Cla97C01G017880.1 (mRNA) Watermelon (97103) v2

NameCla97C01G017880.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr01 : 31288892 .. 31289392 (+)
Sequence length501
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCTCGGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCTCCAGCGCCGGCACCGGGTTCTTCACAGCCTCTAACTCCGCCACCAGCCACTCCGGCGCCTTCTCCGGTGGCTCTCCCTCCATCTCCGACTCCGACGCCAAACAGAGCACCATCGCCTTCACCGGCTCCCGCGTCCCCCTCACCCGCTCCTGGAGCTCCGTCACCGGCCCCAGCAGCTCCTGCCCCTGCTCCGGCAACTACTGCTCCTACCCCAGCTCCAAGCTCCAGTCCTACTCCTTCGGGATCTCCCACCGGTGGTCCTGTAGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCTGCACCCCAAGCACCGGCGGCCGACAACCCAGCTGGAGCAGCGTCACACATCGGTGGAGCGGCGACATTCGGAATCGCTGTTGCTGGAACTCTGTTCGCAGTGATTTTAGCGTAG

mRNA sequence

ATGGGATTCTCGGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCTCCAGCGCCGGCACCGGGTTCTTCACAGCCTCTAACTCCGCCACCAGCCACTCCGGCGCCTTCTCCGGTGGCTCTCCCTCCATCTCCGACTCCGACGCCAAACAGAGCACCATCGCCTTCACCGGCTCCCGCGTCCCCCTCACCCGCTCCTGGAGCTCCGTCACCGGCCCCAGCAGCTCCTGCCCCTGCTCCGGCAACTACTGCTCCTACCCCAGCTCCAAGCTCCAGTCCTACTCCTTCGGGATCTCCCACCGGTGGTCCTGTAGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCTGCACCCCAAGCACCGGCGGCCGACAACCCAGCTGGAGCAGCGTCACACATCGGTGGAGCGGCGACATTCGGAATCGCTGTTGCTGGAACTCTGTTCGCAGTGATTTTAGCGTAG

Coding sequence (CDS)

ATGGGATTCTCGGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCTCCAGCGCCGGCACCGGGTTCTTCACAGCCTCTAACTCCGCCACCAGCCACTCCGGCGCCTTCTCCGGTGGCTCTCCCTCCATCTCCGACTCCGACGCCAAACAGAGCACCATCGCCTTCACCGGCTCCCGCGTCCCCCTCACCCGCTCCTGGAGCTCCGTCACCGGCCCCAGCAGCTCCTGCCCCTGCTCCGGCAACTACTGCTCCTACCCCAGCTCCAAGCTCCAGTCCTACTCCTTCGGGATCTCCCACCGGTGGTCCTGTAGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCTGCACCCCAAGCACCGGCGGCCGACAACCCAGCTGGAGCAGCGTCACACATCGGTGGAGCGGCGACATTCGGAATCGCTGTTGCTGGAACTCTGTTCGCAGTGATTTTAGCGTAG

Protein sequence

MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C01G017880Cla97C01G017880gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C01G017880.1.exon.1Cla97C01G017880.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C01G017880.1.CDS.1Cla97C01G017880.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C01G017880.1Cla97C01G017880.1-proteinpolypeptide


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 39..55
score: 47.06
coord: 17..38
score: 27.27
coord: 56..73
score: 30.0
coord: 76..101
score: 40.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..134