Cla021785.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021785
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 6215393 .. 6216858 (+)
Sequence length	1122

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTGAACTGAGCACAAATTACCTTAAGAAAAACTCGAGTTTACAGCCCTCTGTTTCAGCATCAGAAGAACAGAGCAAGGCAATGTACTGGGTTCAAAAGAACTATGATGTTTTCAAGGAAGATTTTACGAACATGTGGGTTATTACCCAAATGATGAATGGACAGAAGTCGCCAAATTTGTGGAAGAAATTTTTCAAGTTAAAGTTATTATTAATCCACTTTTTGTGGACAAAGCATTGATTAAAATTGATTGTGGTAAGCTAACTCCAGGATTATGGTATGATTATGGGAAGTTTCATTTGATATTTGAAAAATGGAATACATTCAGACATAGCAGACCGTCGGTGATAAAAGACTTTGGTGGGTGGATTTCAATTGAAAATCTCCTACTGGAATACTGGAGTAGGAGTACTTTCGAGGCCATTGGAGCTCACTTTGGTGGTCTGGTTAGTATAGCATCTGAAACATTAAATCTACTCAATGTCTCTAAAGCAAGAATCCAGGTTATGGATAACAAGTGTGGTTTTATGCCGGCCTTAATAGAAATCAAGAATGAGAAAAGAGGCAATATCTTTTTGAATTTTGGTGATATCGAACTTGATAATGATCTTAGTTTCACTAAAGGTGACTTATTCATTAATAATTTTTATAACCTAATTGATCGAGCAAGATTGAATCGGGTTGCAGTAGTGAAGGTATCAATGTGGACTTATCAGGTCATGAATGGGACTTTTTAAATCAGAATAATCCAAGTTTCTCTAGAAATCCTTTCGAGAATTCTATTCAAAAGACCTCTCAAGATTTGAAGCCTTCATCAGAGAACAATATGTTATCATCGAAAAACAGAGGAATTCCGATCACCGGTACTAAAGCAGATAACACGAAGGTGGTTGAACACTTAAGTGCGAAAGCGCTTGAATCTAAAGTAATTGAGACGGTGGCTTTATGGAAGAGTGAGGTTGTAGGCTGCTCCATTAATGAGACTCACATTACTCCTTGTGTTAATTCCCATTCCATCATAAACTCAAATTTTAAATCTATAGAGTCCTCTGCTTTTCCAACACAAGAAGCCGAAAGGTCTGCAGGCCCCACCATCCAAGTCGCTCCAGCTACCCTTTTGGTATTCCAATGTTGATTTAGATGAATTGTCAGAAGTTTTGGTTGACTCGACCAATTAGGAGCCTCCTGCAAATCCCTTCATTTTTTGTCATCCAAGCAACACAGAGAATTCTTCTCAACTAAAGACCACACTTAATGATTTTGAAAAATCGGCTCCCATTAAGAAATTCACTCCACTAGTCATCAAGGAGCAATCACATCCATTCAAGCCATTCACAAAGCATTATGTCAGAAGAAGAACATCATTCCTCAACTCTTGGTCTACCATAGTCAAGTCCGACTTGCTTGAAGAGTGTTATGTTCGCGTTATCGCTCCTGGTTTATTCCCAACAGGTCAGTAA

mRNA sequence

ATGTCCTCTGAACTGAGCACAAATTACCTTAAGAAAAACTCGAGTTTACAGCCCTCTGTTTCAGCATCAGAAGAACAGAGCAAGGCAATGTACTGGGTTCAAAAGAACTATGATGTTTTCAAGGAAGATTTTACGAACATACATAGCAGACCGTCGGTGATAAAAGACTTTGGTGGGTGGATTTCAATTGAAAATCTCCTACTGGAATACTGGAGTAGGAGTACTTTCGAGGCCATTGGAGCTCACTTTGGTGGTCTGGTTAGTATAGCATCTGAAACATTAAATCTACTCAATGTCTCTAAAGCAAGAATCCAGGTTATGGATAACAAGTGTGGTTTTATGCCGGCCTTAATAGAAATCAAGAATGAGAAAAGAGGCAATATCTTTTTGAATTTTGGTGATATCGAACTTGATAATGATCTTAGTTTCACTAAAGGTCATGAATGGGACTTTTTAAATCAGAATAATCCAAGTTTCTCTAGAAATCCTTTCGAGAATTCTATTCAAAAGACCTCTCAAGATTTGAAGCCTTCATCAGAGAACAATATGTTATCATCGAAAAACAGAGGAATTCCGATCACCGGTACTAAAGCAGATAACACGAAGGTGGTTGAACACTTAAGTGCGAAAGCGCTTGAATCTAAAGTAATTGAGACGGTGGCTTTATGGAAGAGTGAGGTTGTAGGCTGCTCCATTAATGAGACTCACATTACTCCTTGTGTTAATTCCCATTCCATCATAAACTCAAATTTTAAATCTATAGAGTCCTCTGCTTTTCCAACACAAGAAGCCGAAAGGTCTGCAGGCCCCACCATCCAAGTCGCTCCAGCTACCCTTTTGGAGCCTCCTGCAAATCCCTTCATTTTTTGTCATCCAAGCAACACAGAGAATTCTTCTCAACTAAAGACCACACTTAATGATTTTGAAAAATCGGCTCCCATTAAGAAATTCACTCCACTAGTCATCAAGGAGCAATCACATCCATTCAAGCCATTCACAAAGCATTATGTCAGAAGAAGAACATCATTCCTCAACTCTTGGTCTACCATAGTCAAGTCCGACTTGCTTGAAGAGTGTTATGTTCGCGTTATCGCTCCTGGTTTATTCCCAACAGGTCAGTAA

Coding sequence (CDS)

ATGTCCTCTGAACTGAGCACAAATTACCTTAAGAAAAACTCGAGTTTACAGCCCTCTGTTTCAGCATCAGAAGAACAGAGCAAGGCAATGTACTGGGTTCAAAAGAACTATGATGTTTTCAAGGAAGATTTTACGAACATACATAGCAGACCGTCGGTGATAAAAGACTTTGGTGGGTGGATTTCAATTGAAAATCTCCTACTGGAATACTGGAGTAGGAGTACTTTCGAGGCCATTGGAGCTCACTTTGGTGGTCTGGTTAGTATAGCATCTGAAACATTAAATCTACTCAATGTCTCTAAAGCAAGAATCCAGGTTATGGATAACAAGTGTGGTTTTATGCCGGCCTTAATAGAAATCAAGAATGAGAAAAGAGGCAATATCTTTTTGAATTTTGGTGATATCGAACTTGATAATGATCTTAGTTTCACTAAAGGTCATGAATGGGACTTTTTAAATCAGAATAATCCAAGTTTCTCTAGAAATCCTTTCGAGAATTCTATTCAAAAGACCTCTCAAGATTTGAAGCCTTCATCAGAGAACAATATGTTATCATCGAAAAACAGAGGAATTCCGATCACCGGTACTAAAGCAGATAACACGAAGGTGGTTGAACACTTAAGTGCGAAAGCGCTTGAATCTAAAGTAATTGAGACGGTGGCTTTATGGAAGAGTGAGGTTGTAGGCTGCTCCATTAATGAGACTCACATTACTCCTTGTGTTAATTCCCATTCCATCATAAACTCAAATTTTAAATCTATAGAGTCCTCTGCTTTTCCAACACAAGAAGCCGAAAGGTCTGCAGGCCCCACCATCCAAGTCGCTCCAGCTACCCTTTTGGAGCCTCCTGCAAATCCCTTCATTTTTTGTCATCCAAGCAACACAGAGAATTCTTCTCAACTAAAGACCACACTTAATGATTTTGAAAAATCGGCTCCCATTAAGAAATTCACTCCACTAGTCATCAAGGAGCAATCACATCCATTCAAGCCATTCACAAAGCATTATGTCAGAAGAAGAACATCATTCCTCAACTCTTGGTCTACCATAGTCAAGTCCGACTTGCTTGAAGAGTGTTATGTTCGCGTTATCGCTCCTGGTTTATTCCCAACAGGTCAGTAA

Protein sequence

MSSELSTNYLKKNSSLQPSVSASEEQSKAMYWVQKNYDVFKEDFTNIHSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGGLVSIASETLNLLNVSKARIQVMDNKCGFMPALIEIKNEKRGNIFLNFGDIELDNDLSFTKGHEWDFLNQNNPSFSRNPFENSIQKTSQDLKPSSENNMLSSKNRGIPITGTKADNTKVVEHLSAKALESKVIETVALWKSEVVGCSINETHITPCVNSHSIINSNFKSIESSAFPTQEAERSAGPTIQVAPATLLEPPANPFIFCHPSNTENSSQLKTTLNDFEKSAPIKKFTPLVIKEQSHPFKPFTKHYVRRRTSFLNSWSTIVKSDLLEECYVRVIAPGLFPTGQ

Homology

[Close]

BLAST of Cla021785 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 1


Query: 26  QSKAMYWVQKNYDVFKEDFTNIHSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGG 85
           ++K    V + Y  F+E     H+ P  +  +GGWI +  + L  W+  +F  IG   GG
Sbjct: 183 KNKGWTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGG 242

Query: 86  LVSIASETLNLLNVSKARIQVMDNKCGFMPALIE-IKNEKRGNI 129
            + +A ET  L ++ +A I+V DN  GF+PA I+ I  E+R  I
Sbjct: 243 FMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYI 286

[Close]

BLAST of Cla021785 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 1


Query: 26  QSKAMYWVQKNYDVFKEDFTNIHSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGG 85
           ++K    V + Y  F+E     H+ P  +  +GGWI +  + L  W+  +F  IG   GG
Sbjct: 183 KNKGWTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGG 242

Query: 86  LVSIASETLNLLNVSKARIQVMDNKCGFMPALIE-IKNEKRGNI 129
            + +A ET  L ++ +A I+V DN  GF+PA I+ I  E+R  I
Sbjct: 243 FMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYI 286

[Close]

BLAST of Cla021785 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 1


Query: 48  HSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGGLVSIASETLNLLNVSKARIQVM 107
           H+ P +I  +GGW     + L  W+  TF+ IG   GGL+ +A ET +  N+ +A+I++ 
Sbjct: 278 HATPKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIR 337

Query: 108 DNKCGFMPALIEIKNEKRGNIF 130
            N  GF+PA + I  +  GN F
Sbjct: 338 YNYSGFLPANVRI-FDNEGNKF 358

The following BLAST results are available for this feature:

BLAST of Cla021785 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	2.7e-07	34.62	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla021785 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135793\|gb\|ADN33672.1\|	3.9e-07	34.62	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	6.7e-07	36.59	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla021785	Cla021785	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla021785	Cla021785.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla021785.1.cds1	Cla021785.1.cds1	CDS
Cla021785.1.cds2	Cla021785.1.cds2	CDS
Cla021785.1.cds3	Cla021785.1.cds3	CDS
Cla021785.1.cds4	Cla021785.1.cds4	CDS