Cla97C01G022090.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G022090.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	BnaC06g24790D protein
Location	Cla97Chr01 : 33971498 .. 33972296 (+)
Sequence length	369

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGCCCGACGAGTCACGAGCTTTGGCACCCTCCCGCGGAGAGTTGGAAAATGAACTCAAATGCATCTTGGAGTGAGGAGCTTGGGGTGGGTGGTATCAGTTGGATTATCCATGATTTTTCAGGATCTTTGATTGGAGGAGGTTGTCTTCGGATTGGCAAGTATTGAAAGATTAAAGTGTTGAAAATGAAGGCTATCGAGGAAGGTTTAAAAGCTCTCCGTTCTCGGTTCAGGATTGTCATCCTGCCGCTTTTGGTGGAATCTAATTCTGTTGAGGCGATCGTGTCCCTTTACGAGATTGATAGTGACCTCTCGGATATTAAATTTGTTGCTTGTAGTGTTCCGAAGCTAGCGGAAGATTTTGGGAACATACATTTTGCTTTTGATATTTTTAGTTTTTTTAGTTCTTTTTGCTTTTGATATTTTTAGTTTTTTTTAGTTCTTTTTGCTTTTGATGGACTGAATTTTAATGTTTTATTTGTGTTTTTTTATTATTCGGTGTTAATGTCTATTAATTAATTTAAAATAATTATAAAATAAAAGTTTAAATTTAATTAAAATAGTTTAATCAACTATAATTCATTTAATTTAAATGGTTAATTAAGGAGTCTCATGTGTCCTCCTTTACGCGCAACAAAATAATTTTAATGATTTATTTTGTTTGAAAAAGAATTATTGCCACGTGGCGTGCACCCAAGTTCTTTTTGTAACTTTTTATGCAAGAAATATTTCCCTCCCTATTCCACTAACAGAAGAAGCTCTGTGGAGCGAGGATGACGTGAGGAGCACCGGATAG

mRNA sequence

ATGAAGAGCCCGACGAGTCACGAGCTTTGGCACCCTCCCGCGGAGAGTTGGAAAATGAACTCAAATGCATCTTGGAGTGAGGAGCTTGGGGTGGGTGGTATCAGTTGGATTATCCATGATTTTTCAGGATCTTTGATTGGAGGAGGTTGTCTTCGGATTGGCAAGATTGTCATCCTGCCGCTTTTGGTGGAATCTAATTCTGTTGAGGCGATCGTGTCCCTTTACGAGATTGATAGTGACCTCTCGGATATTAAATTTGTTGCTTGTAGTGTTCCGAAGCTAGCGGAAGATTTTGGGAACATACATTTTGCTTTTGATATTTTTAAAGAAGCTCTGTGGAGCGAGGATGACGTGAGGAGCACCGGATAG

Coding sequence (CDS)

ATGAAGAGCCCGACGAGTCACGAGCTTTGGCACCCTCCCGCGGAGAGTTGGAAAATGAACTCAAATGCATCTTGGAGTGAGGAGCTTGGGGTGGGTGGTATCAGTTGGATTATCCATGATTTTTCAGGATCTTTGATTGGAGGAGGTTGTCTTCGGATTGGCAAGATTGTCATCCTGCCGCTTTTGGTGGAATCTAATTCTGTTGAGGCGATCGTGTCCCTTTACGAGATTGATAGTGACCTCTCGGATATTAAATTTGTTGCTTGTAGTGTTCCGAAGCTAGCGGAAGATTTTGGGAACATACATTTTGCTTTTGATATTTTTAAAGAAGCTCTGTGGAGCGAGGATGACGTGAGGAGCACCGGATAG

Protein sequence

MKSPTSHELWHPPAESWKMNSNASWSEELGVGGISWIIHDFSGSLIGGGCLRIGKIVILPLLVESNSVEAIVSLYEIDSDLSDIKFVACSVPKLAEDFGNIHFAFDIFKEALWSEDDVRSTG

Homology

[Close]

BLAST of Cla97C01G022090.1 vs. NCBI nr
Match: KGN66916.1 (hypothetical protein Csa_1G715220 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-04
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 2   KSPTSHELWH-PPAESWKMNSNASWSEELGVGGISWIIHDFSGSLIGGGCLRIGKIVILP 61
           +SP SH  W  P   +WK+  +ASW +  G GGI W++ D +GS +  GC +      LP
Sbjct: 23  ESPLSHLCWSLPVVRAWKLYFDASWVDSAGYGGIGWLVRDSAGSPVLVGCEKSVVEGDLP 82

Query: 62  LL--VESNSVEAIVSLYEIDSDLSDI 85
           LL  VE N  E I +    +SDLS++
Sbjct: 83  LLVIVEFNCSELIFACRGQNSDLSEL 108

[Close]

BLAST of Cla97C01G022090.1 vs. TrEMBL
Match: tr|A0A0A0M3X8|A0A0A0M3X8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G715220 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 2   KSPTSHELWH-PPAESWKMNSNASWSEELGVGGISWIIHDFSGSLIGGGCLRIGKIVILP 61
           +SP SH  W  P   +WK+  +ASW +  G GGI W++ D +GS +  GC +      LP
Sbjct: 23  ESPLSHLCWSLPVVRAWKLYFDASWVDSAGYGGIGWLVRDSAGSPVLVGCEKSVVEGDLP 82

Query: 62  LL--VESNSVEAIVSLYEIDSDLSDI 85
           LL  VE N  E I +    +SDLS++
Sbjct: 83  LLVIVEFNCSELIFACRGQNSDLSEL 108

The following BLAST results are available for this feature:

BLAST of Cla97C01G022090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66916.1	4.4e-04	39.53	hypothetical protein Csa_1G715220 [Cucumis sativus]	[more]

BLAST of Cla97C01G022090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M3X8\|A0A0A0M3X8_CUCSA	2.9e-04	39.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G715220 PE=4 SV=1	[more]

BLAST of Cla97C01G022090.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G022090.1 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G022090	Cla97C01G022090	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G022090.1	Cla97C01G022090.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G022090.1.exon.1	Cla97C01G022090.1.exon.1	exon
Cla97C01G022090.1.exon.2	Cla97C01G022090.1.exon.2	exon
Cla97C01G022090.1.exon.3	Cla97C01G022090.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G022090.1.CDS.1	Cla97C01G022090.1.CDS.1	CDS
Cla97C01G022090.1.CDS.2	Cla97C01G022090.1.CDS.2	CDS
Cla97C01G022090.1.CDS.3	Cla97C01G022090.1.CDS.3	CDS