Cla97C05G102240.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C05G102240.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 30561915 .. 30562599 (-)
Sequence length333
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAATGGGGAGTTGGCGTGGGGCGACGTGCAGGGCATGCGTGGGCGATGGATGATGGCACAGTTTGTTGCGTTCGTTTTACTGTGGTGAAGGTCGTTCTCATATCTTCAATTCCCTTTTGCGGTTTCGTTACTTTTACCTTTTTGCTTTTTTTACCCTGATTTTGTTTCCTTTTCTAGTGAATTTCTATGGCGGCGATTTTTTCTCAGGATATTAAATGAGTATAATTAAGTTCAGTGGTGCCTGTAATTCGTTTCTTTTTTGATTTAGGACGCGTGTTGTTACTTTGTTATTTGTTTTTTTTTTTCATTTTTTGTAACCCTTGACGCCATAGAAACGTGAAAAATAAAACATTTATGTAAGGAAAAAATTTGGGGTATTCTTCTTCCACCTACAATTTCATTGGGGGTGGCAAAGTATGATTTTGCCACGTACCCAAGTAAAGGAAAATCGAAAAGGATGGAACTTTGGAACACCCATCTGGGATTTTATATATATATATATATTTTTTTTGTCCAAGTGGCTGCAAAATGTGGTAGGGGAAAAAAGATACGACTTTTGTGGACTCTTTCCGCAAGGAAGGAACGATGTAATTTGGTGCACAAAGCAATTCCAAGCAAAGCCACCGCGTCCGGAATATTCTCAAAAAAAGGAAAAAACTTGCCATTAGTTGCGGCATAA

mRNA sequence

ATGGAGAAATGGGGAGTTGGCGTGGGGCGACGTGCAGGGCATGCGTGGGCGATGGATGATGGCACAGTTTGTTGCGTTCGTTTTACTGTGGTGAAGGAAAAAATTTGGGGTATTCTTCTTCCACCTACAATTTCATTGGGGGTGGCAAAGTATGATTTTGCCACGTACCCAATGGCTGCAAAATGTGGTAGGGGAAAAAAGATACGACTTTTGTGGACTCTTTCCGCAAGGAAGGAACGATGTAATTTGGTGCACAAAGCAATTCCAAGCAAAGCCACCGCGTCCGGAATATTCTCAAAAAAAGGAAAAAACTTGCCATTAGTTGCGGCATAA

Coding sequence (CDS)

ATGGAGAAATGGGGAGTTGGCGTGGGGCGACGTGCAGGGCATGCGTGGGCGATGGATGATGGCACAGTTTGTTGCGTTCGTTTTACTGTGGTGAAGGAAAAAATTTGGGGTATTCTTCTTCCACCTACAATTTCATTGGGGGTGGCAAAGTATGATTTTGCCACGTACCCAATGGCTGCAAAATGTGGTAGGGGAAAAAAGATACGACTTTTGTGGACTCTTTCCGCAAGGAAGGAACGATGTAATTTGGTGCACAAAGCAATTCCAAGCAAAGCCACCGCGTCCGGAATATTCTCAAAAAAAGGAAAAAACTTGCCATTAGTTGCGGCATAA

Protein sequence

MEKWGVGVGRRAGHAWAMDDGTVCCVRFTVVKEKIWGILLPPTISLGVAKYDFATYPMAAKCGRGKKIRLLWTLSARKERCNLVHKAIPSKATASGIFSKKGKNLPLVAA
Homology
[Close]
BLAST of Cla97C05G102240.1 vs. NCBI nr
Match: KGN55264.1 (hypothetical protein Csa_4G642450 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 0 

Query: 38  ILLPPTISLGVAKYDFATYPMAAKCGRGKKIRLLWTLSARKERCNLVHKAIPSKATASGI 97
           ++LPP I LG+AKYDFATYP   K  R K    +WTLSA KER     K + +K      
Sbjct: 8   VILPPAIPLGLAKYDFATYP---KKKRKKDTTFVWTLSASKERSGFGAKQLEAKPPRPE- 67

Query: 98  FSKKGKNLPLVAA 111
           +S+K   LP+  A
Sbjct: 68  YSQKRNKLPMSCA 76

[Close]
BLAST of Cla97C05G102240.1 vs. TrEMBL
Match: tr|A0A0A0L2J9|A0A0A0L2J9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642450 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-05
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 0 

Query: 38  ILLPPTISLGVAKYDFATYPMAAKCGRGKKIRLLWTLSARKERCNLVHKAIPSKATASGI 97
           ++LPP I LG+AKYDFATYP   K  R K    +WTLSA KER     K + +K      
Sbjct: 8   VILPPAIPLGLAKYDFATYP---KKKRKKDTTFVWTLSASKERSGFGAKQLEAKPPRPE- 67

Query: 98  FSKKGKNLPLVAA 111
           +S+K   LP+  A
Sbjct: 68  YSQKRNKLPMSCA 76

The following BLAST results are available for this feature:
BLAST of Cla97C05G102240.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55264.18.0e-0545.21hypothetical protein Csa_4G642450 [Cucumis sativus][more]
BLAST of Cla97C05G102240.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2J9|A0A0A0L2J9_CUCSA5.3e-0545.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642450 PE=4 SV=1[more]
BLAST of Cla97C05G102240.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G102240.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C05G102240Cla97C05G102240gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C05G102240.1Cla97C05G102240.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G102240.1.CDS.3Cla97C05G102240.1.CDS.3CDS
Cla97C05G102240.1.CDS.2Cla97C05G102240.1.CDS.2CDS
Cla97C05G102240.1.CDS.1Cla97C05G102240.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G102240.1.exon.3Cla97C05G102240.1.exon.3exon
Cla97C05G102240.1.exon.2Cla97C05G102240.1.exon.2exon
Cla97C05G102240.1.exon.1Cla97C05G102240.1.exon.1exon