Cla021164 (gene) Watermelon (97103) v1

Overview
NameCla021164
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCyclic nucleotide-gated ion channel 1 (AHRD V1 ***- B6U0R1_MAIZE); contains Interpro domain(s) IPR018490 Cyclic nucleotide-binding-like
LocationChr5 : 872842 .. 873549 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATTAACCCAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCATATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGAGTTCTTTTCCTTCAACTTTGGCACATTCCACCTGTGAAATTCTCAACATTTGTTAACTCAGAATGCTTTAGGTGCTGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCGATGCGTGAATATCTCCAGCCTGTGTTATTCACAAAAAGAGGTTCATTCTGCAAGAGGTTGACCCAATTGATATGATGCTATTTATCATGAAAGGAAAGCTGGCTACCATTATTACCTGGGGTTGGGAAAAGCGACCAGTACGTGGTCACTCTTAACGCTGGTGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCAATGAATACCACCTCCACTTCTCTTCCCATTTCAAACAGAACAATTAATACTCTAATTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACTAGACAGTACCATTTCCAGCGCCTCAATAGCACGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTACACATCAATTGTTCTAG

mRNA sequence

ATGAAAATTAACCCAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCATATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGCTGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCGATGCGTGAATATCTCCAGCCTGAAAGCTGGCTACCATTATTACCTGGGGTTGGGAAAAGCGACCAGTACGTGGTCACTCTTAACGCTGGTGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCAATGAATACCACCTCCACTTCTCTTCCCATTTCAAACAGAACAATTAATACTCTAATTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACTAGACAGTACCATTTCCAGCGCCTCAATAGCACGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTACACATCAATTGTTCTAG

Coding sequence (CDS)

ATGAAAATTAACCCAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCATATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGCTGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCGATGCGTGAATATCTCCAGCCTGAAAGCTGGCTACCATTATTACCTGGGGTTGGGAAAAGCGACCAGTACGTGGTCACTCTTAACGCTGGTGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCAATGAATACCACCTCCACTTCTCTTCCCATTTCAAACAGAACAATTAATACTCTAATTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACTAGACAGTACCATTTCCAGCGCCTCAATAGCACGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTACACATCAATTGTTCTAG

Protein sequence

MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHLCLAHLKKVLLFSSMDKQLLDSMREYLQPESWLPLLPGVGKSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFVTRQYHFQRLNSTQFQLSVRHVLTELTHQLF
Homology
[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.9e-45
Identity = 102/202 (50.50%), Postives = 135/202 (66.83%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WM+HR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 417 MRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 476

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESWL-----PL--LPGVGKSDQYVVTL 120
           CLA L +V +F  MD+QLLD++ + LQP     ES++     P+  +  + +     +T 
Sbjct: 477 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 536

Query: 121 N-------------AGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 177
           N             AGDFCGEEL+ WA++  +S++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 537 NGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLK 596

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 5.4e-42
Identity = 98/201 (48.76%), Postives = 124/201 (61.69%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WM+HRMLPE+LR+ IRRY+QY+WQ  RGV+EE L+ NLPKDLRRDIK HL
Sbjct: 404 MRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHL 463

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQPESW------------------------LPLLP 120
           CL  LKKV LF  MD+QLLD++ + L+P  +                        +    
Sbjct: 464 CLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATT 523

Query: 121 GVGKSDQY-VVTLNAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
             G+S  +  V L A DFCGE+L+ WA++  S+S  PIS RT+  L EVEAFAL A +LK
Sbjct: 524 NGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLK 583

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-41
Identity = 98/201 (48.76%), Postives = 126/201 (62.69%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WM+HRMLP++LR+ IRRY+QYKWQ  RGV+EE L+ NLPKDLRRDIK H 
Sbjct: 405 MRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHF 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPGV------ 120
           CL  LKKV LF  MD+QLLD++ + L+P                E  L ++ G       
Sbjct: 465 CLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATT 524

Query: 121 --GKSDQY-VVTLNAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
             G++  +  V L   DFCGE+L+ WA++  S+S  PIS RT+  L EVEAFAL A++LK
Sbjct: 525 NGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLK 584

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 4.6e-41
Identity = 99/201 (49.25%), Postives = 126/201 (62.69%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RD+E WM HRMLP ELR+ +RRYDQYKW   RGV EE L+ NLPKDLRRDIK HL
Sbjct: 445 MRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHL 504

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESWL-------------------PLLP 120
           CLA +++V LF +MD++LLD++ E L+P     +S+L                    +  
Sbjct: 505 CLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 564

Query: 121 GVGKSDQYVVTL-NAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
             G+S  Y  +L   GDFCG+EL+ WA++  S S LP S RT+  L EVEAFAL A+ELK
Sbjct: 565 DGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELK 624

[Close]
BLAST of Cla021164 vs. Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-40
Identity = 98/201 (48.76%), Postives = 122/201 (60.70%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RD+E WM HRMLP ELR+ +RRYDQYKW   RGV EE L+ NLPKDLRRDIK HL
Sbjct: 444 MRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHL 503

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----ESWLPLLPGVGKSDQYVVT--------- 120
           CLA +++V LF +MD++LLD++ E L+P    ES   +  G   ++   +          
Sbjct: 504 CLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTT 563

Query: 121 ------------LNAGDFCGEELVQWAMNTTSTS-LPISNRTINTLIEVEAFALKANELK 176
                       L  GDFCGEEL+ WA++  S S LP S RT   L EVEAFAL A+ELK
Sbjct: 564 DGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELK 623

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A0A0L8L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119640 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 8.4e-66
Identity = 138/199 (69.35%), Postives = 150/199 (75.38%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLPEELR+ IRRYDQYKWQLNRGVKEEELISNLPKDL RDIK HL
Sbjct: 395 MRINRRDAEHWMAHRMLPEELRRRIRRYDQYKWQLNRGVKEEELISNLPKDLMRDIKQHL 454

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----------------------ESWLPLLPG 120
           CLAHLKKV LFSSMDKQLLDSM EYL+P                       +  L  L  
Sbjct: 455 CLAHLKKVPLFSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATLTN 514

Query: 121 VG-KSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFV 176
            G K + Y+ TL AGDFCGEELVQWAM+ +ST LPISNRTI TL EVEAFALK+NEL+ V
Sbjct: 515 CGWKDNLYLGTLKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALKSNELESV 574

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A0A0L356_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119630 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-64
Identity = 136/201 (67.66%), Postives = 151/201 (75.12%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLP+ELR  IRRYDQYKWQLNRGVKEEELISN PKDLRRDIK HL
Sbjct: 405 MRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNFPKDLRRDIKRHL 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPG-----VG 120
           CLAHLKKV LFSSMDKQLLD+M EYL+P                +  L ++ G     +G
Sbjct: 465 CLAHLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKMATIIG 524

Query: 121 ---KSDQYVVTLNAGDFCGEELVQWAMNTTS--TSLPISNRTINTLIEVEAFALKANELK 176
              K+D Y  TLNAGDFCGEELV WAM+ T+  +SLPIS RT+ TL EVEAFALKANELK
Sbjct: 525 CDWKNDLYSDTLNAGDFCGEELVHWAMDPTTNPSSLPISKRTVETLTEVEAFALKANELK 584

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A078GPA3_BRANA (BnaA02g10440D protein OS=Brassica napus GN=BnaA02g10440D PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 412 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 471

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 472 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 531

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 532 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 591

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: M4E1I2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 440 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 499

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 500 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 559

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 560 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 619

[Close]
BLAST of Cla021164 vs. TrEMBL
Match: A0A078E2Q2_BRANA (BnaC02g14560D protein OS=Brassica napus GN=BnaC02g14560D PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 412 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 471

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 472 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 531

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 532 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 591

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|778676918|ref|XP_004134306.2| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 1.2e-65
Identity = 138/199 (69.35%), Postives = 150/199 (75.38%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLPEELR+ IRRYDQYKWQLNRGVKEEELISNLPKDL RDIK HL
Sbjct: 395 MRINRRDAEHWMAHRMLPEELRRRIRRYDQYKWQLNRGVKEEELISNLPKDLMRDIKQHL 454

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----------------------ESWLPLLPG 120
           CLAHLKKV LFSSMDKQLLDSM EYL+P                       +  L  L  
Sbjct: 455 CLAHLKKVPLFSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATLTN 514

Query: 121 VG-KSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFV 176
            G K + Y+ TL AGDFCGEELVQWAM+ +ST LPISNRTI TL EVEAFALK+NEL+ V
Sbjct: 515 CGWKDNLYLGTLKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALKSNELESV 574

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|659074987|ref|XP_008437903.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.6e-65
Identity = 137/199 (68.84%), Postives = 149/199 (74.87%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLPEELRQ IRRYDQYKWQLNRGVKEEELI NLPKDLRRDIK HL
Sbjct: 395 MRINRRDAEHWMAHRMLPEELRQRIRRYDQYKWQLNRGVKEEELICNLPKDLRRDIKQHL 454

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPGV------ 120
           CLAHLKKV LFS MDKQLLDSM EYL+P                +  L ++ G       
Sbjct: 455 CLAHLKKVPLFSGMDKQLLDSMCEYLKPVLFTKKSFILQEGDTIDMMLFIMKGELATITT 514

Query: 121 --GKSDQYVVTLNAGDFCGEELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFV 176
              K+D Y+ TL AGDFCGEELVQWAM+ +ST LPISNRTI TL EVEAFAL  NEL+ V
Sbjct: 515 CGWKNDPYLGTLKAGDFCGEELVQWAMDPSSTCLPISNRTIKTLTEVEAFALNGNELESV 574

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|659074995|ref|XP_008437907.1| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 8.6e-64
Identity = 136/201 (67.66%), Postives = 151/201 (75.12%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLP+ELR  IRRYDQYKWQLNRGVKEEELISNLPKDLRRDIK HL
Sbjct: 405 MRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHL 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPG-----VG 120
           CLA LKKV LFSSMDKQLLD+M EYL+P                +  L ++ G     +G
Sbjct: 465 CLAQLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKLATIIG 524

Query: 121 ---KSDQYVVTLNAGDFCGEELVQWAMN--TTSTSLPISNRTINTLIEVEAFALKANELK 176
              K+D Y  TLNAGDFCGEELV WAM+  T ++SLPIS RT+ TL EVEAFALKANELK
Sbjct: 525 CDWKNDLYSATLNAGDFCGEELVHWAMDPTTNTSSLPISKRTVETLTEVEAFALKANELK 584

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|778676921|ref|XP_011650688.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 136/201 (67.66%), Postives = 151/201 (75.12%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M+IN RDAEHWMAHRMLP+ELR  IRRYDQYKWQLNRGVKEEELISN PKDLRRDIK HL
Sbjct: 405 MRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNFPKDLRRDIKRHL 464

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP----------------ESWLPLLPG-----VG 120
           CLAHLKKV LFSSMDKQLLD+M EYL+P                +  L ++ G     +G
Sbjct: 465 CLAHLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKMATIIG 524

Query: 121 ---KSDQYVVTLNAGDFCGEELVQWAMNTTS--TSLPISNRTINTLIEVEAFALKANELK 176
              K+D Y  TLNAGDFCGEELV WAM+ T+  +SLPIS RT+ TL EVEAFALKANELK
Sbjct: 525 CDWKNDLYSDTLNAGDFCGEELVHWAMDPTTNPSSLPISKRTVETLTEVEAFALKANELK 584

[Close]
BLAST of Cla021164 vs. NCBI nr
Match: gi|922428905|ref|XP_013620483.1| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Brassica oleracea var. oleracea])

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-43
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 1 

Query: 1   MKINPRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHL 60
           M++  RDAE WMAHR+LPE LR+ IRRY+QYKWQ  RGV EE L+SNLPKDLRRDIK HL
Sbjct: 412 MRVKRRDAEQWMAHRLLPESLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 471

Query: 61  CLAHLKKVLLFSSMDKQLLDSMREYLQP-----ESW-------------------LPLLP 120
           CLA L +V +F  MD+QLLD++ + LQP     ES+                   L +  
Sbjct: 472 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTT 531

Query: 121 GVGKSDQYVVT-LNAGDFCGEELVQWAMNT-TSTSLPISNRTINTLIEVEAFALKANELK 176
             G++  +    L AGDFCGEEL+ WA++  TS++LPIS RT+  L+EVEAFALKA++LK
Sbjct: 532 NGGRTGFFNSEHLGAGDFCGEELLTWALDPHTSSNLPISTRTVRALVEVEAFALKADDLK 591

The following BLAST results are available for this feature:
BLAST of Cla021164 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CNGC1_ARATH6.9e-4550.50Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1[more]
CNG10_ARATH5.4e-4248.76Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNG13_ARATH1.6e-4148.76Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNGC6_ARATH4.6e-4149.25Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 ... [more]
CNGC9_ARATH1.0e-4048.76Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 ... [more]
BLAST of Cla021164 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8L1_CUCSA8.4e-6669.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119640 PE=4 SV=1[more]
A0A0A0L356_CUCSA7.9e-6467.66Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119630 PE=4 SV=1[more]
A0A078GPA3_BRANA1.2e-4351.74BnaA02g10440D protein OS=Brassica napus GN=BnaA02g10440D PE=4 SV=1[more]
M4E1I2_BRARP1.2e-4351.74Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078E2Q2_BRANA1.2e-4351.74BnaC02g14560D protein OS=Brassica napus GN=BnaC02g14560D PE=4 SV=1[more]
BLAST of Cla021164 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778676918|ref|XP_004134306.2|1.2e-6569.35PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis sativus][more]
gi|659074987|ref|XP_008437903.1|1.6e-6568.84PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo][more]
gi|659074995|ref|XP_008437907.1|8.6e-6467.66PREDICTED: cyclic nucleotide-gated ion channel 1 [Cucumis melo][more]
gi|778676921|ref|XP_011650688.1|1.1e-6367.66PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus][more]
gi|922428905|ref|XP_013620483.1|1.7e-4351.74PREDICTED: cyclic nucleotide-gated ion channel 1 [Brassica oleracea var. olerace... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR018490cNMP-bd-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006812 cation transport
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005216 ion channel activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021164Cla021164.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 101..161
score: 9.
IPR018490Cyclic nucleotide-binding-likeunknownSSF51206cAMP-binding domain-likecoord: 6..156
score: 2.49
NoneNo IPR availableGENE3DG3DSA:1.10.287.630coord: 8..61
score: 6.2
NoneNo IPR availablePANTHERPTHR10217VOLTAGE AND LIGAND GATED POTASSIUM CHANNELcoord: 1..175
score: 7.5
NoneNo IPR availablePANTHERPTHR10217:SF465CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATEDcoord: 1..175
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla021164ClCG05G000880Watermelon (Charleston Gray)wcgwmB286
Cla021164Lsi09G000290Bottle gourd (USVL1VR-Ls)lsiwmB018
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla021164Silver-seed gourdcarwmB0122
Cla021164Silver-seed gourdcarwmB0992
Cla021164Cucumber (Chinese Long) v3cucwmB239
Cla021164Cucumber (Chinese Long) v3cucwmB338
Cla021164Cucumber (Chinese Long) v3cucwmB423
Cla021164Watermelon (97103) v2wmwmbB187
Cla021164Watermelon (97103) v2wmwmbB206
Cla021164Watermelon (97103) v2wmwmbB212
Cla021164Wax gourdwgowmB071
Cla021164Wax gourdwgowmB212
Cla021164Wax gourdwgowmB221
Cla021164Watermelon (97103) v1wmwmB118
Cla021164Watermelon (97103) v1wmwmB119
Cla021164Cucumber (Gy14) v1cgywmB149
Cla021164Cucumber (Gy14) v1cgywmB398
Cla021164Cucumber (Gy14) v1cgywmB479
Cla021164Cucurbita maxima (Rimu)cmawmB004
Cla021164Cucurbita maxima (Rimu)cmawmB242
Cla021164Cucurbita maxima (Rimu)cmawmB799
Cla021164Cucurbita maxima (Rimu)cmawmB801
Cla021164Cucurbita moschata (Rifu)cmowmB231
Cla021164Cucurbita moschata (Rifu)cmowmB370
Cla021164Cucurbita moschata (Rifu)cmowmB793
Cla021164Melon (DHL92) v3.5.1mewmB022
Cla021164Melon (DHL92) v3.5.1mewmB461
Cla021164Melon (DHL92) v3.5.1mewmB470
Cla021164Melon (DHL92) v3.5.1mewmB526
Cla021164Watermelon (Charleston Gray)wcgwmB130
Cla021164Watermelon (Charleston Gray)wcgwmB291
Cla021164Cucumber (Chinese Long) v2cuwmB325
Cla021164Cucumber (Chinese Long) v2cuwmB233
Cla021164Cucumber (Chinese Long) v2cuwmB397
Cla021164Cucurbita pepo (Zucchini)cpewmB613
Cla021164Cucurbita pepo (Zucchini)cpewmB704
Cla021164Cucurbita pepo (Zucchini)cpewmB845
Cla021164Bottle gourd (USVL1VR-Ls)lsiwmB365
Cla021164Bottle gourd (USVL1VR-Ls)lsiwmB372
Cla021164Cucumber (Gy14) v2cgybwmB217
Cla021164Cucumber (Gy14) v2cgybwmB300
Cla021164Cucumber (Gy14) v2cgybwmB373
Cla021164Melon (DHL92) v3.6.1medwmB018
Cla021164Melon (DHL92) v3.6.1medwmB447
Cla021164Melon (DHL92) v3.6.1medwmB511