Cla97C05G089240.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G089240.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	glucose and ribitol dehydrogenase homolog 1-like
Location	Cla97Chr05 : 7460048 .. 7460227 (-)
Sequence length	180

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

mRNA sequence

ATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

Coding sequence (CDS)

ATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

Protein sequence

MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQAPFLSLSLLPTSLSLISY

Homology

[Close]

BLAST of Cla97C05G089240.1 vs. NCBI nr
Match: KGN57282.1 (hypothetical protein Csa_3G176290 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1  MASEAQQ-FPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQA 43
          MASE QQ FPPQKQQAQPGKQHAMDPTPQFT+ DY PANKLQA
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQA 43

[Close]

BLAST of Cla97C05G089240.1 vs. NCBI nr
Match: XP_022922637.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE +QFPPQKQQAQPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 46 MASEGRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240.1 vs. NCBI nr
Match: XP_022985493.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE +QFPPQKQQAQPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 46 MASEGRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240.1 vs. NCBI nr
Match: XP_004148135.1 (PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MASEAQQ-FPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE QQ FPPQKQQAQPGKQHAMDPTPQFT+ DY PANKLQ
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQ 42

[Close]

BLAST of Cla97C05G089240.1 vs. NCBI nr
Match: XP_022140852.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE + FPPQKQQAQPGK+H MDPTPQFT+ DYKPANKLQ
Sbjct: 40 MASERKNFPPQKQQAQPGKEHVMDPTPQFTSPDYKPANKLQ 80

[Close]

BLAST of Cla97C05G089240.1 vs. TrEMBL
Match: tr|A0A0A0L9H4|A0A0A0L9H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176290 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1  MASEAQQ-FPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQA 43
          MASE QQ FPPQKQQAQPGKQHAMDPTPQFT+ DY PANKLQA
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQA 43

[Close]

BLAST of Cla97C05G089240.1 vs. TrEMBL
Match: tr|A0A1S3AYK5|A0A1S3AYK5_CUCME (glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103483994 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-10
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MASEA-QQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE  QQFPPQKQQAQPGK+HAMDPTPQFT+ DY PANKLQ
Sbjct: 55 MASEGQQQFPPQKQQAQPGKEHAMDPTPQFTSPDYNPANKLQ 96

[Close]

BLAST of Cla97C05G089240.1 vs. TrEMBL
Match: tr|A0A2H5P9V5|A0A2H5P9V5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_116980 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQAPF 45
          MAS  QQFPPQKQ+AQPGK+H M+PTPQFT+ DYKP+NKL+  F
Sbjct: 52 MASGNQQFPPQKQEAQPGKEHVMEPTPQFTSHDYKPSNKLRVRF 95

[Close]

BLAST of Cla97C05G089240.1 vs. TrEMBL
Match: tr|A0A2P5B594|A0A2P5B594_9ROSA (Short-chain dehydrogenase/reductase OS=Trema orientalis OX=63057 GN=TorRG33x02_332430 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQA 43
          MAS+ QQFPPQ+Q+ QPGK+HAMDP PQFT+ +YKP+NKL+A
Sbjct: 1  MASQGQQFPPQRQETQPGKEHAMDPNPQFTSPEYKPSNKLRA 42

[Close]

BLAST of Cla97C05G089240.1 vs. TrEMBL
Match: tr|A0A161XCQ0|A0A161XCQ0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022182 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MAS+  QFPPQKQ AQPGK+H MDPTPQ T+ DYKPANKLQ
Sbjct: 50 MASQGSQFPPQKQDAQPGKEHVMDPTPQATSHDYKPANKLQ 90

[Close]

BLAST of Cla97C05G089240.1 vs. Swiss-Prot
Match: sp|Q5KTS5|GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 7  QFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          QFPPQKQ++QPGK+H MDP+PQ  +  YKPANKLQ
Sbjct: 6  QFPPQKQESQPGKEHLMDPSPQHASPHYKPANKLQ 40

[Close]

BLAST of Cla97C05G089240.1 vs. Swiss-Prot
Match: sp|Q9MA93|GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 5  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKL 41
          A  FPPQKQ+ QPG QH M+PTP+F++S+YKP+NKL
Sbjct: 2  ASGFPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cla97C05G089240.1 vs. Swiss-Prot
Match: sp|Q75KH3|GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-07
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 5  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          +QQFPPQ Q+ QPGK+HAMDP P+     YKPANKL+
Sbjct: 3  SQQFPPQNQETQPGKEHAMDPRPEAIIQSYKPANKLK 39

[Close]

BLAST of Cla97C05G089240.1 vs. Swiss-Prot
Match: sp|Q9FZ42|ADRC1_ARATH (NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ChlADR1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.5e-05
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE      QKQ AQPGK+H M+ +PQF++SDY+P+NKL+
Sbjct: 1  MASE-----KQKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 36

[Close]

BLAST of Cla97C05G089240.1 vs. TAIR10
Match: AT3G05260.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.0e-08
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 5  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKL 41
          A  FPPQKQ+ QPG QH M+PTP+F++S+YKP+NKL
Sbjct: 2  ASGFPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cla97C05G089240.1 vs. TAIR10
Match: AT1G54870.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 3.6e-06
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE      QKQ AQPGK+H M+ +PQF++SDY+P+NKL+
Sbjct: 48 MASE-----KQKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 83

The following BLAST results are available for this feature:

BLAST of Cla97C05G089240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57282.1	2.0e-10	88.37	hypothetical protein Csa_3G176290 [Cucumis sativus]	[more]
XP_022922637.1	2.6e-10	82.93	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022985493.1	2.6e-10	82.93	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima]	[more]
XP_004148135.1	5.8e-10	88.10	PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis sativus]	[more]
XP_022140852.1	5.8e-10	82.93	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Momordica charantia]	[more]

BLAST of Cla97C05G089240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9H4\|A0A0A0L9H4_CUCSA	1.3e-10	88.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176290 PE=4 SV=1	[more]
tr\|A0A1S3AYK5\|A0A1S3AYK5_CUCME	8.5e-10	85.71	glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2H5P9V5\|A0A2H5P9V5_CITUN	5.5e-09	72.73	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_116980 PE=4 SV=1	[more]
tr\|A0A2P5B594\|A0A2P5B594_9ROSA	7.2e-09	71.43	Short-chain dehydrogenase/reductase OS=Trema orientalis OX=63057 GN=TorRG33x02_3...	[more]
tr\|A0A161XCQ0\|A0A161XCQ0_DAUCA	7.2e-09	78.05	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022182 ...	[more]

BLAST of Cla97C05G089240.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5KTS5\|GRDH_DAUCA	1.1e-07	71.43	Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1	[more]
sp\|Q9MA93\|GRDH2_ARATH	5.3e-07	66.67	Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
sp\|Q75KH3\|GRDH_ORYSJ	7.0e-07	64.86	Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q9FZ42\|ADRC1_ARATH	6.5e-05	58.54	NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cla97C05G089240.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05260.1	3.0e-08	66.67	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G54870.1	3.6e-06	58.54	NAD(P)-binding Rossmann-fold superfamily protein	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C05G089240	Cla97C05G089240	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G089240.1.CDS.1	Cla97C05G089240.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G089240.1.exon.1	Cla97C05G089240.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C05G089240.1	Cla97C05G089240.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35