Cla97C02G028770 (gene) Watermelon (97103) v2

Overview
NameCla97C02G028770
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionHomeobox-DDT domain protein RLT2
LocationCla97Chr02 : 2232552 .. 2233974 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAACTTGTAGAGAACAATGGTCTGTCTTGGTGTTCATCTTCACCCTTGAGGATTAGATTGCTTAATATGTTGTTAACTTTGATTGAGGTGAGTTTTCCTTTAGCCGTATTGTAGCTTAAAACATTTATGTAGACTTTGTATTTAGTATCTGGTGCATAGGTTTCCATTCCAGGGGAAGCTTTCCAACTTCCAAAGAAAAACTTGGGGCTCAAAACTTCTGGCTTCATCATCTACTGAGGACCTTCTTCAGGTAGCCTAAGGACTAAATTGAAACCAAATTCAAAATATAAGGCCTAAATGTGTAACTTTTGGAACCTAGGGACCAAATAAAAACTAAACCTACATAAACCCTTATCCTTCACCACCCATGGATTGTCCAACCAATCACAACCCGGATTCTTCCACAAACAAACAACTATGTGCCTCCATCTAATACCAAGAAAACTATCTTCTGACCCGGTAAAAAGCATTCCACCGCCATTATTGCTCTTCCTTTTGATGCTGTTTCGAAAGCCTATCTTTCTAGCCCCATGCCTTACTCGCCACACTCTCTTAATGAACATCCCGAAGACAATTGGTATGATTTCATCCCTCGAGCAAGTTTAGATTCTTTCAATCCTACTCTCATTTGATGGCATTGGCTCATGTTTGGTTTATGCATAAAGGCGATCCCAGCTCACAAGCATCCAAACAGATTATCTACCAAGAAAAAAAAAGAGGGTTGAGAGAACTTCGAATAAGCTAAGGAATTGATGGAAGAAGGCCATCATCAACTTGATTATGCTTTTTAACTCTGCTTTGTCGATTTGAAAGGGGTTGATCGGACCTGTTCTTTATGGCTATCATTTGCGTTTCCTTGCCACCTTTGTTTCAGGGGCCCTCTGCTATCTTGTTTTTTATTCATTTTTCCTTCTTTTTTTCGTTGTATTTGCTCTCTTCCGCTTGGGCTTCATTTGTTATTAGTATTTCTCCATTTCATACTCTTTGGATTATTTCATTCATCAATGAAATGTTTCTTATCCAAAAAAATAATAATAATAAAACAATAAAAACTAAATTGAAAACCCAAGGCCTACAAAGATATTTTTCCCTTTATTCTATGAGTTATCCTTATTCATTGTCTTGGCGTCTTGGTTCTGATACTTTTTGGTTCTATCCTTGAAGATTTACAAAATCGTTAAGGGATTTTCTCACAAGGAGTATCAGAGGTGGGAAATCACAGAAAATATTCAATGACTTGAGGGCTGTATCTGGCAAGAAAAGTACTAGCACCAACGGGAAAATATTAAGGATGAACGGGGAGGATTTAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGGAAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTGAAGAAACTATCAATGAGATGTCAGAATTAG

mRNA sequence

ATGGCTCAACTTGTAGAGAACAATGGTCTGTCTTGGTGTTCATCTTCACCCTTGAGGATTAGATTGCTTAATATGTTGTTAACTTTGATTGAGGGGAAGCTTTCCAACTTCCAAAGAAAAACTTGGGGCTCAAAACTTCTGGCTTCATCATCTACTGAGGACCTTCTTCAGCATTCCACCGCCATTATTGCTCTTCCTTTTGATGCTGTTTCGAAAGCCTATCTTTCTAGCCCCATGCCTTACTCGCCACACTCTCTTAATGAACATCCCGAAGACAATTGGAGTATCAGAGGTGGGAAATCACAGAAAATATTCAATGACTTGAGGGCTGTATCTGGCAAGAAAAGTACTAGCACCAACGGGAAAATATTAAGGATGAACGGGGAGGATTTAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGGAAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTGAAGAAACTATCAATGAGATGTCAGAATTAG

Coding sequence (CDS)

ATGGCTCAACTTGTAGAGAACAATGGTCTGTCTTGGTGTTCATCTTCACCCTTGAGGATTAGATTGCTTAATATGTTGTTAACTTTGATTGAGGGGAAGCTTTCCAACTTCCAAAGAAAAACTTGGGGCTCAAAACTTCTGGCTTCATCATCTACTGAGGACCTTCTTCAGCATTCCACCGCCATTATTGCTCTTCCTTTTGATGCTGTTTCGAAAGCCTATCTTTCTAGCCCCATGCCTTACTCGCCACACTCTCTTAATGAACATCCCGAAGACAATTGGAGTATCAGAGGTGGGAAATCACAGAAAATATTCAATGACTTGAGGGCTGTATCTGGCAAGAAAAGTACTAGCACCAACGGGAAAATATTAAGGATGAACGGGGAGGATTTAGGCATGGTCAACGGAGTGCTAGAAGCAAGCAAACATCAGCAAGGAAGATTAAGTTCAGCTCCGAGGGAAGTCATCTTGAAGAAACTATCAATGAGATGTCAGAATTAG

Protein sequence

MAQLVENNGLSWCSSSPLRIRLLNMLLTLIEGKLSNFQRKTWGSKLLASSSTEDLLQHSTAIIALPFDAVSKAYLSSPMPYSPHSLNEHPEDNWSIRGGKSQKIFNDLRAVSGKKSTSTNGKILRMNGEDLGMVNGVLEASKHQQGRLSSAPREVILKKLSMRCQN
Homology
[Close]
BLAST of Cla97C02G028770 vs. NCBI nr
Match: XP_022968923.1 (LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0 

Query: 1    MAQLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSS 60
            M Q +EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS
Sbjct: 1322 MVQRIENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSS 1381

Query: 61   TEDLLQHSTAI 63
             ED+LQ  T +
Sbjct: 1382 AEDVLQILTLL 1392

[Close]
BLAST of Cla97C02G028770 vs. NCBI nr
Match: XP_022952970.1 (homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 62
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1292 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1351

[Close]
BLAST of Cla97C02G028770 vs. NCBI nr
Match: XP_022952971.1 (homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 62
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1259 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1318

[Close]
BLAST of Cla97C02G028770 vs. NCBI nr
Match: XP_022952972.1 (homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 58
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1292 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1351

[Close]
BLAST of Cla97C02G028770 vs. NCBI nr
Match: XP_023554341.1 (homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 3    QLVENNGLSWCSSSPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTE 62
            QL+EN GLSWCSSSPLRIRLL MLLTLIE  +         ++F+RKTW SKLL+SSS E
Sbjct: 1259 QLLENIGLSWCSSSPLRIRLLKMLLTLIEVSIPGEAFQPSWTDFERKTWSSKLLSSSSAE 1318

[Close]
BLAST of Cla97C02G028770 vs. Swiss-Prot
Match: sp|Q9FFH1|RLT2_ARATH (Homeobox-DDT domain protein RLT2 OS=Arabidopsis thaliana OX=3702 GN=RLT2 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.1e-04
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 16   SPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTEDLLQHSTAIIALP 75
            SPLRIRLL + L L+E  L         +   RK+WG KLL+SSS EDL Q  T + A  
Sbjct: 1290 SPLRIRLLKVQLALVEASLPPEGLEAFWTENLRKSWGMKLLSSSSHEDLYQVLTTLEA-- 1349

Query: 76   FDAVSKAYLSS 78
              A+ + +LSS
Sbjct: 1350 --ALKRDFLSS 1356

[Close]
BLAST of Cla97C02G028770 vs. TAIR10
Match: AT5G44180.1 (Homeodomain-like transcriptional regulator)

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-05
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 16   SPLRIRLLNMLLTLIEGKL---------SNFQRKTWGSKLLASSSTEDLLQHSTAIIALP 75
            SPLRIRLL + L L+E  L         +   RK+WG KLL+SSS EDL Q  T + A  
Sbjct: 1290 SPLRIRLLKVQLALVEASLPPEGLEAFWTENLRKSWGMKLLSSSSHEDLYQVLTTLEA-- 1349

Query: 76   FDAVSKAYLSS 78
              A+ + +LSS
Sbjct: 1350 --ALKRDFLSS 1356

The following BLAST results are available for this feature:
BLAST of Cla97C02G028770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022968923.11.3e-1160.56LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima][more]
XP_022952970.12.3e-1162.32homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata][more]
XP_022952971.12.3e-1162.32homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata][more]
XP_022952972.12.3e-1165.63homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita moschata][more]
XP_023554341.12.3e-1162.32homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C02G028770 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C02G028770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFH1|RLT2_ARATH9.1e-0445.07Homeobox-DDT domain protein RLT2 OS=Arabidopsis thaliana OX=3702 GN=RLT2 PE=1 SV... [more]
BLAST of Cla97C02G028770 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G44180.15.0e-0545.07Homeodomain-like transcriptional regulator[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009908 flower development
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G028770.1Cla97C02G028770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G028770ClCG02G002330Watermelon (Charleston Gray)wcgwmbB138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G028770Silver-seed gourdcarwmbB0202
Cla97C02G028770Silver-seed gourdcarwmbB0348
Cla97C02G028770Silver-seed gourdcarwmbB1124
Cla97C02G028770Cucumber (Gy14) v2cgybwmbB118
Cla97C02G028770Cucumber (Gy14) v2cgybwmbB500
Cla97C02G028770Cucumber (Gy14) v2cgybwmbB502
Cla97C02G028770Cucumber (Gy14) v1cgywmbB326
Cla97C02G028770Cucurbita maxima (Rimu)cmawmbB105
Cla97C02G028770Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G028770Cucurbita maxima (Rimu)cmawmbB582
Cla97C02G028770Cucurbita maxima (Rimu)cmawmbB618
Cla97C02G028770Cucurbita moschata (Rifu)cmowmbB094
Cla97C02G028770Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G028770Cucurbita moschata (Rifu)cmowmbB552
Cla97C02G028770Wild cucumber (PI 183967)cpiwmbB126
Cla97C02G028770Wild cucumber (PI 183967)cpiwmbB552
Cla97C02G028770Wild cucumber (PI 183967)cpiwmbB553
Cla97C02G028770Cucumber (Chinese Long) v3cucwmbB127
Cla97C02G028770Cucumber (Chinese Long) v3cucwmbB548
Cla97C02G028770Cucumber (Chinese Long) v3cucwmbB549
Cla97C02G028770Cucumber (Chinese Long) v2cuwmbB124
Cla97C02G028770Cucumber (Chinese Long) v2cuwmbB527
Cla97C02G028770Cucumber (Chinese Long) v2cuwmbB529
Cla97C02G028770Bottle gourd (USVL1VR-Ls)lsiwmbB055
Cla97C02G028770Bottle gourd (USVL1VR-Ls)lsiwmbB086
Cla97C02G028770Melon (DHL92) v3.6.1medwmbB090
Cla97C02G028770Melon (DHL92) v3.6.1medwmbB164
Cla97C02G028770Melon (DHL92) v3.5.1mewmbB094
Cla97C02G028770Melon (DHL92) v3.5.1mewmbB178
Cla97C02G028770Watermelon (Charleston Gray)wcgwmbB150
Cla97C02G028770Watermelon (97103) v1wmwmbB317
Cla97C02G028770Wax gourdwgowmbB241
Cla97C02G028770Wax gourdwgowmbB376