Cla021164.1 (mRNA) Watermelon (97103) v1

Overview
NameCla021164
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCyclic nucleotide-gated ion channel 1 (AHRD V1 ***- B6U0R1_MAIZE); contains Interpro domain(s) IPR018490 Cyclic nucleotide-binding-like
LocationChr5 : 872842 .. 873549 (-)
Sequence length561
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATTAACCCAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCATATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGAGTTCTTTTCCTTCAACTTTGGCACATTCCACCTGTGAAATTCTCAACATTTGTTAACTCAGAATGCTTTAGGTGCTGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCGATGCGTGAATATCTCCAGCCTGTGTTATTCACAAAAAGAGGTTCATTCTGCAAGAGGTTGACCCAATTGATATGATGCTATTTATCATGAAAGGAAAGCTGGCTACCATTATTACCTGGGGTTGGGAAAAGCGACCAGTACGTGGTCACTCTTAACGCTGGTGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCAATGAATACCACCTCCACTTCTCTTCCCATTTCAAACAGAACAATTAATACTCTAATTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACTAGACAGTACCATTTCCAGCGCCTCAATAGCACGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTACACATCAATTGTTCTAG

mRNA sequence

ATGAAAATTAACCCAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCATATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGCTGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCGATGCGTGAATATCTCCAGCCTGAAAGCTGGCTACCATTATTACCTGGGGTTGGGAAAAGCGACCAGTACGTGGTCACTCTTAACGCTGGTGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCAATGAATACCACCTCCACTTCTCTTCCCATTTCAAACAGAACAATTAATACTCTAATTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACTAGACAGTACCATTTCCAGCGCCTCAATAGCACGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTACACATCAATTGTTCTAG

Coding sequence (CDS)

ATGAAAATTAACCCAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCATATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGCTGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCGATGCGTGAATATCTCCAGCCTGAAAGCTGGCTACCATTATTACCTGGGGTTGGGAAAAGCGACCAGTACGTGGTCACTCTTAACGCTGGTGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCAATGAATACCACCTCCACTTCTCTTCCCATTTCAAACAGAACAATTAATACTCTAATTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACTAGACAGTACCATTTCCAGCGCCTCAATAGCACGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTACACATCAATTGTTCTAG

Protein sequence

MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHLCLAHLKKVLLFSSMDKQLLDSMREYLQPESWLPLLPGVGKSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFVTRQYHFQRLNSTQFQLSVRHVLTELTHQLF
Homology
[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.9e-45
Identity = 102/202 (50.50%), Postives = 135/202 (66.83%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WM+HR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 417 MRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 476

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESWL-----PL--LPGVGKSDQYVVTL 120
           CLA L +V +F  MD+QLLD++ + LQP     ES++     P+  +  + +     +T 
Sbjct: 477 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 536

Query: 121 N-------------AGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 177
           N             AGDFCGEEL+ WA++  +S++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 537 NGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLK 596

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 5.4e-42
Identity = 98/201 (48.76%), Postives = 124/201 (61.69%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WM+HRMLPE+LR+ IRRY+QY+WQ  RGV+EE L+ NLPKDLRRDIK HL
Sbjct: 404 MRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHL 463

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQPESW------------------------LPLLP 120
           CL  LKKV LF  MD+QLLD++ + L+P  +                        +    
Sbjct: 464 CLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATT 523

Query: 121 GVGKSDQY-VVTLNAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
             G+S  +  V L A DFCGE+L+ WA++  S+S  PIS RT+  L EVEAFAL A +LK
Sbjct: 524 NGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLK 583

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-41
Identity = 98/201 (48.76%), Postives = 126/201 (62.69%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WM+HRMLP++LR+ IRRY+QYKWQ  RGV+EE L+ NLPKDLRRDIK H 
Sbjct: 405 MRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHF 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPGV------ 120
           CL  LKKV LF  MD+QLLD++ + L+P                E  L ++ G       
Sbjct: 465 CLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATT 524

Query: 121 --GKSDQY-VVTLNAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
             G++  +  V L   DFCGE+L+ WA++  S+S  PIS RT+  L EVEAFAL A++LK
Sbjct: 525 NGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLK 584

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 4.6e-41
Identity = 99/201 (49.25%), Postives = 126/201 (62.69%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RD+E WM HRMLP ELR+ +RRYDQYKW   RGV EE L+ NLPKDLRRDIK HL
Sbjct: 445 MRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHL 504

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESWL-------------------PLLP 120
           CLA +++V LF +MD++LLD++ E L+P     +S+L                    +  
Sbjct: 505 CLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 564

Query: 121 GVGKSDQYVVTL-NAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
             G+S  Y  +L   GDFCG+EL+ WA++  S S LP S RT+  L EVEAFAL A+ELK
Sbjct: 565 DGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELK 624

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-40
Identity = 98/201 (48.76%), Postives = 122/201 (60.70%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RD+E WM HRMLP ELR+ +RRYDQYKW   RGV EE L+ NLPKDLRRDIK HL
Sbjct: 444 MRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHL 503

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----ESWLPLLPGVGKSDQYVVT--------- 120
           CLA +++V LF +MD++LLD++ E L+P    ES   +  G   ++   +          
Sbjct: 504 CLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTT 563

Query: 121 ------------LNAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
                       L  GDFCGEEL+ WA++  S S LP S RT   L EVEAFAL A+ELK
Sbjct: 564 DGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELK 623

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A0A0L8L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119640 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 8.4e-66
Identity = 138/199 (69.35%), Postives = 150/199 (75.38%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLPEELR+ IRRYDQYKWQLNRGVKEEELISNLPKDL RDIK HL
Sbjct: 395 MRINRRDAEHWMAHRMLPEELRRRIRRYDQYKWQLNRGVKEEELISNLPKDLMRDIKQHL 454

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----------------------ESWLPLLPG 120
           CLAHLKKV LFSSMDKQLLDSM EYL+P                       +  L  L  
Sbjct: 455 CLAHLKKVPLFSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATLTN 514

Query: 121 VG-KSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFV 176
            G K + Y+ TL AGDFCGEELVQWAM+ +ST LPISNRTI TL EVEAFALK+NEL+ V
Sbjct: 515 CGWKDNLYLGTLKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALKSNELESV 574

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A0A0L356_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119630 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-64
Identity = 136/201 (67.66%), Postives = 151/201 (75.12%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLP+ELR  IRRYDQYKWQLNRGVKEEELISN PKDLRRDIK HL
Sbjct: 405 MRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNFPKDLRRDIKRHL 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPG-----VG 120
           CLAHLKKV LFSSMDKQLLD+M EYL+P                +  L ++ G     +G
Sbjct: 465 CLAHLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKMATIIG 524

Query: 121 ---KSDQYVVTLNAGDFCGEELVQWAMNTTS--TSLPISNRTINTLIEVEAFALKANELK 176
              K+D Y  TLNAGDFCGEELV WAM+ T+  +SLPIS RT+ TL EVEAFALKANELK
Sbjct: 525 CDWKNDLYSDTLNAGDFCGEELVHWAMDPTTNPSSLPISKRTVETLTEVEAFALKANELK 584

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A078GPA3_BRANA (BnaA02g10440D protein OS=Brassica napus GN=BnaA02g10440D PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 412 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 471

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 472 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 531

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 532 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 591

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: M4E1I2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 440 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 499

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 500 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 559

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 560 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 619

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A078E2Q2_BRANA (BnaC02g14560D protein OS=Brassica napus GN=BnaC02g14560D PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 412 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 471

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 472 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 531

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 532 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 591

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|778676918|ref|XP_004134306.2| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 1.2e-65
Identity = 138/199 (69.35%), Postives = 150/199 (75.38%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLPEELR+ IRRYDQYKWQLNRGVKEEELISNLPKDL RDIK HL
Sbjct: 395 MRINRRDAEHWMAHRMLPEELRRRIRRYDQYKWQLNRGVKEEELISNLPKDLMRDIKQHL 454

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----------------------ESWLPLLPG 120
           CLAHLKKV LFSSMDKQLLDSM EYL+P                       +  L  L  
Sbjct: 455 CLAHLKKVPLFSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATLTN 514

Query: 121 VG-KSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFV 176
            G K + Y+ TL AGDFCGEELVQWAM+ +ST LPISNRTI TL EVEAFALK+NEL+ V
Sbjct: 515 CGWKDNLYLGTLKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALKSNELESV 574

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|659074987|ref|XP_008437903.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.6e-65
Identity = 137/199 (68.84%), Postives = 149/199 (74.87%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLPEELRQ IRRYDQYKWQLNRGVKEEELI NLPKDLRRDIK HL
Sbjct: 395 MRINRRDAEHWMAHRMLPEELRQRIRRYDQYKWQLNRGVKEEELICNLPKDLRRDIKQHL 454

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPGV------ 120
           CLAHLKKV LFS MDKQLLDSM EYL+P                +  L ++ G       
Sbjct: 455 CLAHLKKVPLFSGMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATITT 514

Query: 121 --GKSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFV 176
              K+D Y+ TL AGDFCGEELVQWAM+ +ST LPISNRTI TL EVEAFAL  NEL+ V
Sbjct: 515 CGWKNDPYLGTLKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALNGNELESV 574

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|659074995|ref|XP_008437907.1| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 8.6e-64
Identity = 136/201 (67.66%), Postives = 151/201 (75.12%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLP+ELR  IRRYDQYKWQLNRGVKEEELISNLPKDLRRDIK HL
Sbjct: 405 MRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHL 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPG-----VG 120
           CLA LKKV LFSSMDKQLLD+M EYL+P                +  L ++ G     +G
Sbjct: 465 CLAQLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKLATIIG 524

Query: 121 ---KSDQYVVTLNAGDFCGEELVQWAMN--TTSTSLPISNRTINTLIEVEAFALKANELK 176
              K+D Y  TLNAGDFCGEELV WAM+  T ++SLPIS RT+ TL EVEAFALKANELK
Sbjct: 525 CDWKNDLYSATLNAGDFCGEELVHWAMDPTTNTSSLPISKRTVETLTEVEAFALKANELK 584

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|778676921|ref|XP_011650688.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 136/201 (67.66%), Postives = 151/201 (75.12%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLP+ELR  IRRYDQYKWQLNRGVKEEELISN PKDLRRDIK HL
Sbjct: 405 MRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNFPKDLRRDIKRHL 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPG-----VG 120
           CLAHLKKV LFSSMDKQLLD+M EYL+P                +  L ++ G     +G
Sbjct: 465 CLAHLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKMATIIG 524

Query: 121 ---KSDQYVVTLNAGDFCGEELVQWAMNTTS--TSLPISNRTINTLIEVEAFALKANELK 176
              K+D Y  TLNAGDFCGEELV WAM+ T+  +SLPIS RT+ TL EVEAFALKANELK
Sbjct: 525 CDWKNDLYSDTLNAGDFCGEELVHWAMDPTTNPSSLPISKRTVETLTEVEAFALKANELK 584

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|922428905|ref|XP_013620483.1| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Brassica oleracea var. oleracea])

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 412 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 471

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 472 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 531

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 532 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 591

The following BLAST results are available for this feature:
BLAST of Cla021164 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CNGC1_ARATH6.9e-4550.50Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1[more]
CNG10_ARATH5.4e-4248.76Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNG13_ARATH1.6e-4148.76Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNGC6_ARATH4.6e-4149.25Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 ... [more]
CNGC9_ARATH1.0e-4048.76Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 ... [more]
BLAST of Cla021164 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8L1_CUCSA8.4e-6669.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119640 PE=4 SV=1[more]
A0A0A0L356_CUCSA7.9e-6467.66Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119630 PE=4 SV=1[more]
A0A078GPA3_BRANA1.2e-4351.74BnaA02g10440D protein OS=Brassica napus GN=BnaA02g10440D PE=4 SV=1[more]
M4E1I2_BRARP1.2e-4351.74Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078E2Q2_BRANA1.2e-4351.74BnaC02g14560D protein OS=Brassica napus GN=BnaC02g14560D PE=4 SV=1[more]
BLAST of Cla021164 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778676918|ref|XP_004134306.2|1.2e-6569.35PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis sativus][more]
gi|659074987|ref|XP_008437903.1|1.6e-6568.84PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo][more]
gi|659074995|ref|XP_008437907.1|8.6e-6467.66PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis melo][more]
gi|778676921|ref|XP_011650688.1|1.1e-6367.66PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus][more]
gi|922428905|ref|XP_013620483.1|1.7e-4351.74PREDICTED: cyclic nucleotide-gated ion channel 1 [Brassica oleracea var. olerace... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR018490cNMP-bd-like
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006812 cation transport
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla021164Cla021164gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla021164Cla021164.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla021164.1.cds3Cla021164.1.cds3CDS
Cla021164.1.cds2Cla021164.1.cds2CDS
Cla021164.1.cds1Cla021164.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 101..161
score: 9.
IPR018490Cyclic nucleotide-binding-likeunknownSSF51206cAMP-binding domain-likecoord: 6..156
score: 2.49
NoneNo IPR availableGENE3DG3DSA:1.10.287.630coord: 8..61
score: 6.2
NoneNo IPR availablePANTHERPTHR10217VOLTAGE AND LIGAND GATED POTASSIUM CHANNELcoord: 1..175
score: 7.5
NoneNo IPR availablePANTHERPTHR10217:SF465CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATEDcoord: 1..175
score: 7.5