Cla97C02G033920.1 (mRNA) Watermelon (97103) v2

NameCla97C02G033920.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionGlycine-rich protein A3
LocationCla97Chr02 : 7559594 .. 7560027 (-)
Sequence length246
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTACTACGCCCAGCCACCGCCCCCCGTCGGCGTTCCTCCGCCGCAAGGTAACATCTGAAAGCCATTACTCTTTCCTCTCTTACTTCCGCTACACTTTCTTGAAATTCTAGATCCAAATCCAATGGATCTTACTTTTTTTTTCCGCAAAGTTGATCTACCCTTTGTTTTCATCTCGCTTTCGCGCTTTGATTTGACCCATTTTTGGCTGCGATTCGTTGAATTTTGACGATTTTAGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCCGCAGGGATATCCACCTCCGCCGGCGTATGGTGCTCCGTACGGTCATCCTCCACCTCAACATCAAAACCAAAATAAAGAAGTTGGATTCGTCGAAGGCTGGTAA

mRNA sequence

ATGAGTTACTACGCCCAGCCACCGCCCCCCGTCGGCGTTCCTCCGCCGCAAGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCCGCAGGGATATCCACCTCCGCCGGCGTATGGTGCTCCGTACGGTCATCCTCCACCTCAACATCAAAACCAAAATAAAGAAGTTGGATTCGTCGAAGGCTGGTAA

Coding sequence (CDS)

ATGAGTTACTACGCCCAGCCACCGCCCCCCGTCGGCGTTCCTCCGCCGCAAGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCCGCAGGGATATCCACCTCCGCCGGCGTATGGTGCTCCGTACGGTCATCCTCCACCTCAACATCAAAACCAAAATAAAGAAGTTGGATTCGTCGAAGGCTGGTAA

Protein sequence

MSYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPPGYPPQGGYPPAGYPPQGYPPPPAYGAPYGHPPPQHQNQNKEVGFVEGW
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C02G033920Cla97C02G033920gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C02G033920.1.CDS.2Cla97C02G033920.1.CDS.2CDS
Cla97C02G033920.1.CDS.1Cla97C02G033920.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C02G033920.1.exon.2Cla97C02G033920.1.exon.2exon
Cla97C02G033920.1.exon.1Cla97C02G033920.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C02G033920.1Cla97C02G033920.1-proteinpolypeptide


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00239RHODOPSNTAILcoord: 40..52
score: 39.74
coord: 15..26
score: 94.44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81
NoneNo IPR availablePANTHERPTHR31568:SF3CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-RELATEDcoord: 1..81
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 1..81