Cla97C05G091280.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C05G091280.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 9309979 .. 9310711 (+)
Sequence length312
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAGAAGATGCTCCAACCTCTGAAAGGTATTTGATATCATTTTTTTCTTTTACTGAAGAAAGAGGAGTTGTTTTTTCGGTTTTTAGTTATGAATTAGGAAATGGGTTTTGATGGGTACATTGATTTGGGTTATTATTGTTTCTTCTTTGTAGATTGTGTTTATTGCTATTACTGTGCATTGCTCGCAACCCTTTTGTTTTCTGTTTCAAAAGGTAAGAAGTAAAAGACATAATCATCTTGTGAGAACTGAAAGTAACTTGCAGATGCAGCCTTTTGGAATAGGTCTCATTATGCCTTGAAAAGGAACAATATATGGTGTAGTTTTATGCTGGCAGACCAATGTGGAAAAGAATAGTATTATAGAGGACTTTTTTTGTGCATAAAAGTTGCCTTTTCTCTCTTCAGTTTACATTTAGTTGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAACGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAAACAAGTGGGGTTGATTGCAGTCTGTCTTTTCCCTGAAAACCAGGGACAATTCTCTTTTATTCTTTTTCTTTTTTTCTCTTTTTTATGACTTGTATTTTGTTTTAGTTTGGCTTCTACATGTTCTTCAGACTCAGGCACATGTAAAAGCAACTATACTTTTGGCATTTCATGTTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTATGA

mRNA sequence

ATGCACAAGAAGATGCTCCAACCTCTGAAAGATTGTGTTTATTGCTATTACTGTGCATTGCTCGCAACCCTTTTGTTTTCTGTTTCAAAAGGTAAGAATTTACATTTAGTTGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAACGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAAACAAGTGGGGTTGATTGCAACTCAGGCACATGTAAAAGCAACTATACTTTTGGCATTTCATGTTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTATGA

Coding sequence (CDS)

ATGCACAAGAAGATGCTCCAACCTCTGAAAGATTGTGTTTATTGCTATTACTGTGCATTGCTCGCAACCCTTTTGTTTTCTGTTTCAAAAGGTAAGAATTTACATTTAGTTGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAACGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAAACAAGTGGGGTTGATTGCAACTCAGGCACATGTAAAAGCAACTATACTTTTGGCATTTCATGTTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTATGA

Protein sequence

MHKKMLQPLKDCVYCYYCALLATLLFSVSKGKNLHLVVTNSQKTLCLLYQRGDGVGGDGKGEKQVGLIATQAHVKATILLAFHVLVDNLIALIHLAYYNFMIL
Homology
[Close]
BLAST of Cla97C05G091280.1 vs. NCBI nr
Match: KGN57663.1 (hypothetical protein Csa_3G239270 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 49/91 (53.85%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 13  VYCYYCALLATLLFSVSKGKNLHLVVTNSQKTLCLLYQRGDGVGGDGKGEKQVGLIATQA 72
           VYC +CALLATLLFS SK K                   GDGV    KGE+Q     TQA
Sbjct: 125 VYCCHCALLATLLFSASKEK-----------------IGGDGVXXXXKGERQ-----TQA 184

Query: 73  HVKATILLAFHVLVDNLIALIHLAYYNFMIL 104
           HVKA ++L FH LVD LIA IHLAYYN  IL
Sbjct: 185 HVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

[Close]
BLAST of Cla97C05G091280.1 vs. TrEMBL
Match: tr|A0A0A0L7A5|A0A0A0L7A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-10
Identity = 49/91 (53.85%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 13  VYCYYCALLATLLFSVSKGKNLHLVVTNSQKTLCLLYQRGDGVGGDGKGEKQVGLIATQA 72
           VYC +CALLATLLFS SK K                   GDGV    KGE+Q     TQA
Sbjct: 125 VYCCHCALLATLLFSASKEK-----------------IGGDGVXXXXKGERQ-----TQA 184

Query: 73  HVKATILLAFHVLVDNLIALIHLAYYNFMIL 104
           HVKA ++L FH LVD LIA IHLAYYN  IL
Sbjct: 185 HVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

The following BLAST results are available for this feature:
BLAST of Cla97C05G091280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57663.17.7e-1053.85hypothetical protein Csa_3G239270 [Cucumis sativus][more]
BLAST of Cla97C05G091280.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7A5|A0A0A0L7A5_CUCSA5.1e-1053.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1[more]
BLAST of Cla97C05G091280.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G091280.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C05G091280Cla97C05G091280gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C05G091280.1Cla97C05G091280.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G091280.1.exon.1Cla97C05G091280.1.exon.1exon
Cla97C05G091280.1.exon.2Cla97C05G091280.1.exon.2exon
Cla97C05G091280.1.exon.3Cla97C05G091280.1.exon.3exon
Cla97C05G091280.1.exon.4Cla97C05G091280.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G091280.1.CDS.1Cla97C05G091280.1.CDS.1CDS
Cla97C05G091280.1.CDS.2Cla97C05G091280.1.CDS.2CDS
Cla97C05G091280.1.CDS.3Cla97C05G091280.1.CDS.3CDS
Cla97C05G091280.1.CDS.4Cla97C05G091280.1.CDS.4CDS