Cla97C01G008570.1 (mRNA) Watermelon (97103) v2
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCATAGGATTGGTGAAGCCACACGGTTGTTTATGAGAATGCAAAAGTTGGGTTGTAGGCCAGATGTGATTACTTATGGGACTTTAATCAAAGGTCTTTGTCAAACAGGTAATACTAACATTGCACTTAAGTTGCATGAAGAAATGCTCAATGGGACTGGTCGTTATGGCATTAATTGTAAGCCTAATGTTATTTGTTATGGTACCATTATTGATGGGCTCTGTAAAGATGGACAGGAAGATAAGGCAAGGGAACTTTTGGAAGAAATGAAGGCTCGGAGAATGCTTCCAAATGTGGTTTCTTATACCTCTTTGATTCATGGATTTTTCAGTAGTGGAAAGTGGGAGGAGGCTAAATGTCTGCTCAATGAGATGGTGGATCAAGGTGTTCAACCAAATGGAACTACATTTAATGTGTTGATGGATATGCTTTGCAAGGTAGGGCAAGTTATCAACGCTAAGGAGTTGCTAGAGATGATGGTTCAGAGTGGTATTGTTCCTAGTTTATTTCATTATAATACATTGTTGGATGGGTTCTGTTTGGTTGGTGATTTAAATAGTGCTAGGGAACTGTTTGATAGTATGTCAAGTAAGGGATGTGAACCTGATGTGATAAGCTACAATGCGCTAATCAATGGGTATTGCAAAAATGGAAAGGTGGAAGAAGCAATGAAGATTTACAATGAAATGCTTCAAATGGGTATTAAGCCATGTGTGATAACATATAATGTGTTGCTAATGGGTCATTTTCAGGCAAGGAAGGTTGATGATGCAAAGAAAATATTTGCTGTCATTCAAGCTCACGGTCTGGTGCCAAGTTCAAATACGTTTAGTATCTTTTTAGATGGGCTATGTAAGAATGATTGTTTGTTAGAAGCAATGGAAATTTTTAATGAGCTATCTTACAATTTGAAATTGAACATCGTTATCTTTAATTGTCTTATCGATGGCTTATGTAAAGCAGGAAAACTTGAAACTGCTTGGGAGCTTTTCAACAAATTGTCCCATGAAGGGCTTCTACCAAATGTTGTGACTTATAACATTATGATCCATGGCTATTGTAAAGAAGGACAACTAGAAAAGGCAAGGGATTTATTTCAAAAGATGGAAGAAAATGGTTGTACCCCTAGTGTAATTACCTACAATACGCTTCTACATGGTTTCTACGAAAGTAATAAACGAGAGGAAGTGGTTGAGCTTCTTCATAGGATGGTTCAGAAAAATGTGTTGCCAGATGCTTCCACCTACAACATAGTCGTAAACATGCTTTCTAAAGATGAAAAGTATCAGGAATTTCTGAACTTGCTTCCAACATTTCCTACTCAAGAGTGTCGGGGTTGA ATGGAGCATAGGATTGGTGAAGCCACACGGTTGTTTATGAGAATGCAAAAGTTGGGTTGTAGGCCAGATGTGATTACTTATGGGACTTTAATCAAAGGTCTTTGTCAAACAGGTAATACTAACATTGCACTTAAGTTGCATGAAGAAATGCTCAATGGGACTGGTCGTTATGGCATTAATTGTAAGCCTAATGTTATTTGTTATGGTACCATTATTGATGGGCTCTGTAAAGATGGACAGGAAGATAAGGCAAGGGAACTTTTGGAAGAAATGAAGGCTCGGAGAATGCTTCCAAATGTGGTTTCTTATACCTCTTTGATTCATGGATTTTTCAGTAGTGGAAAGTGGGAGGAGGCTAAATGTCTGCTCAATGAGATGGTGGATCAAGGTGTTCAACCAAATGGAACTACATTTAATGTGTTGATGGATATGCTTTGCAAGGTAGGGCAAGTTATCAACGCTAAGGAGTTGCTAGAGATGATGGTTCAGAGTGGTATTGTTCCTAGTTTATTTCATTATAATACATTGTTGGATGGGTTCTGTTTGGTTGGTGATTTAAATAGTGCTAGGGAACTGTTTGATAGTATGTCAAGTAAGGGATGTGAACCTGATGTGATAAGCTACAATGCGCTAATCAATGGGTATTGCAAAAATGGAAAGGTGGAAGAAGCAATGAAGATTTACAATGAAATGCTTCAAATGGGTATTAAGCCATGTGTGATAACATATAATGTGTTGCTAATGGGTCATTTTCAGGCAAGGAAGGTTGATGATGCAAAGAAAATATTTGCTGTCATTCAAGCTCACGGTCTGGTGCCAAGTTCAAATACGTTTAGTATCTTTTTAGATGGGCTATGTAAGAATGATTGTTTGTTAGAAGCAATGGAAATTTTTAATGAGCTATCTTACAATTTGAAATTGAACATCGTTATCTTTAATTGTCTTATCGATGGCTTATGTAAAGCAGGAAAACTTGAAACTGCTTGGGAGCTTTTCAACAAATTGTCCCATGAAGGGCTTCTACCAAATGTTGTGACTTATAACATTATGATCCATGGCTATTGTAAAGAAGGACAACTAGAAAAGGCAAGGGATTTATTTCAAAAGATGGAAGAAAATGGTTGTACCCCTAGTGTAATTACCTACAATACGCTTCTACATGGTTTCTACGAAAGTAATAAACGAGAGGAAGTGGTTGAGCTTCTTCATAGGATGGTTCAGAAAAATGTGTTGCCAGATGCTTCCACCTACAACATAGTCGTAAACATGCTTTCTAAAGATGAAAAGTATCAGGAATTTCTGAACTTGCTTCCAACATTTCCTACTCAAGAGTGTCGGGGTTGA ATGGAGCATAGGATTGGTGAAGCCACACGGTTGTTTATGAGAATGCAAAAGTTGGGTTGTAGGCCAGATGTGATTACTTATGGGACTTTAATCAAAGGTCTTTGTCAAACAGGTAATACTAACATTGCACTTAAGTTGCATGAAGAAATGCTCAATGGGACTGGTCGTTATGGCATTAATTGTAAGCCTAATGTTATTTGTTATGGTACCATTATTGATGGGCTCTGTAAAGATGGACAGGAAGATAAGGCAAGGGAACTTTTGGAAGAAATGAAGGCTCGGAGAATGCTTCCAAATGTGGTTTCTTATACCTCTTTGATTCATGGATTTTTCAGTAGTGGAAAGTGGGAGGAGGCTAAATGTCTGCTCAATGAGATGGTGGATCAAGGTGTTCAACCAAATGGAACTACATTTAATGTGTTGATGGATATGCTTTGCAAGGTAGGGCAAGTTATCAACGCTAAGGAGTTGCTAGAGATGATGGTTCAGAGTGGTATTGTTCCTAGTTTATTTCATTATAATACATTGTTGGATGGGTTCTGTTTGGTTGGTGATTTAAATAGTGCTAGGGAACTGTTTGATAGTATGTCAAGTAAGGGATGTGAACCTGATGTGATAAGCTACAATGCGCTAATCAATGGGTATTGCAAAAATGGAAAGGTGGAAGAAGCAATGAAGATTTACAATGAAATGCTTCAAATGGGTATTAAGCCATGTGTGATAACATATAATGTGTTGCTAATGGGTCATTTTCAGGCAAGGAAGGTTGATGATGCAAAGAAAATATTTGCTGTCATTCAAGCTCACGGTCTGGTGCCAAGTTCAAATACGTTTAGTATCTTTTTAGATGGGCTATGTAAGAATGATTGTTTGTTAGAAGCAATGGAAATTTTTAATGAGCTATCTTACAATTTGAAATTGAACATCGTTATCTTTAATTGTCTTATCGATGGCTTATGTAAAGCAGGAAAACTTGAAACTGCTTGGGAGCTTTTCAACAAATTGTCCCATGAAGGGCTTCTACCAAATGTTGTGACTTATAACATTATGATCCATGGCTATTGTAAAGAAGGACAACTAGAAAAGGCAAGGGATTTATTTCAAAAGATGGAAGAAAATGGTTGTACCCCTAGTGTAATTACCTACAATACGCTTCTACATGGTTTCTACGAAAGTAATAAACGAGAGGAAGTGGTTGAGCTTCTTCATAGGATGGTTCAGAAAAATGTGTTGCCAGATGCTTCCACCTACAACATAGTCGTAAACATGCTTTCTAAAGATGAAAAGTATCAGGAATTTCTGAACTTGCTTCCAACATTTCCTACTCAAGAGTGTCGGGGTTGA MEHRIGEATRLFMRMQKLGCRPDVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGINCKPNVICYGTIIDGLCKDGQEDKARELLEEMKARRMLPNVVSYTSLIHGFFSSGKWEEAKCLLNEMVDQGVQPNGTTFNVLMDMLCKVGQVINAKELLEMMVQSGIVPSLFHYNTLLDGFCLVGDLNSARELFDSMSSKGCEPDVISYNALINGYCKNGKVEEAMKIYNEMLQMGIKPCVITYNVLLMGHFQARKVDDAKKIFAVIQAHGLVPSSNTFSIFLDGLCKNDCLLEAMEIFNELSYNLKLNIVIFNCLIDGLCKAGKLETAWELFNKLSHEGLLPNVVTYNIMIHGYCKEGQLEKARDLFQKMEENGCTPSVITYNTLLHGFYESNKREEVVELLHRMVQKNVLPDASTYNIVVNMLSKDEKYQEFLNLLPTFPTQECRG
BLAST of Cla97C01G008570.1 vs. NCBI nr
Match: KDO40555.1 (hypothetical protein CISIN_1g035749mg, partial [Citrus sinensis]) HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08 Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. NCBI nr
Match: XP_006423456.2 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Citrus clementina]) HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08 Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. NCBI nr
Match: XP_024957613.1 (pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like isoform X2 [Citrus sinensis]) HSP 1 Score: 70.1 bits (170), Expect = 2.2e-08 Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. NCBI nr
Match: KDO38966.1 (hypothetical protein CISIN_1g036461mg, partial [Citrus sinensis]) HSP 1 Score: 69.7 bits (169), Expect = 2.8e-08 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. NCBI nr
Match: GAY31874.1 (hypothetical protein CUMW_285160, partial [Citrus unshiu]) HSP 1 Score: 69.7 bits (169), Expect = 2.8e-08 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. TrEMBL
Match: tr|A0A067DG78|A0A067DG78_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g035749mg PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08 Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. TrEMBL
Match: tr|A0A2H5MV11|A0A2H5MV11_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_285160 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. TrEMBL
Match: tr|A0A067DK23|A0A067DK23_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g036461mg PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. TrEMBL
Match: tr|A0A2H5MVP4|A0A2H5MVP4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_272610 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 5.5e-08 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. TrEMBL
Match: tr|V4SJV8|V4SJV8_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10026992mg PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0
BLAST of Cla97C01G008570.1 vs. TAIR10
Match: AT5G57250.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 45.1 bits (105), Expect = 1.4e-04 Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
|