Cla021590.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021590
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Early light-induced protein 7 (AHRD V1 ***- B2BJD6_RHOCT)
Location	Chr5 : 4479171 .. 4479949 (+)
Sequence length	576

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTTCTGCTGTGATGCAATCCATTCCGGCAAGCTCGGCTACTCGAGGTGTCCACAAGACACCAACGAATCGCCTTCTCCCGGCGGCGGTTCGACCGTGCTCCAGGAGCACAGCCTCATTTCGAGTGAGATGCACGGCGGAGGTATTCCCTTGGCTGTTCCATTTTCCTTGTGATAGATTGCACTTCTACTTTTGTGATCGAATTATCTAGGGCTTTAATCGTGGAGTAATCTGTATTTCTGCTTTGATTTTCAGGAGGATCAGAGAGAACGAGTGATTCCTACATCGATCCCATCGTCGTCTCCCAAACCAGAGCCGTCTCCCTCGTCACCACCAAAGGTAAGTAAACCTGCAACATCACTGGCTGTTTCTCGATGAACGGATCAAAACGAGATAGATGGTTAATTTGAGATCCGGTTATTTCCGCAGGTGAGTACGAATTTCACAGACATTTTGGCGTTCAGCGGGCCAGGGCCAGAGAGGATCAACGGGCGGCTTGCAATGATCGGATTCGTGGCTGCCCTAGCGGTTGAACTATCGAAGGGGCAGGACGTGTTCGAGCAAATAGCAAACGGAGGGATCCCATGGTTTGTGGGAACGAGCGTGGTTCTGACATTGGCATCGTTGATTCCATTGTTTAGAGGAGTAAGCGCTGAGTCAAAGTCGAAGGGGATTATGAGTTCGAACGCGGAGCTTTGGAATGGGAGGTTTGCGATGTTGGGGCTTGTTGCTTTGGCCTTCACTGAATATGTTAAAGGTGGAAGCCTTGTGTAA

mRNA sequence

ATGGCCGCTTCTGCTGTGATGCAATCCATTCCGGCAAGCTCGGCTACTCGAGGTGTCCACAAGACACCAACGAATCGCCTTCTCCCGGCGGCGGTTCGACCGTGCTCCAGGAGCACAGCCTCATTTCGAGTGAGATGCACGGCGGAGGAGGATCAGAGAGAACGAGTGATTCCTACATCGATCCCATCGTCGTCTCCCAAACCAGAGCCGTCTCCCTCGTCACCACCAAAGGTGAGTACGAATTTCACAGACATTTTGGCGTTCAGCGGGCCAGGGCCAGAGAGGATCAACGGGCGGCTTGCAATGATCGGATTCGTGGCTGCCCTAGCGGTTGAACTATCGAAGGGGCAGGACGTGTTCGAGCAAATAGCAAACGGAGGGATCCCATGGTTTGTGGGAACGAGCGTGGTTCTGACATTGGCATCGTTGATTCCATTGTTTAGAGGAGTAAGCGCTGAGTCAAAGTCGAAGGGGATTATGAGTTCGAACGCGGAGCTTTGGAATGGGAGGTTTGCGATGTTGGGGCTTGTTGCTTTGGCCTTCACTGAATATGTTAAAGGTGGAAGCCTTGTGTAA

Coding sequence (CDS)

ATGGCCGCTTCTGCTGTGATGCAATCCATTCCGGCAAGCTCGGCTACTCGAGGTGTCCACAAGACACCAACGAATCGCCTTCTCCCGGCGGCGGTTCGACCGTGCTCCAGGAGCACAGCCTCATTTCGAGTGAGATGCACGGCGGAGGAGGATCAGAGAGAACGAGTGATTCCTACATCGATCCCATCGTCGTCTCCCAAACCAGAGCCGTCTCCCTCGTCACCACCAAAGGTGAGTACGAATTTCACAGACATTTTGGCGTTCAGCGGGCCAGGGCCAGAGAGGATCAACGGGCGGCTTGCAATGATCGGATTCGTGGCTGCCCTAGCGGTTGAACTATCGAAGGGGCAGGACGTGTTCGAGCAAATAGCAAACGGAGGGATCCCATGGTTTGTGGGAACGAGCGTGGTTCTGACATTGGCATCGTTGATTCCATTGTTTAGAGGAGTAAGCGCTGAGTCAAAGTCGAAGGGGATTATGAGTTCGAACGCGGAGCTTTGGAATGGGAGGTTTGCGATGTTGGGGCTTGTTGCTTTGGCCTTCACTGAATATGTTAAAGGTGGAAGCCTTGTGTAA

Protein sequence

MAASAVMQSIPASSATRGVHKTPTNRLLPAAVRPCSRSTASFRVRCTAEEDQRERVIPTSIPSSSPKPEPSPSSPPKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVELSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAMLGLVALAFTEYVKGGSLV

Homology

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BLAST of Cla021590 vs. Swiss-Prot
Match: ELIP1_ARATH (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.7e-54
Identity = 116/194 (59.79%), Postives = 136/194 (70.10%), Query Frame = 1


Query: 3   ASAVMQSIPASSATRGVHKTPTNRLLPAAVRPCSRSTASFRVRCTAE----EDQRERVIP 62
           AS  MQS+ A   T    K  TN+L  A   P  +      VRC AE     +       
Sbjct: 4   ASFNMQSVFAGGLT--TRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPS 63

Query: 63  TSIPSSSPK-PEPSPSSPPKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVELSKGQ 122
           TS     PK P P P   PKVST F+D+LAFSGP PERINGRLAM+GFVAALAVELSKG+
Sbjct: 64  TSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGE 123

Query: 123 DVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAMLGLV 182
           +V  QI++GG+ WF+GT+ +LTLASL+PLF+G+S ESKSKGIM+S+AELWNGRFAMLGLV
Sbjct: 124 NVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLV 183

Query: 183 ALAFTEYVKGGSLV 192
           ALAFTE+VKGG+LV
Sbjct: 184 ALAFTEFVKGGTLV 195

[Close]

BLAST of Cla021590 vs. Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-53
Identity = 112/197 (56.85%), Postives = 145/197 (73.60%), Query Frame = 1


Query: 1   MAASAVMQSIPASSATRGVHKTPTNRL--LPAAVRPCSRSTASFRVRCTAEEDQRER--- 60
           MA S+  QSI ++S T    ++  N+   +P+   P  R   S +VR  AE + +E+   
Sbjct: 1   MAVSSC-QSIMSNSMTNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKV 60

Query: 61  -VIPTSIPSSSPKPEPSPSSPPKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVELS 120
            V PT+  +S+P P+P+ + PPK+ST F+D++AFSGP PERINGRLAMIGFVAA+ VE++
Sbjct: 61  AVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIA 120

Query: 121 KGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAML 180
           KGQ + EQ++ GG+ WF+GTSV+L+LASLIP F+GVS ESKSK IMSS+AE WNGR AML
Sbjct: 121 KGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAML 180

Query: 181 GLVALAFTEYVKGGSLV 192
           GLVALAFTE+VKG SLV
Sbjct: 181 GLVALAFTEFVKGTSLV 196

[Close]

BLAST of Cla021590 vs. Swiss-Prot
Match: ELIP2_ARATH (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.6e-51
Identity = 110/199 (55.28%), Postives = 141/199 (70.85%), Query Frame = 1


Query: 3   ASAVMQSIPASSA----TRGVHKTPTNRLLPAAVRPCSRSTASFRVRCTAEED--QRERV 62
           AS  MQS+ A+ +    TR +  T  N+L    + P         VRC A+ D  + +  
Sbjct: 4   ASFNMQSVFAAPSGVLTTRNIRNT--NQLFFKRIAPVG-------VRCMAQGDPIKEDPS 63

Query: 63  IPTS----IPSSSPKPEPSPSSPPKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVE 122
           +P++     P   P+  P P S PKVST F D+LAFSGP PERINGRLAM+GFVAA+A+E
Sbjct: 64  VPSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAME 123

Query: 123 LSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFA 182
           LSKG++VF QI++GG+ WF+GT+ +LTLAS++PLF+G+ AE+KSKG M+S+AELWNGRFA
Sbjct: 124 LSKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFA 183

Query: 183 MLGLVALAFTEYVKGGSLV 192
           MLGLVALAFTEYV GG+LV
Sbjct: 184 MLGLVALAFTEYVTGGTLV 193

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BLAST of Cla021590 vs. Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-39
Identity = 92/197 (46.70%), Postives = 121/197 (61.42%), Query Frame = 1


Query: 1   MAASAVMQSIPASSATRGVHKT---PTNRLL--PAAVRPCSRSTASFRVRCTAEEDQRER 60
           MA+S    +IPA S       T   P N  L   +   P  R  A F VR   E++++E 
Sbjct: 1   MASSTCYATIPAMSCRGQSTITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEE 60

Query: 61  VIPTSIPSSSPK-PEPSPSSPPKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVELS 120
                   +    P+ +P+     +    D+ +F G  PERINGR AMIGFVAA+ VEL+
Sbjct: 61  QQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELA 120

Query: 121 KGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAML 180
            G+DVF Q+ NGG+ WF+ TS VL LA+LIP++RG+S E+K+ G  +S+AE+WNGRFAM+
Sbjct: 121 TGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMI 180

Query: 181 GLVALAFTEYVKGGSLV 192
           GLVALAFTEYVKGG L+
Sbjct: 181 GLVALAFTEYVKGGPLI 197

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BLAST of Cla021590 vs. Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.3e-34
Identity = 82/163 (50.31%), Postives = 103/163 (63.19%), Query Frame = 1


Query: 30  AAVRPCSRSTASFRVRCTAEEDQRERVIPTSIPSSSPKPEPSPSSPPKVSTNFTDILAFS 89
           AAV P S S +SF  R      +R  V+     + +  P   P + PK ST+  D +AFS
Sbjct: 13  AAVVPRS-SASSFGARSLPALGRRALVVR----AQTEGPSAPPPNKPKASTSIWDEMAFS 72

Query: 90  GPGPERINGRLAMIGFVAALAVELSKGQDVFEQIANG-GIPWFVGTSVVLTLASLIPLFR 149
           GP PERINGRLAM+GFV ALAVE  +G  +  Q+ +G G  WF  T  VL++ASL+PL +
Sbjct: 73  GPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQ 132

Query: 150 GVSAESKSKGIMSSNAELWNGRFAMLGLVALAFTEYVKGGSLV 192
           G SAE ++  IM++NAELWNGRFAMLGLVALA TE + G   +
Sbjct: 133 GESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170

[Close]

BLAST of Cla021590 vs. TrEMBL
Match: A0A0A0LA49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 6.8e-87
Identity = 169/192 (88.02%), Postives = 180/192 (93.75%), Query Frame = 1


Query: 1   MAASAVMQSIPASSATRGVHKTPTNRLLPAAVRPCSRSTASFRVRCTAEEDQRERVIPTS 60
           MAASAVMQSI +++ATRGV++T TNRLLPAA+RPCSRSTA+FRVRC AEEDQRE+ IP+S
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  IPSSSPKPEPSPSSPPKV-STNFTDILAFSGPGPERINGRLAMIGFVAALAVELSKGQDV 120
           IP S PKPEPSPS P KV ST  TDILAFSGPGPERINGRLAMIGFVAALAVE+SKGQDV
Sbjct: 61  IPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAMLGLVAL 180
           FEQIANGGIPWFVGTSVVLTLASLIPLF+GVSAES SKGIMSSNAELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEYVKGGSLV 192
           AFTEYVKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of Cla021590 vs. TrEMBL
Match: W9RXQ5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013325 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.2e-60
Identity = 132/198 (66.67%), Postives = 155/198 (78.28%), Query Frame = 1


Query: 1   MAASAVMQ-SIPASS---ATRGVHKTPTNRLLPAAVRP-CSRSTASFRVRC-TAEEDQRE 60
           MA  AVMQ S+  SS   A  G+ K    + LP+   P   R     RVRC T + +Q+E
Sbjct: 1   MAGPAVMQYSVVTSSFVCAANGIKKA-NKQFLPSLNLPRLRRINTPLRVRCMTQDGEQKE 60

Query: 61  RVIPTSIPSSSPKPEPSPSSP-PKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVEL 120
           +  PT +P+S P+P P+PS P PKVST F+DILAFSGP PERINGRLAM+GFVAA+AVEL
Sbjct: 61  Q--PTPVPNSPPQPTPAPSRPTPKVSTKFSDILAFSGPAPERINGRLAMVGFVAAMAVEL 120

Query: 121 SKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAM 180
           SKGQDVF QI+NGGI WFVGTS+VLTLASL+PLF+GVS ESKS G+M+S+AELWNGRFAM
Sbjct: 121 SKGQDVFAQISNGGISWFVGTSIVLTLASLVPLFKGVSVESKSSGVMTSDAELWNGRFAM 180

Query: 181 LGLVALAFTEYVKGGSLV 192
           LGLVALAFTEYVKGG+LV
Sbjct: 181 LGLVALAFTEYVKGGTLV 195

[Close]

BLAST of Cla021590 vs. TrEMBL
Match: A0A166H4J8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002366 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-58
Identity = 125/199 (62.81%), Postives = 152/199 (76.38%), Query Frame = 1


Query: 1   MAASAVMQSIPASSATRGVHKTPTNRLLPA--AVRPC-SRSTASFRVRCTAEEDQRERVI 60
           MA+S+VMQS  AS  TRG+     N ++PA  A  P  SR +AS R++C AE+ Q+E   
Sbjct: 1   MASSSVMQSTLASPVTRGITGRKLN-IVPAKCAFMPSLSRRSASLRLKCMAEDGQKEESS 60

Query: 61  PTSIPSSSPKPEPSPSSP-----PKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVE 120
           P + P+ +  PEP P  P     PK ST+F D+LAFSGP PERINGRLAMIGFVAA+  E
Sbjct: 61  PVTSPTPAAAPEPIPFKPTPPPTPKASTSFFDVLAFSGPAPERINGRLAMIGFVAAIGAE 120

Query: 121 LSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFA 180
           L+ GQDVF QI+NGG+ WF+GTSVVL+LASLIPLF+GVS +SKS G+M+S+AELWNGR A
Sbjct: 121 LASGQDVFSQISNGGVTWFLGTSVVLSLASLIPLFKGVSVQSKSNGVMTSDAELWNGRIA 180

Query: 181 MLGLVALAFTEYVKGGSLV 192
           MLGLVALAFTEYVKGG+LV
Sbjct: 181 MLGLVALAFTEYVKGGALV 198

[Close]

BLAST of Cla021590 vs. TrEMBL
Match: Q850G4_ARAHY (Putative early light induced protein (Fragment) OS=Arachis hypogaea GN=Gsi-39 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.7e-58
Identity = 124/187 (66.31%), Postives = 145/187 (77.54%), Query Frame = 1


Query: 3   ASAVMQSIPASSATRGVHKTPTNRL-LPAAVRPCSRSTASFRVRCTAEEDQRERVIPTSI 62
           +S  MQSI AS  TR   ++  N+  +PA   P  R  AS  VR  AEE+Q+E+    + 
Sbjct: 4   SSYAMQSILASPMTRTPSRSRVNQFGVPALYMPNMRRNASLSVRSMAEEEQKEQSTEPTS 63

Query: 63  PSSSPKPEPSPSSPPKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVELSKGQDVFE 122
           P + P P+P P SP K+ST F+D+LAFSGP PERINGRLAMIGFVAALAVELS GQD+  
Sbjct: 64  PVTPPPPKPQPRSP-KMSTKFSDVLAFSGPAPERINGRLAMIGFVAALAVELSNGQDLLS 123

Query: 123 QIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAMLGLVALAF 182
           QI+NGGIPWF+GTSVVL+LASLIPLF+GVS ESKS G MSS+AELWNGRFAMLGL+ALAF
Sbjct: 124 QISNGGIPWFLGTSVVLSLASLIPLFQGVSVESKSGGFMSSDAELWNGRFAMLGLIALAF 183

Query: 183 TEYVKGG 189
           TEYVKGG
Sbjct: 184 TEYVKGG 189

[Close]

BLAST of Cla021590 vs. TrEMBL
Match: A0A059D2U2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01895 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.6e-58
Identity = 125/199 (62.81%), Postives = 147/199 (73.87%), Query Frame = 1


Query: 1   MAASAVMQSIPASSATR---GVHKTPTNRLLPAAVRPCSRSTASFRVRCTAEEDQRERVI 60
           MA++ +M SIP S  T       K+    L PA   P        RVRC  EE + E   
Sbjct: 1   MASTILMHSIPVSPTTTIDLSSRKSVARGLFPANHSPRLAPRGGLRVRCMTEEIKPEGST 60

Query: 61  PT---SIPSSSPKPEPSPSSPPK--VSTNFTDILAFSGPGPERINGRLAMIGFVAALAVE 120
            T    +PSSSP P PSPS  PK  VSTNFTD+ AFSGP PERINGRLAMIGFVAA+AVE
Sbjct: 61  ETPASDVPSSSPTPTPSPSPKPKRKVSTNFTDVFAFSGPAPERINGRLAMIGFVAAIAVE 120

Query: 121 LSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFA 180
           LSKGQD+F QI++GGIPWF+GTSV+L++ASL+PLF+GV+ ESKS G+M+S+AELWNGR A
Sbjct: 121 LSKGQDLFAQISDGGIPWFLGTSVLLSVASLVPLFQGVTVESKSDGLMTSDAELWNGRLA 180

Query: 181 MLGLVALAFTEYVKGGSLV 192
           MLGLVALAFTEYVKGG+LV
Sbjct: 181 MLGLVALAFTEYVKGGTLV 199

[Close]

BLAST of Cla021590 vs. NCBI nr
Match: gi|449432666|ref|XP_004134120.1| (PREDICTED: early light-induced protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 9.7e-87
Identity = 169/192 (88.02%), Postives = 180/192 (93.75%), Query Frame = 1


Query: 1   MAASAVMQSIPASSATRGVHKTPTNRLLPAAVRPCSRSTASFRVRCTAEEDQRERVIPTS 60
           MAASAVMQSI +++ATRGV++T TNRLLPAA+RPCSRSTA+FRVRC AEEDQRE+ IP+S
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  IPSSSPKPEPSPSSPPKV-STNFTDILAFSGPGPERINGRLAMIGFVAALAVELSKGQDV 120
           IP S PKPEPSPS P KV ST  TDILAFSGPGPERINGRLAMIGFVAALAVE+SKGQDV
Sbjct: 61  IPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAMLGLVAL 180
           FEQIANGGIPWFVGTSVVLTLASLIPLF+GVSAES SKGIMSSNAELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEYVKGGSLV 192
           AFTEYVKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of Cla021590 vs. NCBI nr
Match: gi|659076329|ref|XP_008438620.1| (PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 323.2 bits (827), Expect = 3.1e-85
Identity = 167/192 (86.98%), Postives = 179/192 (93.23%), Query Frame = 1


Query: 1   MAASAVMQSIPASSATRGVHKTPTNRLLPAAVRPCSRSTASFRVRCTAEEDQRERVIPTS 60
           MAASAVMQSIP+S+A+RGV++T TNRLLPAAVR CSR+T +FRVRCT EEDQRE+ IP+S
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  IPSSSPKPEPSPSSPPKV-STNFTDILAFSGPGPERINGRLAMIGFVAALAVELSKGQDV 120
           IP S PK EP+PSS  KV ST FTDILAFSGPGPERINGRLAMIGFVAALAVE+SKGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAMLGLVAL 180
           FEQIANGGIPWFVGTSVVLTLASLIPLF+GVSAES SKGIMSSNAELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEYVKGGSLV 192
           AFTEYVKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of Cla021590 vs. NCBI nr
Match: gi|703142261|ref|XP_010107710.1| (hypothetical protein L484_013325 [Morus notabilis])

HSP 1 Score: 238.0 bits (606), Expect = 1.3e-59
Identity = 132/198 (66.67%), Postives = 155/198 (78.28%), Query Frame = 1


Query: 1   MAASAVMQ-SIPASS---ATRGVHKTPTNRLLPAAVRP-CSRSTASFRVRC-TAEEDQRE 60
           MA  AVMQ S+  SS   A  G+ K    + LP+   P   R     RVRC T + +Q+E
Sbjct: 1   MAGPAVMQYSVVTSSFVCAANGIKKA-NKQFLPSLNLPRLRRINTPLRVRCMTQDGEQKE 60

Query: 61  RVIPTSIPSSSPKPEPSPSSP-PKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVEL 120
           +  PT +P+S P+P P+PS P PKVST F+DILAFSGP PERINGRLAM+GFVAA+AVEL
Sbjct: 61  Q--PTPVPNSPPQPTPAPSRPTPKVSTKFSDILAFSGPAPERINGRLAMVGFVAAMAVEL 120

Query: 121 SKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAM 180
           SKGQDVF QI+NGGI WFVGTS+VLTLASL+PLF+GVS ESKS G+M+S+AELWNGRFAM
Sbjct: 121 SKGQDVFAQISNGGISWFVGTSIVLTLASLVPLFKGVSVESKSSGVMTSDAELWNGRFAM 180

Query: 181 LGLVALAFTEYVKGGSLV 192
           LGLVALAFTEYVKGG+LV
Sbjct: 181 LGLVALAFTEYVKGGTLV 195

[Close]

BLAST of Cla021590 vs. NCBI nr
Match: gi|1012243693|ref|XP_015941588.1| (PREDICTED: early light-induced protein, chloroplastic [Arachis duranensis])

HSP 1 Score: 237.3 bits (604), Expect = 2.3e-59
Identity = 126/190 (66.32%), Postives = 148/190 (77.89%), Query Frame = 1


Query: 3   ASAVMQSIPASSATRGVHKTPTNRL-LPAAVRPCSRSTASFRVRCTAEEDQRERVIPTSI 62
           +S  MQSI AS  TR   ++  N+  +PA   P  R  AS  VR  AEE+Q+E+    + 
Sbjct: 4   SSYAMQSILASPMTRTPSRSRVNQFGVPALYMPNMRRNASLSVRSMAEEEQKEQSTEPTS 63

Query: 63  PSSSPKPEPSPSSPPKVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVELSKGQDVFE 122
           P + P P+P P SP K+ST F+D+LAFSGP PERINGRLAMIGFVAALAVELS GQD+  
Sbjct: 64  PVTPPPPKPQPRSP-KMSTKFSDVLAFSGPAPERINGRLAMIGFVAALAVELSNGQDLLS 123

Query: 123 QIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAMLGLVALAF 182
           QI+NGGIPWF+GTSVVL+LASLIPLF+GVS ESKS G MSS+AELWNGRFAMLGL+ALAF
Sbjct: 124 QISNGGIPWFLGTSVVLSLASLIPLFQGVSVESKSGGFMSSDAELWNGRFAMLGLIALAF 183

Query: 183 TEYVKGGSLV 192
           TEYVKGG+LV
Sbjct: 184 TEYVKGGTLV 192

[Close]

BLAST of Cla021590 vs. NCBI nr
Match: gi|1009141282|ref|XP_015888111.1| (PREDICTED: early light-induced protein 1, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 235.7 bits (600), Expect = 6.6e-59
Identity = 130/198 (65.66%), Postives = 151/198 (76.26%), Query Frame = 1


Query: 1   MAASAVMQSIPASSAT-RGVHKTPTNRLLPAAVRPCSRSTASFRVRCTAEEDQRERVIPT 60
           MAAS  MQS  ASS T R   K   N   PA ++  S    S +VRC  E++++      
Sbjct: 1   MAASFAMQSTVASSLTCRQSMKKTMNHYYPAQLQRSS----SMKVRCMVEDNKKN----- 60

Query: 61  SIPSSSPKPEPSPSSPP------KVSTNFTDILAFSGPGPERINGRLAMIGFVAALAVEL 120
           S+ SSSP P+P P S P      KVST F+D+LAFSGP PERINGRLAMIGFVAALAVEL
Sbjct: 61  SVSSSSPPPQPQPLSTPPPPPKPKVSTKFSDLLAFSGPAPERINGRLAMIGFVAALAVEL 120

Query: 121 SKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESKSKGIMSSNAELWNGRFAM 180
           S GQD+F+QI NGGIPWF+GTSVVL+LASLIPLF+GVS ESKS+GIM+S+AELWNGRFAM
Sbjct: 121 SNGQDLFDQIGNGGIPWFIGTSVVLSLASLIPLFKGVSVESKSEGIMTSDAELWNGRFAM 180

Query: 181 LGLVALAFTEYVKGGSLV 192
           LGL+ALAFTEYVKGG+LV
Sbjct: 181 LGLIALAFTEYVKGGTLV 189

The following BLAST results are available for this feature:

BLAST of Cla021590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELIP1_ARATH	3.7e-54	59.79	Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana GN=ELIP1 PE...	[more]
ELI_PEA	2.4e-53	56.85	Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
ELIP2_ARATH	8.6e-51	55.28	Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana GN=ELIP2 PE...	[more]
DS22_CRAPL	3.4e-39	46.70	Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum G...	[more]
ELI9_HORVU	7.3e-34	50.31	Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum ...	[more]

BLAST of Cla021590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA49_CUCSA	6.8e-87	88.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145780 PE=4 SV=1	[more]
W9RXQ5_9ROSA	9.2e-60	66.67	Uncharacterized protein OS=Morus notabilis GN=L484_013325 PE=4 SV=1	[more]
A0A166H4J8_DAUCA	1.3e-58	62.81	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002366 PE=4 SV=1	[more]
Q850G4_ARAHY	1.7e-58	66.31	Putative early light induced protein (Fragment) OS=Arachis hypogaea GN=Gsi-39 PE...	[more]
A0A059D2U2_EUCGR	6.6e-58	62.81	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01895 PE=4 SV=1	[more]

BLAST of Cla021590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432666\|ref\|XP_004134120.1\|	9.7e-87	88.02	PREDICTED: early light-induced protein 1, chloroplastic [Cucumis sativus]	[more]
gi\|659076329\|ref\|XP_008438620.1\|	3.1e-85	86.98	PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo]	[more]
gi\|703142261\|ref\|XP_010107710.1\|	1.3e-59	66.67	hypothetical protein L484_013325 [Morus notabilis]	[more]
gi\|1012243693\|ref\|XP_015941588.1\|	2.3e-59	66.32	PREDICTED: early light-induced protein, chloroplastic [Arachis duranensis]	[more]
gi\|1009141282\|ref\|XP_015888111.1\|	6.6e-59	65.66	PREDICTED: early light-induced protein 1, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla021590	Cla021590	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla021590	Cla021590.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla021590.1.cds1	Cla021590.1.cds1	CDS
Cla021590.1.cds2	Cla021590.1.cds2	CDS
Cla021590.1.cds3	Cla021590.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 93..183 score: 2.
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 68..187 score: 1.57
None	No IPR available	GENE3D	G3DSA:1.20.1620.10		coord: 94..154 score: 2.2E-4coord: 162..189 score: 2.
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 25..191 score: 9.1
None	No IPR available	PANTHER	PTHR14154:SF5	EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 25..191 score: 9.1