Cla020904.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020904
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	CG2446-PA (Fragment) (AHRD V1 **-- A9YGJ8_DROSI)
Location	Chr5 : 25734851 .. 25736261 (-)
Sequence length	663

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAATTCTCAAACTCTGCTCCAAGTCTCTGGAGAGAAGCTCTCTCTTCTTATCCATCCAAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTCCCTCTTCTTCTCCACGAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGAGGAAAATGGAGGTACCCGGTGCTCAGTGCTCTCTATCTCTGTCTTTTTATTTAGGTTTCAACGATTATTTATCAATTTCATGTACAATGACTAAACGAATTTCAGGCCGCGTCTCTTAGACTTCGTTTCGTCATTGGACGAATCCCTCGTCAAATTGGCTTCTCAAAAGGCCTTTCAATGCCTTCCTGATATTTCTAAAGCCGTGTCTGAGCTTACGCCACTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCAGTTCTGGCTGCTTACGCGCCGGATATTGCGCCTTTCATGTCCGACGAGGTGAAATCAGGATAAATGTTGATGCAATTAGATCATCAGTAGCCATTGATTTCTGCATTTTAAGTTTTGAATATTTGTTACGCTTAGATTTCTAACTTCTGATGGTGAAGAAGTAGGCTATGGAGGCGGCTCTAGGCAACTCCAAGGATTATTCGTTGAAGCAATACTTATCGTTCGCAAAGAAGTTGCAAGATAAAGCCAAGGTCTGTTAGCTAATTTCTCCAATTATGTCGCTTGTTTTGTGTATTATGTGAGGAAATTAAGTTCGTTTCTAGAATCCTACAAATTGGGACGCATTTCTGTTTCCATCCTTCAGGCATCACTTTCTTTCTTTCTTTCTTTCTTCACATTGACATTGCTCTGCTTTGTTTTGACTTTATGATGAACCTAGCCCTGAAAGGATTTGTTCCTCAAACCCATGATACGAGCTTAGCATTCTAAAATTGAAGTGTTGTTTCAAACTGAGTTTCCAAAACCTAGGCTTGTGTAACGTGTTTTATTTGTGAATTTATAGTTTGTAATTTGTAAATGTCTGTATTTATCATCAATTCTTGATTTGTATGTATGGGTTTTGTTTATTTTGTGAGATTAACAACCTTGGAATGTGGAATAATAAAGGCACGAGCTAAAACACAACCTTGATTTCTGTATCTTAGACTACAAGCTTAACTTAAAGTCAAACATTCTAATTGTTCAATGGAAGCGGCTGCCAAATATTATTGTTCTTTATGGAATTTGCAGGAATTAAGCTCAGAAGGACAAAATTTCACACCATCGGACGTAGAGAGGGCTTTGTGGAGTATAGCTATAGGGGAAAAATTCAAAGGTTCACAATCAGAATTAGAGCCCAAGAAGGAAGGCAAAACTGGGACCAAAAGAAAGAGAAAAACATCCAAGTGA

mRNA sequence

ATGATGGAATTCTCAAACTCTGCTCCAAGTCTCTGGAGAGAAGCTCTCTCTTCTTATCCATCCAAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTCCCTCTTCTTCTCCACGAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGAGGAAAATGGAGGCCGCGTCTCTTAGACTTCGTTTCGTCATTGGACGAATCCCTCGTCAAATTGGCTTCTCAAAAGGCCTTTCAATGCCTTCCTGATATTTCTAAAGCCGTGTCTGAGCTTACGCCACTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCAGTTCTGGCTGCTTACGCGCCGGATATTGCGCCTTTCATGTCCGACGAGGCTATGGAGGCGGCTCTAGGCAACTCCAAGGATTATTCGTTGAAGCAATACTTATCGTTCGCAAAGAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAAATTTCACACCATCGGACGTAGAGAGGGCTTTGTGGAGTATAGCTATAGGGGAAAAATTCAAAGGTTCACAATCAGAATTAGAGCCCAAGAAGGAAGGCAAAACTGGGACCAAAAGAAAGAGAAAAACATCCAAGTGA

Coding sequence (CDS)

ATGATGGAATTCTCAAACTCTGCTCCAAGTCTCTGGAGAGAAGCTCTCTCTTCTTATCCATCCAAAATCGAAGCCCTAGGCAAGCCCAATTTGGTTTCTCTCGATGATTTTTACCGAAACGAACTCCCTCTTCTTCTCCACGAGCGAAACCCTAGCCCTTACATCACTACTTCTGAGCTCTCAAAACTCATGCAATGGAAGCTCACTCGAGGAAAATGGAGGCCGCGTCTCTTAGACTTCGTTTCGTCATTGGACGAATCCCTCGTCAAATTGGCTTCTCAAAAGGCCTTTCAATGCCTTCCTGATATTTCTAAAGCCGTGTCTGAGCTTACGCCACTCAAAGGCGTTGGTCCGGCCACTGCCTCGGCAGTTCTGGCTGCTTACGCGCCGGATATTGCGCCTTTCATGTCCGACGAGGCTATGGAGGCGGCTCTAGGCAACTCCAAGGATTATTCGTTGAAGCAATACTTATCGTTCGCAAAGAAGTTGCAAGATAAAGCCAAGGAATTAAGCTCAGAAGGACAAAATTTCACACCATCGGACGTAGAGAGGGCTTTGTGGAGTATAGCTATAGGGGAAAAATTCAAAGGTTCACAATCAGAATTAGAGCCCAAGAAGGAAGGCAAAACTGGGACCAAAAGAAAGAGAAAAACATCCAAGTGA

Protein sequence

MMEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELSKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATASAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSDVERALWSIAIGEKFKGSQSELEPKKEGKTGTKRKRKTSK

Homology

[Close]

BLAST of Cla020904 vs. TrEMBL
Match: A0A0A0L3W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645280 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 3.7e-105
Identity = 196/220 (89.09%), Postives = 207/220 (94.09%), Query Frame = 1


Query: 1   MMEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSEL 60
           MMEFS S P+LWREALS+Y S+IEALGKPNLVSLDDFYRNELPL+LH+RNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPS 180
           ASAVLAAYAPD+APFMSDEAMEAALGNSKDYSLKQYL FA KL+ KAKELS EG+ FTPS
Sbjct: 121 ASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLFANKLEQKAKELSLEGEIFTPS 180

Query: 181 DVERALWSIAIGEKFKGSQSELEPKKEGKTGTKRKRKTSK 221
           DVERALWS AIGEK KGS+S+L+P   GKTGTKRKRKTSK
Sbjct: 181 DVERALWSRAIGEKLKGSKSQLDPNNGGKTGTKRKRKTSK 220

[Close]

BLAST of Cla020904 vs. TrEMBL
Match: M5XSQ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011235mg PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 7.1e-88
Identity = 168/217 (77.42%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           MEF  SAPSLWREALSSY S+I++L KPNLVSLDDFYRN LP LLH+RNPSP+ITTSELS
Sbjct: 1   MEFECSAPSLWREALSSYSSRIQSLNKPNLVSLDDFYRNALPSLLHQRNPSPFITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
            LM+WKLTRGKWRPRLLDFVS+LDE++VK ASQKAFQ LPDISKA+SELT LKG+GPATA
Sbjct: 61  DLMRWKLTRGKWRPRLLDFVSALDEAVVKSASQKAFQALPDISKAISELTVLKGLGPATA 120

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SAVLAAYAPD+APFMSDEAM AALGNSKDY+LKQYL F  KLQ+KAKEL++EG+ FTPSD
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYLLFVNKLQEKAKELTAEGETFTPSD 180

Query: 182 VERALWSIAIGEKFKGSQSELEPKKE-GKTGTKRKRK 218
           VERALWS A+G K   SQS+ + K +  K   KRKRK
Sbjct: 181 VERALWSGAVGAKLPSSQSDPDLKTDKSKNPNKRKRK 217

[Close]

BLAST of Cla020904 vs. TrEMBL
Match: A0A061FEA1_THECC (Gb:AAF48080.1 OS=Theobroma cacao GN=TCM_034642 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.5e-85
Identity = 162/214 (75.70%), Postives = 186/214 (86.92%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           + F  +  S+W+EA+SSY S+IE+L KPNLVSLD+FYRNELP LLH+RNP+P+ITTSELS
Sbjct: 3   LHFECTDLSIWKEAISSYKSRIESLDKPNLVSLDEFYRNELPPLLHQRNPNPFITTSELS 62

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           +LMQWKLTRGKWRPRLLDFVSSLD+SLVK ASQKAFQ LPDISKAVSELT LKGVGPATA
Sbjct: 63  RLMQWKLTRGKWRPRLLDFVSSLDDSLVKSASQKAFQSLPDISKAVSELTVLKGVGPATA 122

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SAVLAAYAP+ APFMSDEAMEAALGNSKDYSLKQYL F  K+Q K+KELSS+G +FTPSD
Sbjct: 123 SAVLAAYAPETAPFMSDEAMEAALGNSKDYSLKQYLLFVDKIQSKSKELSSKGDSFTPSD 182

Query: 182 VERALWSIAIGEKFKGSQSELEPKKEGKTGTKRK 216
           VERALWS A+G K + SQ+ L+ K +G    KR+
Sbjct: 183 VERALWSSAVGIKLQSSQAVLDNKMKGSNKRKRR 216

[Close]

BLAST of Cla020904 vs. TrEMBL
Match: M5W816_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022189mg PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.8e-84
Identity = 160/206 (77.67%), Postives = 181/206 (87.86%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           MEF  SAPSLWREALSSY S+I++L KPNLVSLDDFYRN LP LLH+ NPSP+ITTSELS
Sbjct: 1   MEFECSAPSLWREALSSYSSRIQSLNKPNLVSLDDFYRNALPSLLHQGNPSPFITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
            LM+WKLTRGKWRPRLLDFVS+LDE++VK ASQKAFQ LPDISKA+SELT LKG+GPATA
Sbjct: 61  DLMRWKLTRGKWRPRLLDFVSALDEAVVKSASQKAFQALPDISKAISELTVLKGLGPATA 120

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SAVLAAYAPD+APFMSDEAM AALGNSKDY+LKQYL F  KLQ+KAKEL++E + FTPSD
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYLLFVNKLQEKAKELTAEWETFTPSD 180

Query: 182 VERALWSIAIGEKFKGSQSELEPKKE 208
           VERALWS A+G K   SQS+ + K +
Sbjct: 181 VERALWSGAVGAKLPSSQSDPDLKTD 206

[Close]

BLAST of Cla020904 vs. TrEMBL
Match: F6H169_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08560 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.0e-82
Identity = 161/216 (74.54%), Postives = 181/216 (83.80%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           M+F     S+W+EALSSY ++I +L KP LVSLDDFY N+LP L+ +RNP+PYITTSELS
Sbjct: 1   MDFQCLNRSVWKEALSSYSARIVSLNKPQLVSLDDFYCNQLPALIRQRNPNPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDE+LVK ASQKAFQ LPDISKA+SELT LKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDEALVKSASQKAFQSLPDISKAISELTVLKGVGPATA 120

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SA+LAAYAPD+APFMSDEAM AALGNSKDY+LKQYL FA KLQ+KA+ELS EG ++TPSD
Sbjct: 121 SALLAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYLVFADKLQNKARELSVEGDSYTPSD 180

Query: 182 VERALWSIAIGEKFKGSQSELEPKKEGKTGTKRKRK 218
           VERALWS A+G K   S     P  E K  TKRKRK
Sbjct: 181 VERALWSSAVGTKLLDSL----PNSEPKVNTKRKRK 212

[Close]

BLAST of Cla020904 vs. NCBI nr
Match: gi|659103680|ref|XP_008452684.1| (PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo])

HSP 1 Score: 392.1 bits (1006), Expect = 6.3e-106
Identity = 196/219 (89.50%), Postives = 207/219 (94.52%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           M+FSNS P+LWREALSSY S+IEALGKPNLVSLDDFYRNELPL+LH+R PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SA+LAAYAPD+APFMSDEAMEAALGNSKDYSLKQYL FA KLQ+KAKELS EG+ FTPSD
Sbjct: 121 SAILAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLFANKLQEKAKELSLEGETFTPSD 180

Query: 182 VERALWSIAIGEKFKGSQSELEPKKEGKTGTKRKRKTSK 221
           VERALWS AIGEK KGSQS+L+P   GKTGTKRKRKTSK
Sbjct: 181 VERALWSRAIGEKLKGSQSQLDPNNGGKTGTKRKRKTSK 219

[Close]

BLAST of Cla020904 vs. NCBI nr
Match: gi|449447089|ref|XP_004141302.1| (PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus])

HSP 1 Score: 389.0 bits (998), Expect = 5.4e-105
Identity = 196/220 (89.09%), Postives = 207/220 (94.09%), Query Frame = 1


Query: 1   MMEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSEL 60
           MMEFS S P+LWREALS+Y S+IEALGKPNLVSLDDFYRNELPL+LH+RNPSPYITTSEL
Sbjct: 1   MMEFSISDPTLWREALSTYSSQIEALGKPNLVSLDDFYRNELPLILHKRNPSPYITTSEL 60

Query: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120
           SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT
Sbjct: 61  SKLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPAT 120

Query: 121 ASAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPS 180
           ASAVLAAYAPD+APFMSDEAMEAALGNSKDYSLKQYL FA KL+ KAKELS EG+ FTPS
Sbjct: 121 ASAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLFANKLEQKAKELSLEGEIFTPS 180

Query: 181 DVERALWSIAIGEKFKGSQSELEPKKEGKTGTKRKRKTSK 221
           DVERALWS AIGEK KGS+S+L+P   GKTGTKRKRKTSK
Sbjct: 181 DVERALWSRAIGEKLKGSKSQLDPNNGGKTGTKRKRKTSK 220

[Close]

BLAST of Cla020904 vs. NCBI nr
Match: gi|596187364|ref|XP_007223399.1| (hypothetical protein PRUPE_ppa011235mg [Prunus persica])

HSP 1 Score: 331.6 bits (849), Expect = 1.0e-87
Identity = 168/217 (77.42%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           MEF  SAPSLWREALSSY S+I++L KPNLVSLDDFYRN LP LLH+RNPSP+ITTSELS
Sbjct: 1   MEFECSAPSLWREALSSYSSRIQSLNKPNLVSLDDFYRNALPSLLHQRNPSPFITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
            LM+WKLTRGKWRPRLLDFVS+LDE++VK ASQKAFQ LPDISKA+SELT LKG+GPATA
Sbjct: 61  DLMRWKLTRGKWRPRLLDFVSALDEAVVKSASQKAFQALPDISKAISELTVLKGLGPATA 120

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SAVLAAYAPD+APFMSDEAM AALGNSKDY+LKQYL F  KLQ+KAKEL++EG+ FTPSD
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYLLFVNKLQEKAKELTAEGETFTPSD 180

Query: 182 VERALWSIAIGEKFKGSQSELEPKKE-GKTGTKRKRK 218
           VERALWS A+G K   SQS+ + K +  K   KRKRK
Sbjct: 181 VERALWSGAVGAKLPSSQSDPDLKTDKSKNPNKRKRK 217

[Close]

BLAST of Cla020904 vs. NCBI nr
Match: gi|645227220|ref|XP_008220412.1| (PREDICTED: uncharacterized protein LOC103320504 [Prunus mume])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 167/217 (76.96%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           MEF  S  SLWREALSSY S+I++L KPNLVSLDDFYR +LP LLH+RNPSP+ITTSELS
Sbjct: 1   MEFECSTLSLWREALSSYSSRIQSLNKPNLVSLDDFYRTKLPSLLHQRNPSPFITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
            LM+WKLTRGKWRPRLLDFVS+LDE++VK ASQKAFQ LPDISKA+SELT LKGVGPATA
Sbjct: 61  DLMRWKLTRGKWRPRLLDFVSALDEAVVKSASQKAFQALPDISKAISELTVLKGVGPATA 120

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SAVLAAYAPD+APFMSDEAM AALGNSKDY+LKQYL FA KLQ+KAKEL++EG++FTPSD
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYLLFANKLQEKAKELTAEGESFTPSD 180

Query: 182 VERALWSIAIGEKFKGSQSELEPKKE-GKTGTKRKRK 218
           VERALWS A+G K   SQS+ + K +  K   KRKRK
Sbjct: 181 VERALWSGAVGAKLPSSQSDPDLKTDKSKNPNKRKRK 217

[Close]

BLAST of Cla020904 vs. NCBI nr
Match: gi|659103683|ref|XP_008452685.1| (PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 170/219 (77.63%), Postives = 180/219 (82.19%), Query Frame = 1


Query: 2   MEFSNSAPSLWREALSSYPSKIEALGKPNLVSLDDFYRNELPLLLHERNPSPYITTSELS 61
           M+FSNS P+LWREALSSY S+IEALGKPNLVSLDDFYRNELPL+LH+R PSPYITTSELS
Sbjct: 1   MKFSNSDPTLWREALSSYSSQIEALGKPNLVSLDDFYRNELPLILHKRKPSPYITTSELS 60

Query: 62  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 121
           KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA
Sbjct: 61  KLMQWKLTRGKWRPRLLDFVSSLDESLVKLASQKAFQCLPDISKAVSELTPLKGVGPATA 120

Query: 122 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSFAKKLQDKAKELSSEGQNFTPSD 181
           SA+LAAYAPD+APFMSDE                             ELS EG+ FTPSD
Sbjct: 121 SAILAAYAPDVAPFMSDE-----------------------------ELSLEGETFTPSD 180

Query: 182 VERALWSIAIGEKFKGSQSELEPKKEGKTGTKRKRKTSK 221
           VERALWS AIGEK KGSQS+L+P   GKTGTKRKRKTSK
Sbjct: 181 VERALWSRAIGEKLKGSQSQLDPNNGGKTGTKRKRKTSK 190

The following BLAST results are available for this feature:

BLAST of Cla020904 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W6_CUCSA	3.7e-105	89.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645280 PE=4 SV=1	[more]
M5XSQ2_PRUPE	7.1e-88	77.42	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011235mg PE=4 SV=1	[more]
A0A061FEA1_THECC	2.5e-85	75.70	Gb:AAF48080.1 OS=Theobroma cacao GN=TCM_034642 PE=4 SV=1	[more]
M5W816_PRUPE	2.8e-84	77.67	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022189mg PE=4 S...	[more]
F6H169_VITVI	2.0e-82	74.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08560 PE=4 SV=...	[more]

BLAST of Cla020904 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103680\|ref\|XP_008452684.1\|	6.3e-106	89.50	PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo]	[more]
gi\|449447089\|ref\|XP_004141302.1\|	5.4e-105	89.09	PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus]	[more]
gi\|596187364\|ref\|XP_007223399.1\|	1.0e-87	77.42	hypothetical protein PRUPE_ppa011235mg [Prunus persica]	[more]
gi\|645227220\|ref\|XP_008220412.1\|	1.5e-86	76.96	PREDICTED: uncharacterized protein LOC103320504 [Prunus mume]	[more]
gi\|659103683\|ref\|XP_008452685.1\|	1.5e-86	77.63	PREDICTED: uncharacterized protein LOC103493629 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla020904	Cla020904	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla020904	Cla020904.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla020904.1.cds4	Cla020904.1.cds4	CDS
Cla020904.1.cds3	Cla020904.1.cds3	CDS
Cla020904.1.cds2	Cla020904.1.cds2	CDS
Cla020904.1.cds1	Cla020904.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 153..173 scor
None	No IPR available	PANTHER	PTHR21521	UNCHARACTERIZED	coord: 1..195 score: 9.2
None	No IPR available	PANTHER	PTHR21521:SF0	AMUN, ISOFORM A	coord: 1..195 score: 9.2