Cla97C05G089240 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G089240
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	glucose and ribitol dehydrogenase homolog 1-like
Location	Cla97Chr05 : 7460048 .. 7460227 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

mRNA sequence

ATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

Coding sequence (CDS)

ATGGCATCTGAGGCCCAACAGTTTCCTCCACAGAAGCAACAAGCTCAACCTGGCAAACAGCACGCCATGGACCCGACTCCACAGTTCACTACCTCAGATTATAAGCCTGCCAATAAGCTTCAGGCACCCTTTCTCTCTCTTTCCCTTCTTCCTACTTCACTCTCCTTAATATCATACTAA

Protein sequence

MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQAPFLSLSLLPTSLSLISY

Homology

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: KGN57282.1 (hypothetical protein Csa_3G176290 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1  MASEAQQ-FPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQA 43
          MASE QQ FPPQKQQAQPGKQHAMDPTPQFT+ DY PANKLQA
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQA 43

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_022922637.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE +QFPPQKQQAQPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 46 MASEGRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_022985493.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE +QFPPQKQQAQPGK+H MDPTPQFT+ DY+PANKLQ
Sbjct: 46 MASEGRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_004148135.1 (PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MASEAQQ-FPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE QQ FPPQKQQAQPGKQHAMDPTPQFT+ DY PANKLQ
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQ 42

[Close]

BLAST of Cla97C05G089240 vs. NCBI nr
Match: XP_022140852.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE + FPPQKQQAQPGK+H MDPTPQFT+ DYKPANKLQ
Sbjct: 40 MASERKNFPPQKQQAQPGKEHVMDPTPQFTSPDYKPANKLQ 80

[Close]

BLAST of Cla97C05G089240 vs. TrEMBL
Match: tr|A0A0A0L9H4|A0A0A0L9H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176290 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1  MASEAQQ-FPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQA 43
          MASE QQ FPPQKQQAQPGKQHAMDPTPQFT+ DY PANKLQA
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQA 43

[Close]

BLAST of Cla97C05G089240 vs. TrEMBL
Match: tr|A0A1S3AYK5|A0A1S3AYK5_CUCME (glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103483994 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-10
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MASEA-QQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE  QQFPPQKQQAQPGK+HAMDPTPQFT+ DY PANKLQ
Sbjct: 55 MASEGQQQFPPQKQQAQPGKEHAMDPTPQFTSPDYNPANKLQ 96

[Close]

BLAST of Cla97C05G089240 vs. TrEMBL
Match: tr|A0A2H5P9V5|A0A2H5P9V5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_116980 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQAPF 45
          MAS  QQFPPQKQ+AQPGK+H M+PTPQFT+ DYKP+NKL+  F
Sbjct: 52 MASGNQQFPPQKQEAQPGKEHVMEPTPQFTSHDYKPSNKLRVRF 95

[Close]

BLAST of Cla97C05G089240 vs. TrEMBL
Match: tr|A0A2P5B594|A0A2P5B594_9ROSA (Short-chain dehydrogenase/reductase OS=Trema orientalis OX=63057 GN=TorRG33x02_332430 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQA 43
          MAS+ QQFPPQ+Q+ QPGK+HAMDP PQFT+ +YKP+NKL+A
Sbjct: 1  MASQGQQFPPQRQETQPGKEHAMDPNPQFTSPEYKPSNKLRA 42

[Close]

BLAST of Cla97C05G089240 vs. TrEMBL
Match: tr|A0A161XCQ0|A0A161XCQ0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022182 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-09
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MAS+  QFPPQKQ AQPGK+H MDPTPQ T+ DYKPANKLQ
Sbjct: 50 MASQGSQFPPQKQDAQPGKEHVMDPTPQATSHDYKPANKLQ 90

[Close]

BLAST of Cla97C05G089240 vs. Swiss-Prot
Match: sp|Q5KTS5|GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 7  QFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          QFPPQKQ++QPGK+H MDP+PQ  +  YKPANKLQ
Sbjct: 6  QFPPQKQESQPGKEHLMDPSPQHASPHYKPANKLQ 40

[Close]

BLAST of Cla97C05G089240 vs. Swiss-Prot
Match: sp|Q9MA93|GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 5  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKL 41
          A  FPPQKQ+ QPG QH M+PTP+F++S+YKP+NKL
Sbjct: 2  ASGFPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cla97C05G089240 vs. Swiss-Prot
Match: sp|Q75KH3|GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-07
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 5  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          +QQFPPQ Q+ QPGK+HAMDP P+     YKPANKL+
Sbjct: 3  SQQFPPQNQETQPGKEHAMDPRPEAIIQSYKPANKLK 39

[Close]

BLAST of Cla97C05G089240 vs. Swiss-Prot
Match: sp|Q9FZ42|ADRC1_ARATH (NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ChlADR1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.5e-05
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE      QKQ AQPGK+H M+ +PQF++SDY+P+NKL+
Sbjct: 1  MASE-----KQKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 36

[Close]

BLAST of Cla97C05G089240 vs. TAIR10
Match: AT3G05260.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.0e-08
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 5  AQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKL 41
          A  FPPQKQ+ QPG QH M+PTP+F++S+YKP+NKL
Sbjct: 2  ASGFPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cla97C05G089240 vs. TAIR10
Match: AT1G54870.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 3.6e-06
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MASEAQQFPPQKQQAQPGKQHAMDPTPQFTTSDYKPANKLQ 42
          MASE      QKQ AQPGK+H M+ +PQF++SDY+P+NKL+
Sbjct: 48 MASE-----KQKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 83

The following BLAST results are available for this feature:

BLAST of Cla97C05G089240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57282.1	2.0e-10	88.37	hypothetical protein Csa_3G176290 [Cucumis sativus]	[more]
XP_022922637.1	2.6e-10	82.93	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022985493.1	2.6e-10	82.93	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima]	[more]
XP_004148135.1	5.8e-10	88.10	PREDICTED: glucose and ribitol dehydrogenase homolog 1-like [Cucumis sativus]	[more]
XP_022140852.1	5.8e-10	82.93	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Momordica charantia]	[more]

BLAST of Cla97C05G089240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9H4\|A0A0A0L9H4_CUCSA	1.3e-10	88.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176290 PE=4 SV=1	[more]
tr\|A0A1S3AYK5\|A0A1S3AYK5_CUCME	8.5e-10	85.71	glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2H5P9V5\|A0A2H5P9V5_CITUN	5.5e-09	72.73	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_116980 PE=4 SV=1	[more]
tr\|A0A2P5B594\|A0A2P5B594_9ROSA	7.2e-09	71.43	Short-chain dehydrogenase/reductase OS=Trema orientalis OX=63057 GN=TorRG33x02_3...	[more]
tr\|A0A161XCQ0\|A0A161XCQ0_DAUCA	7.2e-09	78.05	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022182 ...	[more]

BLAST of Cla97C05G089240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5KTS5\|GRDH_DAUCA	1.1e-07	71.43	Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1	[more]
sp\|Q9MA93\|GRDH2_ARATH	5.3e-07	66.67	Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
sp\|Q75KH3\|GRDH_ORYSJ	7.0e-07	64.86	Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q9FZ42\|ADRC1_ARATH	6.5e-05	58.54	NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cla97C05G089240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05260.1	3.0e-08	66.67	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G54870.1	3.6e-06	58.54	NAD(P)-binding Rossmann-fold superfamily protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G089240.1	Cla97C05G089240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G089240	Watermelon (97103) v2	wmbwmbB023
Cla97C05G089240	Silver-seed gourd	carwmbB0398
Cla97C05G089240	Silver-seed gourd	carwmbB0743
Cla97C05G089240	Silver-seed gourd	carwmbB0910
Cla97C05G089240	Silver-seed gourd	carwmbB0969
Cla97C05G089240	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G089240	Cucumber (Gy14) v2	cgybwmbB367
Cla97C05G089240	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G089240	Cucumber (Gy14) v1	cgywmbB522
Cla97C05G089240	Cucurbita maxima (Rimu)	cmawmbB304
Cla97C05G089240	Cucurbita maxima (Rimu)	cmawmbB346
Cla97C05G089240	Cucurbita maxima (Rimu)	cmawmbB649
Cla97C05G089240	Cucurbita maxima (Rimu)	cmawmbB651
Cla97C05G089240	Cucurbita maxima (Rimu)	cmawmbB767
Cla97C05G089240	Cucurbita moschata (Rifu)	cmowmbB286
Cla97C05G089240	Cucurbita moschata (Rifu)	cmowmbB331
Cla97C05G089240	Cucurbita moschata (Rifu)	cmowmbB621
Cla97C05G089240	Cucurbita moschata (Rifu)	cmowmbB624
Cla97C05G089240	Cucurbita moschata (Rifu)	cmowmbB739
Cla97C05G089240	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G089240	Wild cucumber (PI 183967)	cpiwmbB404
Cla97C05G089240	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G089240	Cucumber (Chinese Long) v3	cucwmbB400
Cla97C05G089240	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G089240	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G089240	Melon (DHL92) v3.6.1	medwmbB021
Cla97C05G089240	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G089240	Melon (DHL92) v3.5.1	mewmbB024
Cla97C05G089240	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G089240	Watermelon (Charleston Gray)	wcgwmbB109
Cla97C05G089240	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G089240	Watermelon (97103) v1	wmwmbB206
Cla97C05G089240	Watermelon (97103) v1	wmwmbB269
Cla97C05G089240	Wax gourd	wgowmbB178