Cla97C01G001180.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G001180.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr01 : 898208 .. 898540 (+)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAAGTCGAGAGGATCCCATCAATGACTGACAACTCAGTGGATAGTGATGGCTCAAAAGATGCTCAAGGTCACCATGATCTCCATGACGAGGATGTTTCACGTCCCCGTTCTGAGCATAAACAAGGTTCACATGCTGAGCACGAGCACAATGATGATTTTGATCCCCATGATGATCATAATGCTGGCAACGATTTCGAACATGTCATGAGGGATCACGCCGACGAGGACCATTTACCAGAGCCTGAAACGATCTCGAAGAGGGGCAAAAGGAAGAGAAAAGCACATGAGGAGCACGAACACGACGGGTTTGCCTACTGCAGAGCTTAG

mRNA sequence

ATGGACCAAGTCGAGAGGATCCCATCAATGACTGACAACTCAGTGGATAGTGATGGCTCAAAAGATGCTCAAGGTCACCATGATCTCCATGACGAGGATGTTTCACGTCCCCGTTCTGAGCATAAACAAGGTTCACATGCTGAGCACGAGCACAATGATGATTTTGATCCCCATGATGATCATAATGCTGGCAACGATTTCGAACATGTCATGAGGGATCACGCCGACGAGGACCATTTACCAGAGCCTGAAACGATCTCGAAGAGGGGCAAAAGGAAGAGAAAAGCACATGAGGAGCACGAACACGACGGGTTTGCCTACTGCAGAGCTTAG

Coding sequence (CDS)

ATGGACCAAGTCGAGAGGATCCCATCAATGACTGACAACTCAGTGGATAGTGATGGCTCAAAAGATGCTCAAGGTCACCATGATCTCCATGACGAGGATGTTTCACGTCCCCGTTCTGAGCATAAACAAGGTTCACATGCTGAGCACGAGCACAATGATGATTTTGATCCCCATGATGATCATAATGCTGGCAACGATTTCGAACATGTCATGAGGGATCACGCCGACGAGGACCATTTACCAGAGCCTGAAACGATCTCGAAGAGGGGCAAAAGGAAGAGAAAAGCACATGAGGAGCACGAACACGACGGGTTTGCCTACTGCAGAGCTTAG

Protein sequence

MDQVERIPSMTDNSVDSDGSKDAQGHHDLHDEDVSRPRSEHKQGSHAEHEHNDDFDPHDDHNAGNDFEHVMRDHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA

Homology

[Close]

BLAST of Cla97C01G001180.1 vs. NCBI nr
Match: KGN49944.1 (hypothetical protein Csa_5G141180 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 57/113 (50.44%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MDQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXX 60
           +DQ +R PS+ D S DSDG KDAQGH   HDLH+ED+S             XXXXXXXXX
Sbjct: 318 VDQAKRAPSVIDVSEDSDGPKDAQGHFDDHDLHNEDISNXXXXXXXXXXXXXXXXXXXXX 377

Query: 61  XXXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
           XX           MR H  ED LPEPE   KR KR+ KAH+EH H+ F+Y ++
Sbjct: 378 XXDHDIDNNSERFMRDHV-EDRLPEPEMSMKRCKREGKAHKEHNHNVFSYLKS 429

[Close]

BLAST of Cla97C01G001180.1 vs. NCBI nr
Match: XP_011654656.1 (PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 57/113 (50.44%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MDQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXX 60
           +DQ +R PS+ D S DSDG KDAQGH   HDLH+ED+S             XXXXXXXXX
Sbjct: 401 VDQAKRAPSVIDVSEDSDGPKDAQGHFDDHDLHNEDISNXXXXXXXXXXXXXXXXXXXXX 460

Query: 61  XXXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
           XX           MR H  ED LPEPE   KR KR+ KAH+EH H+ F+Y ++
Sbjct: 461 XXDHDIDNNSERFMRDHV-EDRLPEPEMSMKRCKREGKAHKEHNHNVFSYLKS 512

[Close]

BLAST of Cla97C01G001180.1 vs. NCBI nr
Match: XP_011654657.1 (PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 57/113 (50.44%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MDQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXX 60
           +DQ +R PS+ D S DSDG KDAQGH   HDLH+ED+S             XXXXXXXXX
Sbjct: 399 VDQAKRAPSVIDVSEDSDGPKDAQGHFDDHDLHNEDISNXXXXXXXXXXXXXXXXXXXXX 458

Query: 61  XXXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
           XX           MR H  ED LPEPE   KR KR+ KAH+EH H+ F+Y ++
Sbjct: 459 XXDHDIDNNSERFMRDHV-EDRLPEPEMSMKRCKREGKAHKEHNHNVFSYLKS 510

[Close]

BLAST of Cla97C01G001180.1 vs. NCBI nr
Match: XP_008437500.1 (PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 2   DQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXXX 61
           DQ ER PS+ D S +SDG KDAQG    HDLH+ED+S P           XXXX      
Sbjct: 403 DQAERAPSVIDISEESDGPKDAQGQFDDHDLHNEDISNPXXXXXXXXXXXXXXXDNCDPH 462

Query: 62  XXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
                       MR H  EDHLPEPE   KR KR+ K+ EEH+H+ F++ ++
Sbjct: 463 DNHDIDNNSVRFMRDHV-EDHLPEPEMSMKRCKREGKSREEHKHNVFSHLKS 513

[Close]

BLAST of Cla97C01G001180.1 vs. NCBI nr
Match: XP_008437501.1 (PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 2   DQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXXX 61
           DQ ER PS+ D S +SDG KDAQG    HDLH+ED+S P           XXXX      
Sbjct: 401 DQAERAPSVIDISEESDGPKDAQGQFDDHDLHNEDISNPXXXXXXXXXXXXXXXDNCDPH 460

Query: 62  XXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
                       MR H  EDHLPEPE   KR KR+ K+ EEH+H+ F++ ++
Sbjct: 461 DNHDIDNNSVRFMRDHV-EDHLPEPEMSMKRCKREGKSREEHKHNVFSHLKS 511

[Close]

BLAST of Cla97C01G001180.1 vs. TrEMBL
Match: tr|A0A0A0KM59|A0A0A0KM59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141180 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 57/113 (50.44%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MDQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXX 60
           +DQ +R PS+ D S DSDG KDAQGH   HDLH+ED+S             XXXXXXXXX
Sbjct: 318 VDQAKRAPSVIDVSEDSDGPKDAQGHFDDHDLHNEDISNXXXXXXXXXXXXXXXXXXXXX 377

Query: 61  XXXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
           XX           MR H  ED LPEPE   KR KR+ KAH+EH H+ F+Y ++
Sbjct: 378 XXDHDIDNNSERFMRDHV-EDRLPEPEMSMKRCKREGKAHKEHNHNVFSYLKS 429

[Close]

BLAST of Cla97C01G001180.1 vs. TrEMBL
Match: tr|A0A1S3ATU8|A0A1S3ATU8_CUCME (uncharacterized protein LOC103482899 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482899 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 2   DQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXXX 61
           DQ ER PS+ D S +SDG KDAQG    HDLH+ED+S P           XXXX      
Sbjct: 403 DQAERAPSVIDISEESDGPKDAQGQFDDHDLHNEDISNPXXXXXXXXXXXXXXXDNCDPH 462

Query: 62  XXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
                       MR H  EDHLPEPE   KR KR+ K+ EEH+H+ F++ ++
Sbjct: 463 DNHDIDNNSVRFMRDHV-EDHLPEPEMSMKRCKREGKSREEHKHNVFSHLKS 513

[Close]

BLAST of Cla97C01G001180.1 vs. TrEMBL
Match: tr|A0A1S3AUB0|A0A1S3AUB0_CUCME (uncharacterized protein LOC103482899 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482899 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 2   DQVERIPSMTDNSVDSDGSKDAQGH---HDLHDEDVSRPRSEHKQGSHAEXXXXXXXXXX 61
           DQ ER PS+ D S +SDG KDAQG    HDLH+ED+S P           XXXX      
Sbjct: 401 DQAERAPSVIDISEESDGPKDAQGQFDDHDLHNEDISNPXXXXXXXXXXXXXXXDNCDPH 460

Query: 62  XXXXXXXXXXXXMRXHADEDHLPEPETISKRGKRKRKAHEEHEHDGFAYCRA 111
                       MR H  EDHLPEPE   KR KR+ K+ EEH+H+ F++ ++
Sbjct: 461 DNHDIDNNSVRFMRDHV-EDHLPEPEMSMKRCKREGKSREEHKHNVFSHLKS 511

The following BLAST results are available for this feature:

BLAST of Cla97C01G001180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49944.1	7.0e-09	50.44	hypothetical protein Csa_5G141180 [Cucumis sativus]	[more]
XP_011654656.1	7.0e-09	50.44	PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus]	[more]
XP_011654657.1	7.0e-09	50.44	PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus]	[more]
XP_008437500.1	2.0e-08	43.75	PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo]	[more]
XP_008437501.1	2.0e-08	43.75	PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo]	[more]

BLAST of Cla97C01G001180.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KM59\|A0A0A0KM59_CUCSA	4.6e-09	50.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141180 PE=4 SV=1	[more]
tr\|A0A1S3ATU8\|A0A1S3ATU8_CUCME	1.3e-08	43.75	uncharacterized protein LOC103482899 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3AUB0\|A0A1S3AUB0_CUCME	1.3e-08	43.75	uncharacterized protein LOC103482899 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cla97C01G001180.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G001180.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G001180	Cla97C01G001180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G001180.1.exon.1	Cla97C01G001180.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G001180.1.CDS.1	Cla97C01G001180.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G001180.1	Cla97C01G001180.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..89