Cla022307.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022307
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 22480596 .. 22483608 (-)
Sequence length	1038

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCAACAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAATAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGGTAACTTATAAATTATTTCCCATGGTTCTATTTTCTTGTCATTTCTACTTTTCTCTAAGCTGCCAAGTGGATTACAATGTTTATTCAGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTTGGTGCCATTTGTTTTTCATTTCGTTTTTTTCTTTTCCTCCCATTTTGCTTATATTTCATTATTGTAAATTTTGACTTATTTATTCGCAGGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTTTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAACGTGGGTGGTACGGTTAAATTTATTTTTATCATTTAATTACTCTAAAATGGCTGTTCATTATCGATTTTTCCACAGGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGTTTGGAACCCATTTTTTGTGTTTGTCTTTAATAACCCTAGATTTTAAAAATATCTAATAAGTCTCTCAATTTTACAAATGTCAAATAGATCCTTGAACTTTTTAAATTTGTATATGATATATAGATCTTTAGAATGTTCTAACATTTTTGTAAATTAATGAATTTATTATAAAATTGAATTTTGTGTCTAATATAAAATTAGTTTTTCATTTTGTGTCTATTAGATTTAAAAAAAATATCAATTAGGTTAATAACCTATTGGACACAAAATTTGAAACTCATAAATGAATTAGACACAAAATCCAAAGTCTTGAGATTTATTAGAAATTCTTTAGTTCATAACCGTTTGATACTTTTCAAAGTTTAGACACAATATGAAAGTTTAAGAACTAAACTTATAATTTACCTTTATAATACCTCTTTTGAGGCATTCTAATAATGATCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGGTATGGTGTTCTTGAATTCTTTCATTCTCCATTTCCATAGACACAATTTGCACTGTGATAAAAAGCTTTTATAGAATATGATTTAGGGAACTGCACTTGAAGTGCTGAGTTAATTTGGTAACTATTGGCTGGTCTTAGTTTCTCATGCGTATAATCTTTGAAAAAGAACATTATTTGACTCCAGAGGTAGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTAATGACCATAATGCGACAGCATTAAGGTAAGATGTTTTACATTCTGAGTTTTATGGTCAACAACACTTCACTCCGCAAACACCATCATTTCAGTACTTCGAGTAAGGCTTTTTTTGGCTAAATTATAAAAAATACTCCTAATCTTTTCTTTAATATAAAAAATACCTCTATCCTTTTAAAAATAGTAAATTATTTGGTCAACGTTTTCAAAACTATGTAGCAAAAATCTTTTAAAATGTAGGATAAAAAAAAAAAGTGCCAGTAACAATGACTAATAATGCCATTCAGACATCTCAATCTTTTGTCCAATATTCAAACGATTTTTCTACACCAAGTGACAATTTTGAAGCCTTTCACCTTTATGAAAGGTCAGTGATAGTGATAGTTTTGTAAGTTTGGAAGAAATATAGATATTTTTTAAATAGATATTACTTTAGTCTTATATTTTTTGTTTTGGTTTATTTTGATCCCTCTAATTTTAAAATGTTCCAAAGTTAAAATAATAGTGACCAAAGTGAACATGGGACATTTAGCTGCTCTATTATTATGGTGACTATTCTAAAAGGTATTTTCTATATAAATTGTTACTAATTCCTTTTCCCTTAACTTAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATGCCTCCCCCTCCCCCACCCCTCACCCCACGCAACAAATAA

mRNA sequence

ATGTCGCAACAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAATAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATGCCTCCCCCTCCCCCACCCCTCACCCCACGCAACAAATAA

Coding sequence (CDS)

ATGTCGCAACAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAATAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATGCCTCCCCCTCCCCCACCCCTCACCCCACGCAACAAATAA

Protein sequence

MSQQPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKATSYDPEFSVLNLDAASNNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEITCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRKRHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDIFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSSILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYGNENEVGMNNSLGRLKSHRYILKSMPPPPPPLTPRNK

Homology

[Close]

BLAST of Cla022307 vs. TrEMBL
Match: A0A067FE47_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002213mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 57/196 (29.08%), Postives = 93/196 (47.45%), Query Frame = 1


Query: 14  GMSQRYLQFKEASANAPL-NSFPSNFTSNVKAT--------SYDPEFSVLNLDAASNNRV 73
           GMS+R LQF+EA     + +S PSN  ++V ++        S  P+ S ++L+  S  R 
Sbjct: 317 GMSRRCLQFEEAQLKVTVCSSNPSNKLNDVTSSQLPTTPVESESPDPSHVDLNITSGKRQ 376

Query: 74  SANSSRSCT-LLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHI 133
            A+     T + PP      PL +SKPSGIGLH+NN+I +  + HG   G+ +      +
Sbjct: 377 LASLPHPVTPVFPPHHTGKSPLTVSKPSGIGLHLNNLIKSSPEGHGAPVGVNLSSTEAGM 436

Query: 134 LRNEITCSENASLTSSITLKS--CHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRK 193
           L ++ + + ++ ++ S             +   +P   R F S    N E+I+   PK+K
Sbjct: 437 LESKASIAASSLISESFDDMGPLNWPPPVDPNGTPLTMRKFNSEHADNFEEISQLSPKKK 496

Query: 194 RHEKDSPKSRFMSGRC 198
           R +  S        RC
Sbjct: 497 RKKSSSTVDSDGCKRC 512

[Close]

BLAST of Cla022307 vs. TrEMBL
Match: A0A067FE47_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002213mg PE=4 SV=1)

HSP 1 Score: 37.4 bits (85), Expect = 4.3e+01
Identity = 20/58 (34.48%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 183 HEKDSPKSRFMSGRCLPSPDFD----------STSSSSPDYSDIFVETKTDILDVNSF 231
           H KD+ KSR +SGR +PSP  D          S + +S D +++ +E   +I+DV+ +
Sbjct: 689 HGKDASKSRILSGRYVPSPKSDLTILSSYVKSSRTLNSSDSNEMLLEKSREIVDVDPY 746

HSP 2 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 57/196 (29.08%), Postives = 93/196 (47.45%), Query Frame = 1


Query: 14  GMSQRYLQFKEASANAPL-NSFPSNFTSNVKAT--------SYDPEFSVLNLDAASNNRV 73
           GMS+R LQF+EA     + +S PSN  ++V ++        S  P+ S ++L+  S  R 
Sbjct: 317 GMSRRCLQFEEAQLKVTVCSSNPSNKLNDVTSSQLPTTPVESESPDPSHVDLNITSGKRQ 376

Query: 74  SANSSRSCT-LLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHI 133
            A+     T + PP      PL +SKPSGIGLH+NN+I +  + HG   G+ +      +
Sbjct: 377 LASLPHPVTPVFPPHHTGKSPLTVSKPSGIGLHLNNLIKSSPEGHGAPVGVNLSSTEAGM 436

Query: 134 LRNEITCSENASLTSSITLKS--CHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRK 193
           L ++ + + ++ ++ S             +   +P   R F S    N E+I+   PK+K
Sbjct: 437 LESKASIAASSLISESFDDMGPLNWPPPVDPNGTPLTMRKFNSEHADNFEEISQLSPKKK 496

Query: 194 RHEKDSPKSRFMSGRC 198
           R +  S        RC
Sbjct: 497 RKKSSSTVDSDGCKRC 512

[Close]

BLAST of Cla022307 vs. TrEMBL
Match: V4UMX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007369mg PE=4 SV=1)

HSP 1 Score: 37.4 bits (85), Expect = 4.3e+01
Identity = 20/58 (34.48%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 183 HEKDSPKSRFMSGRCLPSPDFD----------STSSSSPDYSDIFVETKTDILDVNSF 231
           H KD+ KSR +SGR +PSP  D          S + +S D +++ +E   +I+DV+ +
Sbjct: 689 HGKDASKSRILSGRYVPSPKSDLTILSSYVKSSRTLNSSDSNEMLLEKSREIVDVDPY 746

HSP 2 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 66/210 (31.43%), Postives = 97/210 (46.19%), Query Frame = 1


Query: 10  QPLHGMSQRYLQFKEASANAPLN----SFPSNFTSNVK--ATSYD---PEFSVLNLDAAS 69
           Q   GM +R LQF EA  N   N    S+P++  +N +  AT  D   PE S ++L   S
Sbjct: 345 QHQRGMLRRCLQFGEAQLNIITNNPSFSYPTSIAANSRLLATPSDSELPESSCVDLTTTS 404

Query: 70  NNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVS 129
           +N+  A S     +LPP +  N  L  SKPSGIGLH+N+I++ V         L ++   
Sbjct: 405 SNKQLAYSQPVTAMLPPQNSGNSSLAGSKPSGIGLHLNSIVNAVPMGFSSTTSLKVEEKD 464

Query: 130 Y------------HILRN----EITCSEN-ASLT-SSITLKSCHAVK----------AEQ 183
           Y            +++ N    E   +EN AS+  SS T +S H ++           E 
Sbjct: 465 YSSAWRISDSIPSNVIENSAGTEDRRNENKASIAMSSATSQSSHGLEPSKDPLLLKPIEL 524

[Close]

BLAST of Cla022307 vs. TrEMBL
Match: B9HA26_POPTR (Cysteine-rich polycomb-like family protein OS=Populus trichocarpa GN=POPTR_0006s26740g PE=4 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 56/188 (29.79%), Postives = 90/188 (47.87%), Query Frame = 1


Query: 8   VPQPLHGMSQRYLQFKEA----------SANAPLNSF----PSNFTSNVKATSYDPEFSV 67
           V Q   GMS+R LQF++A          S N  +N F    P++ T      S   E ++
Sbjct: 270 VSQLQRGMSRRCLQFEQAQQETTKDGTYSPNPAINLFGSISPASSTELEILDSSQVELTI 329

Query: 68  LN-LDAASNNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIA 127
            +  +   +   SAN S  C           P+ +SKPSGIGLH+N+I++T+        
Sbjct: 330 SSHKEQTMSAMFSANISGKC-----------PVAVSKPSGIGLHLNSIVNTLP------M 389

Query: 128 GLGMQG--VSYHILRNEITCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNL 179
           G G  G  +S+H++ N+I+CS+ ++L   ++L +   V   Q ++   T +  S    N+
Sbjct: 390 GSGASGPIMSHHLVENKISCSKLSNLVERVSLTAGDGVL--QTKASLATSSTTSESFHNM 438

[Close]

BLAST of Cla022307 vs. TrEMBL
Match: W9S4Z9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005620 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 70/233 (30.04%), Postives = 107/233 (45.92%), Query Frame = 1


Query: 163 ESNQPSNLEKINNFHPKRKRHEKDSPKSRFMSGRCLPSPDFDSTSSS----SP----DYS 222
           ES  P NL  +     +   H KD+PKSRF+S R LPSPD    SS+    SP    + S
Sbjct: 399 ESINPHNLTPLTPSF-QYSDHGKDAPKSRFISRRYLPSPDSAILSSNEKTKSPPRDLEKS 458

Query: 223 DIFVETKTDILDVNSFKWQ---QMNCDNGGTSSTSFIPSK-------------------L 282
           D+ +E   ++ D  S++WQ    +   +  +S    +PS                     
Sbjct: 459 DVLLEVSEELPDEGSYEWQVDYNVGIADSSSSRNDSVPSVPHLTQHPDTSVPMASATSFR 518

Query: 283 RGCTNISR----IGELRIGSSSILCRRSPDTPL------------IQAGNMTSINCING- 342
           R   N+S+     G  R+ S+S+    SP  P+            + +G++  ++ +   
Sbjct: 519 RDYRNLSQNQLCPGSARLLSNSMRRHGSPLAPMTRLCEATKSRQGLDSGSVQLVDILEDE 578

[Close]

BLAST of Cla022307 vs. NCBI nr
Match: gi|568859603|ref|XP_006483327.1| (PREDICTED: CRC domain-containing protein TSO1 isoform X2 [Citrus sinensis])

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-12
Identity = 60/212 (28.30%), Postives = 100/212 (47.17%), Query Frame = 1


Query: 14  GMSQRYLQFKEASANAPL-NSFPSNFTSNVKAT--------SYDPEFSVLNLDAASNNRV 73
           GMS+R LQF+EA     + +S PSN  ++V ++        S  P+ S ++L+  S  R 
Sbjct: 317 GMSRRCLQFEEAQLKVTVCSSNPSNKLNDVTSSQLPTTPVESESPDPSHVDLNITSGKRQ 376

Query: 74  SANSSRSCT-LLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHI 133
            A+     T + PP      PL +SKPSGIGLH+NN+I +  + HG   G+ +      +
Sbjct: 377 LASLPHPVTPVFPPHHTGKSPLTVSKPSGIGLHLNNLIKSSPEGHGAPVGVNLSSTEAGM 436

Query: 134 LRNEITCSENASLTSSITLKS--CHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRK 193
           L ++ + + ++ ++ S             +   +P   R F S    N E+I+   PK+K
Sbjct: 437 LESKASIAASSLISESFDDMGPLNWPPPVDPNGTPLTMRKFNSEHADNFEEISQLSPKKK 496

Query: 194 RHEKDS-------PKSRFMSGRCLPSPDFDST 207
           R +  S        +      RCL  P+++ T
Sbjct: 497 RKKSSSTVDSDGCKRCNCKKTRCLKLPEYEDT 528

[Close]

BLAST of Cla022307 vs. NCBI nr
Match: gi|568859603|ref|XP_006483327.1| (PREDICTED: CRC domain-containing protein TSO1 isoform X2 [Citrus sinensis])

HSP 1 Score: 37.4 bits (85), Expect = 6.2e+01
Identity = 20/58 (34.48%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 183 HEKDSPKSRFMSGRCLPSPDFD----------STSSSSPDYSDIFVETKTDILDVNSF 231
           H KD+ KSR +SGR +PSP  D          S + +S D +++ +E   +I+DV+ +
Sbjct: 666 HGKDASKSRILSGRYVPSPKSDLTILSSYVKSSRTLNSSDSNEMLLEKSREIVDVDPY 723

HSP 2 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 57/196 (29.08%), Postives = 93/196 (47.45%), Query Frame = 1


Query: 14  GMSQRYLQFKEASANAPL-NSFPSNFTSNVKAT--------SYDPEFSVLNLDAASNNRV 73
           GMS+R LQF+EA     + +S PSN  ++V ++        S  P+ S ++L+  S  R 
Sbjct: 317 GMSRRCLQFEEAQLKVTVCSSNPSNKLNDVTSSQLPTTPVESESPDPSHVDLNITSGKRQ 376

Query: 74  SANSSRSCT-LLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHI 133
            A+     T + PP      PL +SKPSGIGLH+NN+I +  + HG   G+ +      +
Sbjct: 377 LASLPHPVTPVFPPHHTGKSPLTVSKPSGIGLHLNNLIKSSPEGHGAPVGVNLSSTEAGM 436

Query: 134 LRNEITCSENASLTSSITLKS--CHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRK 193
           L ++ + + ++ ++ S             +   +P   R F S    N E+I+   PK+K
Sbjct: 437 LESKASIAASSLISESFDDMGPLNWPPPVDPNGTPLTMRKFNSEHADNFEEISQLSPKKK 496

Query: 194 RHEKDSPKSRFMSGRC 198
           R +  S        RC
Sbjct: 497 RKKSSSTVDSDGCKRC 512

[Close]

BLAST of Cla022307 vs. NCBI nr
Match: gi|568859601|ref|XP_006483326.1| (PREDICTED: CRC domain-containing protein TSO1 isoform X1 [Citrus sinensis])

HSP 1 Score: 37.4 bits (85), Expect = 6.2e+01
Identity = 20/58 (34.48%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 183 HEKDSPKSRFMSGRCLPSPDFD----------STSSSSPDYSDIFVETKTDILDVNSF 231
           H KD+ KSR +SGR +PSP  D          S + +S D +++ +E   +I+DV+ +
Sbjct: 689 HGKDASKSRILSGRYVPSPKSDLTILSSYVKSSRTLNSSDSNEMLLEKSREIVDVDPY 746

HSP 2 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 57/196 (29.08%), Postives = 93/196 (47.45%), Query Frame = 1


Query: 14  GMSQRYLQFKEASANAPL-NSFPSNFTSNVKAT--------SYDPEFSVLNLDAASNNRV 73
           GMS+R LQF+EA     + +S PSN  ++V ++        S  P+ S ++L+  S  R 
Sbjct: 317 GMSRRCLQFEEAQLKVTVCSSNPSNKLNDVTSSQLPTTPVESESPDPSHVDLNITSGKRQ 376

Query: 74  SANSSRSCT-LLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHI 133
            A+     T + PP      PL +SKPSGIGLH+NN+I +  + HG   G+ +      +
Sbjct: 377 LASLPHPVTPVFPPHHTGKSPLTVSKPSGIGLHLNNLIKSSPEGHGAPVGVNLSSTEAGM 436

Query: 134 LRNEITCSENASLTSSITLKS--CHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRK 193
           L ++ + + ++ ++ S             +   +P   R F S    N E+I+   PK+K
Sbjct: 437 LESKASIAASSLISESFDDMGPLNWPPPVDPNGTPLTMRKFNSEHADNFEEISQLSPKKK 496

Query: 194 RHEKDSPKSRFMSGRC 198
           R +  S        RC
Sbjct: 497 RKKSSSTVDSDGCKRC 512

[Close]

BLAST of Cla022307 vs. NCBI nr
Match: gi|567916950|ref|XP_006450481.1| (hypothetical protein CICLE_v10007369mg [Citrus clementina])

HSP 1 Score: 37.4 bits (85), Expect = 6.2e+01
Identity = 20/58 (34.48%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 183 HEKDSPKSRFMSGRCLPSPDFD----------STSSSSPDYSDIFVETKTDILDVNSF 231
           H KD+ KSR +SGR +PSP  D          S + +S D +++ +E   +I+DV+ +
Sbjct: 689 HGKDASKSRILSGRYVPSPKSDLTILSSYVKSSRTLNSSDSNEMLLEKSREIVDVDPY 746

HSP 2 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 58/206 (28.16%), Postives = 92/206 (44.66%), Query Frame = 1


Query: 5   PLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKATSYDPEFSVLNLDAASNNRV 64
           P  V     GM +R LQF+EA    P  +   + +S  K  + +P  S   L+    +  
Sbjct: 275 PNKVKNDQGGMHRRCLQFEEAP---PCATGKRDSSSTEKVNNSEPPASTAELEIVKVSYA 334

Query: 65  SANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAG-------LGMQ 124
           + +  +    LPP    + PL + KPSGIGLH+N+I++ V    G           +G+Q
Sbjct: 335 ATSKRQMGASLPPLYGGSSPLTVPKPSGIGLHLNSIVNAVPVVRGATTSIKLADHYIGLQ 394

Query: 125 ------GVSYHILRNEITCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLE 184
                  VS+ +L N    +E +   SS   +S H V+ E   SP E R  +S    + +
Sbjct: 395 VMKSSAVVSHLLLENVRDNTETSIAASSSINQSPHTVEFEHHGSPLEERKSDSQNVDSYK 454

Query: 185 KINNFHPKRKRHEKDSPKSRFMSGRC 198
           ++N +  ++KR    S K      RC
Sbjct: 455 ELNQYSSQKKRKRTPSSKDSDGCKRC 477

[Close]

BLAST of Cla022307 vs. NCBI nr
Match: gi|359476108|ref|XP_002282493.2| (PREDICTED: CRC domain-containing protein TSO1-like [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 69/225 (30.67%), Postives = 101/225 (44.89%), Query Frame = 1


Query: 10  QPLHGMSQRYLQFKEASANAPLN----SFPSNFTSNVK--ATSYD---PEFSVLNLDAAS 69
           Q   GM +R LQF EA  N   N    S+P++  +N +  AT  D   PE S ++L   S
Sbjct: 345 QHQRGMLRRCLQFGEAQLNIITNNPSFSYPTSIAANSRLLATPSDSELPESSCVDLTTTS 404

Query: 70  NNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVS 129
           +N+  A S     +LPP +  N  L  SKPSGIGLH+N+I++ V         L ++   
Sbjct: 405 SNKQLAYSQPVTAMLPPQNSGNSSLAGSKPSGIGLHLNSIVNAVPMGFSSTTSLKVEEKD 464

Query: 130 Y------------HILRN----EITCSEN-ASLT-SSITLKSCHAVK----------AEQ 189
           Y            +++ N    E   +EN AS+  SS T +S H ++           E 
Sbjct: 465 YSSAWRISDSIPSNVIENSAGTEDRRNENKASIAMSSATSQSSHGLEPSKDPLLLKPIEL 524

Query: 190 FRSPYETRNFESNQPSNLEKINNFHPKRKRHEKDSPKSRFMSGRC 198
              P + R F S    +LE+ N   PK++R +  S        RC
Sbjct: 525 HEIPCDKRKFNSEHMDSLEEFNQPSPKKRRKKASSTNDGDGCKRC 569

The following BLAST results are available for this feature:

BLAST of Cla022307 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067FE47_CITSI	2.2e-11	29.08	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002213mg PE=4 SV=1	[more]
A0A067FE47_CITSI	4.3e+01	34.48	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002213mg PE=4 SV=1	[more]
V4UMX3_9ROSI	4.3e+01	34.48	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007369mg PE=4 SV=1	[more]
B9HA26_POPTR	1.1e-07	29.79	Cysteine-rich polycomb-like family protein OS=Populus trichocarpa GN=POPTR_0006s...	[more]
W9S4Z9_9ROSA	1.3e-06	30.04	Uncharacterized protein OS=Morus notabilis GN=L484_005620 PE=4 SV=1	[more]

BLAST of Cla022307 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|568859603\|ref\|XP_006483327.1\|	2.2e-12	28.30	PREDICTED: CRC domain-containing protein TSO1 isoform X2 [Citrus sinensis]	[more]
gi\|568859603\|ref\|XP_006483327.1\|	6.2e+01	34.48	PREDICTED: CRC domain-containing protein TSO1 isoform X2 [Citrus sinensis]	[more]
gi\|568859601\|ref\|XP_006483326.1\|	6.2e+01	34.48	PREDICTED: CRC domain-containing protein TSO1 isoform X1 [Citrus sinensis]	[more]
gi\|567916950\|ref\|XP_006450481.1\|	6.2e+01	34.48	hypothetical protein CICLE_v10007369mg [Citrus clementina]	[more]
gi\|359476108\|ref\|XP_002282493.2\|	6.0e-10	30.67	PREDICTED: CRC domain-containing protein TSO1-like [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla022307	Cla022307	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla022307	Cla022307.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla022307.1.cds2	Cla022307.1.cds2	CDS
Cla022307.1.cds1	Cla022307.1.cds1	CDS