Cla97C02G033920 (gene) Watermelon (97103) v2

NameCla97C02G033920
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionGlycine-rich protein A3
LocationCla97Chr02 : 7559594 .. 7560027 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTACTACGCCCAGCCACCGCCCCCCGTCGGCGTTCCTCCGCCGCAAGGTAACATCTGAAAGCCATTACTCTTTCCTCTCTTACTTCCGCTACACTTTCTTGAAATTCTAGATCCAAATCCAATGGATCTTACTTTTTTTTTCCGCAAAGTTGATCTACCCTTTGTTTTCATCTCGCTTTCGCGCTTTGATTTGACCCATTTTTGGCTGCGATTCGTTGAATTTTGACGATTTTAGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCCGCAGGGATATCCACCTCCGCCGGCGTATGGTGCTCCGTACGGTCATCCTCCACCTCAACATCAAAACCAAAATAAAGAAGTTGGATTCGTCGAAGGCTGGTAA

mRNA sequence

ATGAGTTACTACGCCCAGCCACCGCCCCCCGTCGGCGTTCCTCCGCCGCAAGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCCGCAGGGATATCCACCTCCGCCGGCGTATGGTGCTCCGTACGGTCATCCTCCACCTCAACATCAAAACCAAAATAAAGAAGTTGGATTCGTCGAAGGCTGGTAA

Coding sequence (CDS)

ATGAGTTACTACGCCCAGCCACCGCCCCCCGTCGGCGTTCCTCCGCCGCAAGGTTATCCACCGCAAGGATATCCTCCGAAGGACGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCCGCAGGGATATCCACCTCCGCCGGCGTATGGTGCTCCGTACGGTCATCCTCCACCTCAACATCAAAACCAAAATAAAGAAGTTGGATTCGTCGAAGGCTGGTAA

Protein sequence

MSYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPPGYPPQGGYPPAGYPPQGYPPPPAYGAPYGHPPPQHQNQNKEVGFVEGW
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G033920.1Cla97C02G033920.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00239RHODOPSNTAILcoord: 40..52
score: 39.74
coord: 15..26
score: 94.44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81
NoneNo IPR availablePANTHERPTHR31568:SF3CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-RELATEDcoord: 1..81
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 1..81

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G033920Watermelon (97103) v2wmbwmbB048
Cla97C02G033920Silver-seed gourdcarwmbB0303
Cla97C02G033920Silver-seed gourdcarwmbB0394
Cla97C02G033920Silver-seed gourdcarwmbB0477
Cla97C02G033920Silver-seed gourdcarwmbB0766
Cla97C02G033920Cucumber (Gy14) v2cgybwmbB503
Cla97C02G033920Cucumber (Gy14) v1cgywmbB395
Cla97C02G033920Cucurbita maxima (Rimu)cmawmbB104
Cla97C02G033920Cucurbita maxima (Rimu)cmawmbB342
Cla97C02G033920Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G033920Cucurbita maxima (Rimu)cmawmbB744
Cla97C02G033920Cucurbita moschata (Rifu)cmowmbB088
Cla97C02G033920Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G033920Cucurbita moschata (Rifu)cmowmbB717
Cla97C02G033920Wild cucumber (PI 183967)cpiwmbB296
Cla97C02G033920Wild cucumber (PI 183967)cpiwmbB554
Cla97C02G033920Cucumber (Chinese Long) v3cucwmbB295
Cla97C02G033920Cucumber (Chinese Long) v3cucwmbB550
Cla97C02G033920Cucumber (Chinese Long) v2cuwmbB289
Cla97C02G033920Cucumber (Chinese Long) v2cuwmbB530
Cla97C02G033920Bottle gourd (USVL1VR-Ls)lsiwmbB226
Cla97C02G033920Bottle gourd (USVL1VR-Ls)lsiwmbB229
Cla97C02G033920Melon (DHL92) v3.6.1medwmbB166
Cla97C02G033920Melon (DHL92) v3.6.1medwmbB469
Cla97C02G033920Melon (DHL92) v3.5.1mewmbB180
Cla97C02G033920Melon (DHL92) v3.5.1mewmbB476
Cla97C02G033920Watermelon (Charleston Gray)wcgwmbB044
Cla97C02G033920Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G033920Watermelon (97103) v1wmwmbB063
Cla97C02G033920Watermelon (97103) v1wmwmbB317
Cla97C02G033920Wax gourdwgowmbB033
Cla97C02G033920Wax gourdwgowmbB253