Cla97C05G087590.1 (mRNA) Watermelon (97103) v2

NameCla97C05G087590.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 5782202 .. 5782591 (+)
Sequence length390
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

mRNA sequence

ATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Coding sequence (CDS)

ATGGAAGAGTTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAATCAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCATCTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGTATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG

Protein sequence

MEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK
BLAST of Cla97C05G087590.1 vs. NCBI nr
Match: XP_023526910.1 (uncharacterized protein LOC111790279 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 7.9e-12
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 2   EELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESK 61
           +ELE+K  +IE +YIQN   EKA+K+SRQ+  CE S P                    SK
Sbjct: 95  KELEEKAVEIEKRYIQNCHNEKARKQSRQVKICEISPP-------------------SSK 154

Query: 62  ILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLMA 121
           +L K K + ++C+V S+ NNK+    GGT         SKI KKA++E LQ IETKN +A
Sbjct: 155 VLKKPKVQTKVCQVSSVTNNKRSY-VGGT---------SKILKKARKETLQSIETKNAIA 193

Query: 122 FRRNVMQK 130
           FRRN +QK
Sbjct: 215 FRRNAVQK 193

BLAST of Cla97C05G087590.1 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 6.7e-11
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = 0

Query: 1   MEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNES 60
           ++ELE K  ++E +YI+N Q EKA+K+SRQ+  CE S                      S
Sbjct: 94  IKELEDKAVEVEKRYIRNCQNEKARKQSRQVKICEISP--------------------SS 153

Query: 61  KILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLM 120
           K+L K K   ++C+V S  NN K+   GGT         SKI KKA++E LQ IETKNL+
Sbjct: 154 KVLKKPKVHTKVCQV-SSANNNKRSYLGGT---------SKILKKARKETLQSIETKNLI 192

Query: 121 AFRRNVMQK 130
           AFRRN +QK
Sbjct: 214 AFRRNAIQK 192

BLAST of Cla97C05G087590.1 vs. NCBI nr
Match: XP_022979565.1 (uncharacterized protein LOC111479243 [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 6.7e-11
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 0

Query: 1   MEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNES 60
           ++ELE+K  +IE +YIQN Q EKA+K+SRQ+  CE S                      S
Sbjct: 94  IKELEEKAVEIEKRYIQNCQNEKARKQSRQVKICEISP--------------------SS 153

Query: 61  KILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREALQCIETKNLM 120
           K+L KSK   + C+V S  +N K+   GGT         SKI KKA++E LQ IETKN++
Sbjct: 154 KVLKKSKVHTKFCQV-SSAHNDKRSYLGGT---------SKILKKARKETLQSIETKNVI 192

Query: 121 AFRRNVMQK 130
           AFRRN +QK
Sbjct: 214 AFRRNTVQK 192

BLAST of Cla97C05G087590.1 vs. TrEMBL
Match: tr|A0A0A0KJR8|A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.9e-04
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 1   MEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFC-EGSSPINKKLGFEGKPNEFGCNTNE 60
           M+ELE + KKIE + IQ+ QKEKA+K+SRQI+FC    S ++ K     +   F  NT +
Sbjct: 100 MKELENRAKKIEDRIIQSYQKEKARKQSRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTK 159

Query: 61  SKILNKSKREEQICKVPSMINNK 83
           S  L K+KRE  + KV +  N +
Sbjct: 160 SVTLKKAKRELHVPKVSTSSNKE 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023526910.17.9e-1243.75uncharacterized protein LOC111790279 [Cucurbita pepo subsp. pepo][more]
XP_022979571.16.7e-1142.64uncharacterized protein LOC111479252 [Cucurbita maxima][more]
XP_022979565.16.7e-1143.41uncharacterized protein LOC111479243 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
tr|A0A0A0KJR8|A0A0A0KJR8_CUCSA6.9e-0443.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511010 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C05G087590Cla97C05G087590gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G087590.1.exon.1Cla97C05G087590.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G087590.1.CDS.1Cla97C05G087590.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C05G087590.1Cla97C05G087590.1-proteinpolypeptide


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..96