Cla021785 (gene) Watermelon (97103) v1

Overview
NameCla021785
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 6215393 .. 6216858 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCTGAACTGAGCACAAATTACCTTAAGAAAAACTCGAGTTTACAGCCCTCTGTTTCAGCATCAGAAGAACAGAGCAAGGCAATGTACTGGGTTCAAAAGAACTATGATGTTTTCAAGGAAGATTTTACGAACATGTGGGTTATTACCCAAATGATGAATGGACAGAAGTCGCCAAATTTGTGGAAGAAATTTTTCAAGTTAAAGTTATTATTAATCCACTTTTTGTGGACAAAGCATTGATTAAAATTGATTGTGGTAAGCTAACTCCAGGATTATGGTATGATTATGGGAAGTTTCATTTGATATTTGAAAAATGGAATACATTCAGACATAGCAGACCGTCGGTGATAAAAGACTTTGGTGGGTGGATTTCAATTGAAAATCTCCTACTGGAATACTGGAGTAGGAGTACTTTCGAGGCCATTGGAGCTCACTTTGGTGGTCTGGTTAGTATAGCATCTGAAACATTAAATCTACTCAATGTCTCTAAAGCAAGAATCCAGGTTATGGATAACAAGTGTGGTTTTATGCCGGCCTTAATAGAAATCAAGAATGAGAAAAGAGGCAATATCTTTTTGAATTTTGGTGATATCGAACTTGATAATGATCTTAGTTTCACTAAAGGTGACTTATTCATTAATAATTTTTATAACCTAATTGATCGAGCAAGATTGAATCGGGTTGCAGTAGTGAAGGTATCAATGTGGACTTATCAGGTCATGAATGGGACTTTTTAAATCAGAATAATCCAAGTTTCTCTAGAAATCCTTTCGAGAATTCTATTCAAAAGACCTCTCAAGATTTGAAGCCTTCATCAGAGAACAATATGTTATCATCGAAAAACAGAGGAATTCCGATCACCGGTACTAAAGCAGATAACACGAAGGTGGTTGAACACTTAAGTGCGAAAGCGCTTGAATCTAAAGTAATTGAGACGGTGGCTTTATGGAAGAGTGAGGTTGTAGGCTGCTCCATTAATGAGACTCACATTACTCCTTGTGTTAATTCCCATTCCATCATAAACTCAAATTTTAAATCTATAGAGTCCTCTGCTTTTCCAACACAAGAAGCCGAAAGGTCTGCAGGCCCCACCATCCAAGTCGCTCCAGCTACCCTTTTGGTATTCCAATGTTGATTTAGATGAATTGTCAGAAGTTTTGGTTGACTCGACCAATTAGGAGCCTCCTGCAAATCCCTTCATTTTTTGTCATCCAAGCAACACAGAGAATTCTTCTCAACTAAAGACCACACTTAATGATTTTGAAAAATCGGCTCCCATTAAGAAATTCACTCCACTAGTCATCAAGGAGCAATCACATCCATTCAAGCCATTCACAAAGCATTATGTCAGAAGAAGAACATCATTCCTCAACTCTTGGTCTACCATAGTCAAGTCCGACTTGCTTGAAGAGTGTTATGTTCGCGTTATCGCTCCTGGTTTATTCCCAACAGGTCAGTAA

mRNA sequence

ATGTCCTCTGAACTGAGCACAAATTACCTTAAGAAAAACTCGAGTTTACAGCCCTCTGTTTCAGCATCAGAAGAACAGAGCAAGGCAATGTACTGGGTTCAAAAGAACTATGATGTTTTCAAGGAAGATTTTACGAACATACATAGCAGACCGTCGGTGATAAAAGACTTTGGTGGGTGGATTTCAATTGAAAATCTCCTACTGGAATACTGGAGTAGGAGTACTTTCGAGGCCATTGGAGCTCACTTTGGTGGTCTGGTTAGTATAGCATCTGAAACATTAAATCTACTCAATGTCTCTAAAGCAAGAATCCAGGTTATGGATAACAAGTGTGGTTTTATGCCGGCCTTAATAGAAATCAAGAATGAGAAAAGAGGCAATATCTTTTTGAATTTTGGTGATATCGAACTTGATAATGATCTTAGTTTCACTAAAGGTCATGAATGGGACTTTTTAAATCAGAATAATCCAAGTTTCTCTAGAAATCCTTTCGAGAATTCTATTCAAAAGACCTCTCAAGATTTGAAGCCTTCATCAGAGAACAATATGTTATCATCGAAAAACAGAGGAATTCCGATCACCGGTACTAAAGCAGATAACACGAAGGTGGTTGAACACTTAAGTGCGAAAGCGCTTGAATCTAAAGTAATTGAGACGGTGGCTTTATGGAAGAGTGAGGTTGTAGGCTGCTCCATTAATGAGACTCACATTACTCCTTGTGTTAATTCCCATTCCATCATAAACTCAAATTTTAAATCTATAGAGTCCTCTGCTTTTCCAACACAAGAAGCCGAAAGGTCTGCAGGCCCCACCATCCAAGTCGCTCCAGCTACCCTTTTGGAGCCTCCTGCAAATCCCTTCATTTTTTGTCATCCAAGCAACACAGAGAATTCTTCTCAACTAAAGACCACACTTAATGATTTTGAAAAATCGGCTCCCATTAAGAAATTCACTCCACTAGTCATCAAGGAGCAATCACATCCATTCAAGCCATTCACAAAGCATTATGTCAGAAGAAGAACATCATTCCTCAACTCTTGGTCTACCATAGTCAAGTCCGACTTGCTTGAAGAGTGTTATGTTCGCGTTATCGCTCCTGGTTTATTCCCAACAGGTCAGTAA

Coding sequence (CDS)

ATGTCCTCTGAACTGAGCACAAATTACCTTAAGAAAAACTCGAGTTTACAGCCCTCTGTTTCAGCATCAGAAGAACAGAGCAAGGCAATGTACTGGGTTCAAAAGAACTATGATGTTTTCAAGGAAGATTTTACGAACATACATAGCAGACCGTCGGTGATAAAAGACTTTGGTGGGTGGATTTCAATTGAAAATCTCCTACTGGAATACTGGAGTAGGAGTACTTTCGAGGCCATTGGAGCTCACTTTGGTGGTCTGGTTAGTATAGCATCTGAAACATTAAATCTACTCAATGTCTCTAAAGCAAGAATCCAGGTTATGGATAACAAGTGTGGTTTTATGCCGGCCTTAATAGAAATCAAGAATGAGAAAAGAGGCAATATCTTTTTGAATTTTGGTGATATCGAACTTGATAATGATCTTAGTTTCACTAAAGGTCATGAATGGGACTTTTTAAATCAGAATAATCCAAGTTTCTCTAGAAATCCTTTCGAGAATTCTATTCAAAAGACCTCTCAAGATTTGAAGCCTTCATCAGAGAACAATATGTTATCATCGAAAAACAGAGGAATTCCGATCACCGGTACTAAAGCAGATAACACGAAGGTGGTTGAACACTTAAGTGCGAAAGCGCTTGAATCTAAAGTAATTGAGACGGTGGCTTTATGGAAGAGTGAGGTTGTAGGCTGCTCCATTAATGAGACTCACATTACTCCTTGTGTTAATTCCCATTCCATCATAAACTCAAATTTTAAATCTATAGAGTCCTCTGCTTTTCCAACACAAGAAGCCGAAAGGTCTGCAGGCCCCACCATCCAAGTCGCTCCAGCTACCCTTTTGGAGCCTCCTGCAAATCCCTTCATTTTTTGTCATCCAAGCAACACAGAGAATTCTTCTCAACTAAAGACCACACTTAATGATTTTGAAAAATCGGCTCCCATTAAGAAATTCACTCCACTAGTCATCAAGGAGCAATCACATCCATTCAAGCCATTCACAAAGCATTATGTCAGAAGAAGAACATCATTCCTCAACTCTTGGTCTACCATAGTCAAGTCCGACTTGCTTGAAGAGTGTTATGTTCGCGTTATCGCTCCTGGTTTATTCCCAACAGGTCAGTAA

Protein sequence

MSSELSTNYLKKNSSLQPSVSASEEQSKAMYWVQKNYDVFKEDFTNIHSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGGLVSIASETLNLLNVSKARIQVMDNKCGFMPALIEIKNEKRGNIFLNFGDIELDNDLSFTKGHEWDFLNQNNPSFSRNPFENSIQKTSQDLKPSSENNMLSSKNRGIPITGTKADNTKVVEHLSAKALESKVIETVALWKSEVVGCSINETHITPCVNSHSIINSNFKSIESSAFPTQEAERSAGPTIQVAPATLLEPPANPFIFCHPSNTENSSQLKTTLNDFEKSAPIKKFTPLVIKEQSHPFKPFTKHYVRRRTSFLNSWSTIVKSDLLEECYVRVIAPGLFPTGQ
Homology
[Close]
BLAST of Cla021785 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 1 

Query: 26  QSKAMYWVQKNYDVFKEDFTNIHSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGG 85
           ++K    V + Y  F+E     H+ P  +  +GGWI +  + L  W+  +F  IG   GG
Sbjct: 183 KNKGWTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGG 242

Query: 86  LVSIASETLNLLNVSKARIQVMDNKCGFMPALIE-IKNEKRGNI 129
            + +A ET  L ++ +A I+V DN  GF+PA I+ I  E+R  I
Sbjct: 243 FMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYI 286

[Close]
BLAST of Cla021785 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 1 

Query: 26  QSKAMYWVQKNYDVFKEDFTNIHSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGG 85
           ++K    V + Y  F+E     H+ P  +  +GGWI +  + L  W+  +F  IG   GG
Sbjct: 183 KNKGWTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGG 242

Query: 86  LVSIASETLNLLNVSKARIQVMDNKCGFMPALIE-IKNEKRGNI 129
            + +A ET  L ++ +A I+V DN  GF+PA I+ I  E+R  I
Sbjct: 243 FMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYI 286

[Close]
BLAST of Cla021785 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 1 

Query: 48  HSRPSVIKDFGGWISIENLLLEYWSRSTFEAIGAHFGGLVSIASETLNLLNVSKARIQVM 107
           H+ P +I  +GGW     + L  W+  TF+ IG   GGL+ +A ET +  N+ +A+I++ 
Sbjct: 278 HATPKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIR 337

Query: 108 DNKCGFMPALIEIKNEKRGNIF 130
            N  GF+PA + I  +  GN F
Sbjct: 338 YNYSGFLPANVRI-FDNEGNKF 358

The following BLAST results are available for this feature:
BLAST of Cla021785 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GB30_CUCME2.7e-0734.62Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla021785 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135793|gb|ADN33672.1|3.9e-0734.62hypothetical protein [Cucumis melo subsp. melo][more]
gi|659071590|ref|XP_008460776.1|6.7e-0736.59PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021785Cla021785.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla021785ClCG05G006490Watermelon (Charleston Gray)wcgwmB286
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla021785Cucurbita pepo (Zucchini)cpewmB613
Cla021785Cucurbita pepo (Zucchini)cpewmB845
Cla021785Bottle gourd (USVL1VR-Ls)lsiwmB017
Cla021785Bottle gourd (USVL1VR-Ls)lsiwmB362
Cla021785Cucumber (Gy14) v2cgybwmB217
Cla021785Melon (DHL92) v3.6.1medwmB094
Cla021785Melon (DHL92) v3.6.1medwmB447
Cla021785Silver-seed gourdcarwmB0070
Cla021785Silver-seed gourdcarwmB0269
Cla021785Silver-seed gourdcarwmB0700
Cla021785Silver-seed gourdcarwmB0953
Cla021785Cucumber (Chinese Long) v3cucwmB239
Cla021785Watermelon (97103) v2wmwmbB206
Cla021785Watermelon (97103) v2wmwmbB217
Cla021785Wax gourdwgowmB067
Cla021785Wax gourdwgowmB201
Cla021785Watermelon (97103) v1wmwmB138
Cla021785Cucumber (Gy14) v1cgywmB479
Cla021785Cucurbita maxima (Rimu)cmawmB242
Cla021785Cucurbita maxima (Rimu)cmawmB344
Cla021785Cucurbita maxima (Rimu)cmawmB798
Cla021785Cucurbita maxima (Rimu)cmawmB869
Cla021785Cucurbita moschata (Rifu)cmowmB231
Cla021785Cucurbita moschata (Rifu)cmowmB341
Cla021785Cucurbita moschata (Rifu)cmowmB793
Cla021785Cucurbita moschata (Rifu)cmowmB856
Cla021785Melon (DHL92) v3.5.1mewmB096
Cla021785Melon (DHL92) v3.5.1mewmB461
Cla021785Watermelon (Charleston Gray)wcgwmB332
Cla021785Cucumber (Chinese Long) v2cuwmB233
Cla021785Cucurbita pepo (Zucchini)cpewmB152
Cla021785Cucurbita pepo (Zucchini)cpewmB329