
           FDVVLVFGI     W+FWAPPIGCCFRAFLFPPT     VADFRV T+L+       K L
Sbjct: 68  FDVVLVFGIWDFSFWNFWAPPIGCCFRAFLFPPT--TTTVADFRVTTVLEFVTVESEKAL 126

[Close]
BLAST of Cla97C11G210820 vs. TrEMBL
Match: tr|A0A0A0LM19|A0A0A0LM19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249865 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-11
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 3   FDVVLVFGI---LLWDFWAPPIGCCFRAFLFPPTXXXXXVADFRVPTILDLGHRRIRKVL 61
           FDVVLVFGI     W+FWAPPIGCCFRAFLFPPT     VADFRV T+L+       K L
Sbjct: 68  FDVVLVFGIWDFSFWNFWAPPIGCCFRAFLFPPT--TTTVADFRVTTVLEFVTVESEKAL 126

The following BLAST results are available for this feature:
BLAST of Cla97C11G210820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61832.11.2e-1063.93hypothetical protein Csa_2G249865 [Cucumis sativus][more]
BLAST of Cla97C11G210820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LM19|A0A0A0LM19_CUCSA7.8e-1163.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249865 PE=4 SV=1[more]
BLAST of Cla97C11G210820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C11G210820 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G210820.1Cla97C11G210820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C11G210820CSPI02G12550Wild cucumber (PI 183967)cpiwmbB112
Cla97C11G210820CsaV3_2G015090Cucumber (Chinese Long) v3cucwmbB115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G210820Watermelon (97103) v2wmbwmbB065
Cla97C11G210820Silver-seed gourdcarwmbB0110
Cla97C11G210820Silver-seed gourdcarwmbB0311
Cla97C11G210820Silver-seed gourdcarwmbB0323
Cla97C11G210820Silver-seed gourdcarwmbB0993
Cla97C11G210820Cucumber (Gy14) v2cgybwmbB105
Cla97C11G210820Cucumber (Gy14) v2cgybwmbB492
Cla97C11G210820Cucumber (Gy14) v1cgywmbB150
Cla97C11G210820Cucumber (Gy14) v1cgywmbB584
Cla97C11G210820Cucumber (Gy14) v1cgywmbB646
Cla97C11G210820Cucurbita maxima (Rimu)cmawmbB457
Cla97C11G210820Cucurbita maxima (Rimu)cmawmbB567
Cla97C11G210820Cucurbita maxima (Rimu)cmawmbB613
Cla97C11G210820Cucurbita moschata (Rifu)cmowmbB438
Cla97C11G210820Cucurbita moschata (Rifu)cmowmbB544
Cla97C11G210820Cucurbita moschata (Rifu)cmowmbB587
Cla97C11G210820Wild cucumber (PI 183967)cpiwmbB199
Cla97C11G210820Wild cucumber (PI 183967)cpiwmbB543
Cla97C11G210820Cucumber (Chinese Long) v3cucwmbB196
Cla97C11G210820Cucumber (Chinese Long) v3cucwmbB539
Cla97C11G210820Cucumber (Chinese Long) v2cuwmbB110
Cla97C11G210820Cucumber (Chinese Long) v2cuwmbB519
Cla97C11G210820Bottle gourd (USVL1VR-Ls)lsiwmbB043
Cla97C11G210820Bottle gourd (USVL1VR-Ls)lsiwmbB080
Cla97C11G210820Melon (DHL92) v3.6.1medwmbB082
Cla97C11G210820Melon (DHL92) v3.6.1medwmbB162
Cla97C11G210820Melon (DHL92) v3.5.1mewmbB089
Cla97C11G210820Melon (DHL92) v3.5.1mewmbB176
Cla97C11G210820Watermelon (Charleston Gray)wcgwmbB065
Cla97C11G210820Watermelon (Charleston Gray)wcgwmbB137
Cla97C11G210820Watermelon (97103) v1wmwmbB315
Cla97C11G210820Watermelon (97103) v1wmwmbB361
Cla97C11G210820Wax gourdwgowmbB352