Cla97C01G022090 (gene) Watermelon (97103) v2

Overview
NameCla97C01G022090
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionBnaC06g24790D protein
LocationCla97Chr01 : 33971498 .. 33972296 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGCCCGACGAGTCACGAGCTTTGGCACCCTCCCGCGGAGAGTTGGAAAATGAACTCAAATGCATCTTGGAGTGAGGAGCTTGGGGTGGGTGGTATCAGTTGGATTATCCATGATTTTTCAGGATCTTTGATTGGAGGAGGTTGTCTTCGGATTGGCAAGTATTGAAAGATTAAAGTGTTGAAAATGAAGGCTATCGAGGAAGGTTTAAAAGCTCTCCGTTCTCGGTTCAGGATTGTCATCCTGCCGCTTTTGGTGGAATCTAATTCTGTTGAGGCGATCGTGTCCCTTTACGAGATTGATAGTGACCTCTCGGATATTAAATTTGTTGCTTGTAGTGTTCCGAAGCTAGCGGAAGATTTTGGGAACATACATTTTGCTTTTGATATTTTTAGTTTTTTTAGTTCTTTTTGCTTTTGATATTTTTAGTTTTTTTTAGTTCTTTTTGCTTTTGATGGACTGAATTTTAATGTTTTATTTGTGTTTTTTTATTATTCGGTGTTAATGTCTATTAATTAATTTAAAATAATTATAAAATAAAAGTTTAAATTTAATTAAAATAGTTTAATCAACTATAATTCATTTAATTTAAATGGTTAATTAAGGAGTCTCATGTGTCCTCCTTTACGCGCAACAAAATAATTTTAATGATTTATTTTGTTTGAAAAAGAATTATTGCCACGTGGCGTGCACCCAAGTTCTTTTTGTAACTTTTTATGCAAGAAATATTTCCCTCCCTATTCCACTAACAGAAGAAGCTCTGTGGAGCGAGGATGACGTGAGGAGCACCGGATAG

mRNA sequence

ATGAAGAGCCCGACGAGTCACGAGCTTTGGCACCCTCCCGCGGAGAGTTGGAAAATGAACTCAAATGCATCTTGGAGTGAGGAGCTTGGGGTGGGTGGTATCAGTTGGATTATCCATGATTTTTCAGGATCTTTGATTGGAGGAGGTTGTCTTCGGATTGGCAAGATTGTCATCCTGCCGCTTTTGGTGGAATCTAATTCTGTTGAGGCGATCGTGTCCCTTTACGAGATTGATAGTGACCTCTCGGATATTAAATTTGTTGCTTGTAGTGTTCCGAAGCTAGCGGAAGATTTTGGGAACATACATTTTGCTTTTGATATTTTTAAAGAAGCTCTGTGGAGCGAGGATGACGTGAGGAGCACCGGATAG

Coding sequence (CDS)

ATGAAGAGCCCGACGAGTCACGAGCTTTGGCACCCTCCCGCGGAGAGTTGGAAAATGAACTCAAATGCATCTTGGAGTGAGGAGCTTGGGGTGGGTGGTATCAGTTGGATTATCCATGATTTTTCAGGATCTTTGATTGGAGGAGGTTGTCTTCGGATTGGCAAGATTGTCATCCTGCCGCTTTTGGTGGAATCTAATTCTGTTGAGGCGATCGTGTCCCTTTACGAGATTGATAGTGACCTCTCGGATATTAAATTTGTTGCTTGTAGTGTTCCGAAGCTAGCGGAAGATTTTGGGAACATACATTTTGCTTTTGATATTTTTAAAGAAGCTCTGTGGAGCGAGGATGACGTGAGGAGCACCGGATAG

Protein sequence

MKSPTSHELWHPPAESWKMNSNASWSEELGVGGISWIIHDFSGSLIGGGCLRIGKIVILPLLVESNSVEAIVSLYEIDSDLSDIKFVACSVPKLAEDFGNIHFAFDIFKEALWSEDDVRSTG
Homology
[Close]
BLAST of Cla97C01G022090 vs. NCBI nr
Match: KGN66916.1 (hypothetical protein Csa_1G715220 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-04
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0 

Query: 2   KSPTSHELWH-PPAESWKMNSNASWSEELGVGGISWIIHDFSGSLIGGGCLRIGKIVILP 61
           +SP SH  W  P   +WK+  +ASW +  G GGI W++ D +GS +  GC +      LP
Sbjct: 23  ESPLSHLCWSLPVVRAWKLYFDASWVDSAGYGGIGWLVRDSAGSPVLVGCEKSVVEGDLP 82

Query: 62  LL--VESNSVEAIVSLYEIDSDLSDI 85
           LL  VE N  E I +    +SDLS++
Sbjct: 83  LLVIVEFNCSELIFACRGQNSDLSEL 108

[Close]
BLAST of Cla97C01G022090 vs. TrEMBL
Match: tr|A0A0A0M3X8|A0A0A0M3X8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G715220 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0 

Query: 2   KSPTSHELWH-PPAESWKMNSNASWSEELGVGGISWIIHDFSGSLIGGGCLRIGKIVILP 61
           +SP SH  W  P   +WK+  +ASW +  G GGI W++ D +GS +  GC +      LP
Sbjct: 23  ESPLSHLCWSLPVVRAWKLYFDASWVDSAGYGGIGWLVRDSAGSPVLVGCEKSVVEGDLP 82

Query: 62  LL--VESNSVEAIVSLYEIDSDLSDI 85
           LL  VE N  E I +    +SDLS++
Sbjct: 83  LLVIVEFNCSELIFACRGQNSDLSEL 108

The following BLAST results are available for this feature:
BLAST of Cla97C01G022090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66916.14.4e-0439.53hypothetical protein Csa_1G715220 [Cucumis sativus][more]
BLAST of Cla97C01G022090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M3X8|A0A0A0M3X8_CUCSA2.9e-0439.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G715220 PE=4 SV=1[more]
BLAST of Cla97C01G022090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G022090 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G022090.1Cla97C01G022090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G022090Watermelon (97103) v2wmbwmbB013
Cla97C01G022090Silver-seed gourdcarwmbB0669
Cla97C01G022090Silver-seed gourdcarwmbB0912
Cla97C01G022090Silver-seed gourdcarwmbB0972
Cla97C01G022090Cucumber (Gy14) v2cgybwmbB002
Cla97C01G022090Cucumber (Gy14) v2cgybwmbB394
Cla97C01G022090Cucumber (Gy14) v1cgywmbB017
Cla97C01G022090Cucumber (Gy14) v1cgywmbB247
Cla97C01G022090Cucurbita maxima (Rimu)cmawmbB212
Cla97C01G022090Cucurbita maxima (Rimu)cmawmbB520
Cla97C01G022090Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G022090Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G022090Cucurbita moschata (Rifu)cmowmbB196
Cla97C01G022090Cucurbita moschata (Rifu)cmowmbB378
Cla97C01G022090Cucurbita moschata (Rifu)cmowmbB501
Cla97C01G022090Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G022090Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G022090Wild cucumber (PI 183967)cpiwmbB001
Cla97C01G022090Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G022090Wild cucumber (PI 183967)cpiwmbB539
Cla97C01G022090Cucumber (Chinese Long) v3cucwmbB001
Cla97C01G022090Cucumber (Chinese Long) v3cucwmbB430
Cla97C01G022090Cucumber (Chinese Long) v3cucwmbB534
Cla97C01G022090Cucumber (Chinese Long) v2cuwmbB000
Cla97C01G022090Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G022090Cucumber (Chinese Long) v2cuwmbB514
Cla97C01G022090Bottle gourd (USVL1VR-Ls)lsiwmbB073
Cla97C01G022090Bottle gourd (USVL1VR-Ls)lsiwmbB156
Cla97C01G022090Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G022090Bottle gourd (USVL1VR-Ls)lsiwmbB154
Cla97C01G022090Melon (DHL92) v3.6.1medwmbB130
Cla97C01G022090Melon (DHL92) v3.6.1medwmbB157
Cla97C01G022090Melon (DHL92) v3.6.1medwmbB507
Cla97C01G022090Melon (DHL92) v3.5.1mewmbB140
Cla97C01G022090Melon (DHL92) v3.5.1mewmbB172
Cla97C01G022090Melon (DHL92) v3.5.1mewmbB515
Cla97C01G022090Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G022090Watermelon (Charleston Gray)wcgwmbB172
Cla97C01G022090Watermelon (97103) v1wmwmbB111
Cla97C01G022090Watermelon (97103) v1wmwmbB234
Cla97C01G022090Watermelon (97103) v1wmwmbB307
Cla97C01G022090Wax gourdwgowmbB402
Cla97C01G022090Wax gourdwgowmbB406
Cla97C01G022090Wax gourdwgowmbB462