Cla97C02G028770.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C02G028770.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionHomeobox-DDT domain protein RLT2
LocationCla97Chr02 : 2232552 .. 2233974 (+)
Sequence length501
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAACTTGTAGAGAACAATGGTCTGTCTTGGTGTTCATCTTCACCCTTGAGGATTAGATTGCTTAATATGTTGTTAACTTTGATTGAGGTGAGTTTTCCTTTAGCCGTATTGTAGCTTAAAACATTTATGTAGACTTTGTATTTAGTATCTGGTGCATAGGTTTCCATTCCAGGGGAAGCTTTCCAACTTCCAAAGAAAAACTTGGGGCTCAAAACTTCTGGCTTCATCATCTACTGAGGACCTTCTTCAGGTAGCCTAAGGACTAAATTGAAACCAAATTCAAAATATAAGGCCTAAATGTGTAACTTTTGGAACCTAGGGACCAAATAAAAACTAAACCTACATAAACCCTTATCCTTCACCACCCATGGATTGTCCAACCAATCACAACCCGGATTCTTCCACAAACAAACAACTATGTGCCTCCATCTAATACCAAGAAAACTATCTTCTGACCCGGTAAAAAGCATTCCACCGCCATTATTGCTCTTCCTTTTGATGCTGTTTCGAAAGCCTATCTTTCTAGCCCCATGCCTTACTCGCCACACTCTCTTAATGAACATCCCGAAGACAATTGGTATGATTTCATCCCTCGAGCAAGTTTAGATTCTTTCAATCCTACTCTCATTTGATGGCATTGGCTCATGTTTGGTTTATGCATAAAGGCGATCCCAGCTCACAAGCATCCAAACAGATTATCTACCAAGAAAAAAAAAGAGGGTTGAGAGAACTTCGAATAAGCTAAGGAATTGATGGAAGAAGGCCATCATCAACTTGATTATGCTTTTTAACTCTGCTTTGTCGATTTGAAAGGGGTTGATCGGACCTGTTCTTTATGGCTATCATTTGCGTTTCCTTGCCACCTTTGTTTCAGGGGCCCTCTGCTATCTTGTTTTTTATTCATTTTTCCTTCTTTTTTTCGTTGTATTTGCTCTCTTCCGCTTGGGCTTCATTTGTTATTAGTATTTCTCCATTTCATACTCTTTGGATTATTTCATTCATCAATGAAATGTTTCTTATCCAAAAAAATAATAATAATAAAACAATAAAAACTAAATTGAAAACCCAAGGCCTACAAAGATATTTTTCCCTTTATTCTATGAGTTATCCTTATTCATTGTCTTGGCGTCTTGGTTCTGATACTTTTTGGTTCTATCCTTGAAGATTTACAAAATCGTTAAGGGATTTTCTCACAAGGAGTATCAGAGGTGGGAAATCACAGAAAATATTCAATGACTTGAGGGCTGTATCTGGCAAGAAAAGTACTAGCACCAACGGGAAAATATTAAGGATGAACGGGGAGGATTTAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGGAAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTGAAGAAACTATCAATGAGATGTCAGAATTAG

mRNA sequence

ATGGCTCAACTTGTAGAGAACAATGGTCTGTCTTGGTGTTCATCTTCACCCTTGAGGATTAGATTGCTTAATATGTTGTTAACTTTGATTGAGGGGAAGCTTTCCAACTTCCAAAGAAAAACTTGGGGCTCAAAACTTCTGGCTTCATCATCTACTGAGGACCTTCTTCAGCATTCCACCGCCATTATTGCTCTTCCTTTTGATGCTGTTTCGAAAGCCTATCTTTCTAGCCCCATGCCTTACTCGCCACACTCTCTTAATGAACATCCCGAAGACAATTGGAGTATCAGAGGTGGGAAATCACAGAAAATATTCAATGACTTGAGGGCTGTATCTGGCAAGAAAAGTACTAGCACCAACGGGAAAATATTAAGGATGAACGGGGAGGATTTAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGGAAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTGAAGAAACTATCAATGAGATGTCAGAATTAG

Coding sequence (CDS)

ATGGCTCAACTTGTAGAGAACAATGGTCTGTCTTGGTGTTCATCTTCACCCTTGAGGATTAGATTGCTTAATATGTTGTTAACTTTGATTGAGGGGAAGCTTTCCAACTTCCAAAGAAAAACTTGGGGCTCAAAACTTCTGGCTTCATCATCTACTGAGGACCTTCTTCAGCATTCCACCGCCATTATTGCTCTTCCTTTTGATGCTGTTTCGAAAGCCTATCTTTCTAGCCCCATGCCTTACTCGCCACACTCTCTTAATGAACATCCCGAAGACAATTGGAGTATCAGAGGTGGGAAATCACAGAAAATATTCAATGACTTGAGGGCTGTATCTGGCAAGAAAAGTACTAGCACCAACGGGAAAATATTAAGGATGAACGGGGAGGATTTAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGGAAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTGAAGAAACTATCAATGAGATGTCAGAATTAG

Protein sequence

MAQLVENNGLSWCSSSPLRIRLLNMLLTLIEGKLSNFQRKTWGSKLLASSSTEDLLQHSTAIIALPFDAVSKAYLSSPMPYSPHSLNEHPEDNWSIRGGKSQKIFNDLRAVSGKKSTSTNGKILRMNGEDLGMVNGVLEASKHQQGRLSSAPREVILKKLSMRCQN
Homology
[Close]
BLAST of Cla97C02G028770.1 vs. NCBI nr
Match: XP_022968923.1 (LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0 

Query: 1    MAQLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSS 60
            M Q +EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS
Sbjct: 1322 MVQRIENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSS 1381

Query: 61   TEDLLQHSTAI 63
             ED+LQ  T +
Sbjct: 1382 AEDVLQILTLL 1392

[Close]
BLAST of Cla97C02G028770.1 vs. NCBI nr
Match: XP_022952970.1 (homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 62
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1292 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1351

[Close]
BLAST of Cla97C02G028770.1 vs. NCBI nr
Match: XP_022952971.1 (homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 62
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1259 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1318

[Close]
BLAST of Cla97C02G028770.1 vs. NCBI nr
Match: XP_022952972.1 (homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 58
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1292 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1351

[Close]
BLAST of Cla97C02G028770.1 vs. NCBI nr
Match: XP_023554341.1 (homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 62
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1259 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1318

[Close]
BLAST of Cla97C02G028770.1 vs. Swiss-Prot
Match: sp|Q9FFH1|RLT2_ARATH (Homeobox-DDT domain protein RLT2 OS=Arabidopsis thaliana OX=3702 GN=RLT2 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.1e-04
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 16   SPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTEDLLQHSTAIIALP 75
            SPLRIRLL + L L+E  L         +   RK+WG KLL+SSS EDL Q  T + A  
Sbjct: 1290 SPLRIRLLKVQLALVEASLPPEGLEAFWTENLRKSWGMKLLSSSSHEDLYQVLTTLEA-- 1349

Query: 76   FDAVSKAYLSS 78
              A+ + +LSS
Sbjct: 1350 --ALKRDFLSS 1356

[Close]
BLAST of Cla97C02G028770.1 vs. TAIR10
Match: AT5G44180.1 (Homeodomain-like transcriptional regulator)

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-05
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 16   SPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTEDLLQHSTAIIALP 75
            SPLRIRLL + L L+E  L         +   RK+WG KLL+SSS EDL Q  T + A  
Sbjct: 1290 SPLRIRLLKVQLALVEASLPPEGLEAFWTENLRKSWGMKLLSSSSHEDLYQVLTTLEA-- 1349

Query: 76   FDAVSKAYLSS 78
              A+ + +LSS
Sbjct: 1350 --ALKRDFLSS 1356

The following BLAST results are available for this feature:
BLAST of Cla97C02G028770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022968923.11.3e-1160.56LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima][more]
XP_022952970.12.3e-1162.32homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata][more]
XP_022952971.12.3e-1162.32homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata][more]
XP_022952972.12.3e-1165.63homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita moschata][more]
XP_023554341.12.3e-1162.32homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C02G028770.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C02G028770.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFH1|RLT2_ARATH9.1e-0445.07Homeobox-DDT domain protein RLT2 OS=Arabidopsis thaliana OX=3702 GN=RLT2 PE=1 SV... [more]
BLAST of Cla97C02G028770.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G44180.15.0e-0545.07Homeodomain-like transcriptional regulator[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009908 flower development
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C02G028770Cla97C02G028770gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C02G028770.1Cla97C02G028770.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C02G028770.1.exon.1Cla97C02G028770.1.exon.1exon
Cla97C02G028770.1.exon.2Cla97C02G028770.1.exon.2exon
Cla97C02G028770.1.exon.3Cla97C02G028770.1.exon.3exon
Cla97C02G028770.1.exon.4Cla97C02G028770.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C02G028770.1.CDS.1Cla97C02G028770.1.CDS.1CDS
Cla97C02G028770.1.CDS.2Cla97C02G028770.1.CDS.2CDS
Cla97C02G028770.1.CDS.3Cla97C02G028770.1.CDS.3CDS
Cla97C02G028770.1.CDS.4Cla97C02G028770.1.CDS.4CDS