Cla020131.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020131
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	50S ribosomal protein L25 (AHRD V1 ***- D1AT99_ANACI); contains Interpro domain(s) IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
Location	Chr2 : 23360748 .. 23363641 (+)
Sequence length	762

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGTGGTGGCGCTCCGCCGGAAGGAACCTTAGGTTGGCGGCGTTTTCAAGTGCTAGATCAGAATCGTGTCCATTTTCATCATCTCGAGCTGCTTCATACCATACGATCCAAGCAATACCAAGAGAGTGCAGCGGCAGCCGAATTTCGAGCAGAGATAGAGCTCAGGGAAGAATCCCCGCCGTCGTTTTCAGTCAAAAAATCCTTGAGAAAAACTCCGTCCACCGATCGCCGTCGCGGAAGCATCTGCTCACTACAGAGCAAAAGCAAATCCACTCCATTCTCAAATCCGTTGAGCTCCCTTTCTTTTGCTCCACTAGGTTCAAGCTCCAGATCCGCGCTGGTTCCGGATCTTCAGTCCTTCTTGAATCAGGATCCATCCTTCCAGTCAAAGTAAACCATTCACTTATCTCTACCTGTTTGTTTGTGTTTAATTCAACCTGATTTTTCTTGCATTTTCATGTTATGGAGTAACTGCTTGAGAATTTTCAGATTCATAGGGATGAAGAGACCGGGAAGATTTTGAATATTGTATTTGTATGGGCTGATGAAGGCTCGGAGTTGAAGGTAGATGTGCCAATTGTTTTTAAAGGCGAAGAGACTTGCCCTGGTCTTCAGAAAGGTAACCATGGAAGAAAGGTTTCTTTAATTCCCAAGCTCATGTTAGTCAAATTCTCGGTTTTGTGAATGTGGAATTAATTGGAGCGATTGCAAGATATTGGGGAATTAGTTTATTGAATCCAGAAAATATACTTAGCCATTTATGCAATTTTATTATTGCCAAGATGACACGAAGTTTTATCTTAAGGGAAGTATAAAATCTAGTTTCAATTGGTTTCACAATTTGGTCCCATCACTTTGGCTTTTCCTTACTATACGAAATGTGCACACCCACTATAGAGCGCCACAAGAAATTTCCCAAGACAAGATATCATAAACCCAAAAATAACTATAAGAAAGCTTTCCGATGAAAATTAATTCTAGTAGAAGACTAATTCTTAAATTCGTTGGAAAAAAATACACCAAGAAACCGTGCAATGTTTAATCATCCCAAATCTTTTCCTCCTGGATTGCTCGAAGATTCTATGTTTAATCACCCCAAAGTAAGTAGCGTTAAACACTTGTCAATCCACGTAACTTTACCTTTCTTAATTCAGTCAATGCCTCAGAGTGACATAAAAATGTTGTTTTTAGCTATTAAATCATATGCTTAAGCAATCTGAAGACTTAAGATACTCTCTTCACAAAACTGAGCACTTATTGAGAGAGAGAGAGAGAAAAAAGCATCATTCAAAAAGAACCAAGGGCTCCTATCAAGCAAGATGAAACCTAACGGATAATTACAAAAGTCCATATGCACCTAAGTCTAGAGGGAGGTATGCAATTGGAACCTAACAAGGAACCAAACTTTTTCCTTAGACCGCCCTGCACCTGTGGAATCTTTTCATAAAGGTGAACCAGACCATTATACTGATTTTTCTAGAACATGGGACTGATGCAAATGAAGAAATGGAGTTAAGGAAAGCTCAATTTATAATGTCACTCAGGGGATTTTTGGGCCAAGAAGTTGGGAAGTAGGGAGTTGTGAACTCCACTCTTTGTTTGGTCTAAGGAGTTCATGGATCCCACTACTAAAAATTGTCAATTTTACACCTTATTAACTCCTTACGTTGTGGGCTCCCGGAGTTCACAACTTCCTAGATGCCCCTGTAGTAGCTGTTGATTAGCTAAGAAGTAAGAAGTAGCAGCACACTTTTTTTCTTCAGAGAACTATCTGATACTTTCTTGAATATACAATTAACTGAAAATCCAGGCCTCTAACAAACCTTACCTACATACTTTCATTGTCGCTCAAGGCCTCCCCCCCCCCCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTACCAACCCTTCCCTCCTACCTTCATTGGCGCCCAAGGCCCCCCCCCCCCCCACCTACGTTCATACATGGTACACTTTAGTTATTTGGGGCCTATCAGGGTAACATGTAATGGATACCTATTCTTAAGGTTGCAATTTTGTTGCATTGTAGAATGCTGCAAGTGTATTTGTTTTGTTTTGTTTGCATCGATCACTAGTTAGTAATATAAAGCTTTTTGGACCATTTTTGTGAGCCATGTTAAAACCTTTTATTCATTTGTGATTAACAAACCTTGAGATGTATTGGCTGAAGATGTATCATGAAACATCGACGTCTCTTGGGGAATATATGGCATTTCCGAAGTTCAAACTATGAAACATGGTCAAACTTAGGTAGATGATACACCATTAGCTTTTTCAACTTGTTCTATTATGGTACCCTCTGATGCCTGCAAGGTTTTGCAAATTTGCTGCGACAGTCACAGTTCAGTTTATGATTATGCTGTTTAAACATGGTAAATGAAAGAAGGTTTTGATTGCTATCTGATTGTAGTTAGGATGATAAAGAATTGGAAATTAATATTCTACAATCATGCAAAACTTGTATAGTGTTTCTTTTTTTCCTTTAGTGTAATTTTCCTATCTGAATCTTTATCGGCCTGTCAATTGTCCTTTTGAAATCATATACCTTAATTTTGTGGAACACAGGAGGTCAACTGAACAGGATAAGAACTAGCCTGAAATATCTTTGCCCCGCCGAACACATTCCTTCCAAGATTGAGGTGGATGTAAGTAATCTGGACATCGGGGAGAGAATTTTCATTCGTGACCTAGACGTCCATCCTTCTCTTAAGCTACTTAGCAAGAACGAAGTCATGCCTATATGTAAAATAGTCACAACAAACACGGAAACGGCAAACACAGAAATTTCAGAACCTTCATGA

mRNA sequence

ATGGCCAAGTGGTGGCGCTCCGCCGGAAGGAACCTTAGGTTGGCGGCGTTTTCAAGTGCTAGATCAGAATCGTGTCCATTTTCATCATCTCGAGCTGCTTCATACCATACGATCCAAGCAATACCAAGAGAGTGCAGCGGCAGCCGAATTTCGAGCAGAGATAGAGCTCAGGGAAGAATCCCCGCCGTCGTTTTCAGTCAAAAAATCCTTGAGAAAAACTCCGTCCACCGATCGCCGTCGCGGAAGCATCTGCTCACTACAGAGCAAAAGCAAATCCACTCCATTCTCAAATCCGTTGAGCTCCCTTTCTTTTGCTCCACTAGGTTCAAGCTCCAGATCCGCGCTGGTTCCGGATCTTCAGTCCTTCTTGAATCAGGATCCATCCTTCCAGTCAAAATTCATAGGGATGAAGAGACCGGGAAGATTTTGAATATTGTATTTGTATGGGCTGATGAAGGCTCGGAGTTGAAGGTAGATGTGCCAATTGTTTTTAAAGGCGAAGAGACTTGCCCTGGTCTTCAGAAAGGAGGTCAACTGAACAGGATAAGAACTAGCCTGAAATATCTTTGCCCCGCCGAACACATTCCTTCCAAGATTGAGGTGGATGTAAGTAATCTGGACATCGGGGAGAGAATTTTCATTCGTGACCTAGACGTCCATCCTTCTCTTAAGCTACTTAGCAAGAACGAAGTCATGCCTATATGTAAAATAGTCACAACAAACACGGAAACGGCAAACACAGAAATTTCAGAACCTTCATGA

Coding sequence (CDS)

ATGGCCAAGTGGTGGCGCTCCGCCGGAAGGAACCTTAGGTTGGCGGCGTTTTCAAGTGCTAGATCAGAATCGTGTCCATTTTCATCATCTCGAGCTGCTTCATACCATACGATCCAAGCAATACCAAGAGAGTGCAGCGGCAGCCGAATTTCGAGCAGAGATAGAGCTCAGGGAAGAATCCCCGCCGTCGTTTTCAGTCAAAAAATCCTTGAGAAAAACTCCGTCCACCGATCGCCGTCGCGGAAGCATCTGCTCACTACAGAGCAAAAGCAAATCCACTCCATTCTCAAATCCGTTGAGCTCCCTTTCTTTTGCTCCACTAGGTTCAAGCTCCAGATCCGCGCTGGTTCCGGATCTTCAGTCCTTCTTGAATCAGGATCCATCCTTCCAGTCAAAATTCATAGGGATGAAGAGACCGGGAAGATTTTGAATATTGTATTTGTATGGGCTGATGAAGGCTCGGAGTTGAAGGTAGATGTGCCAATTGTTTTTAAAGGCGAAGAGACTTGCCCTGGTCTTCAGAAAGGAGGTCAACTGAACAGGATAAGAACTAGCCTGAAATATCTTTGCCCCGCCGAACACATTCCTTCCAAGATTGAGGTGGATGTAAGTAATCTGGACATCGGGGAGAGAATTTTCATTCGTGACCTAGACGTCCATCCTTCTCTTAAGCTACTTAGCAAGAACGAAGTCATGCCTATATGTAAAATAGTCACAACAAACACGGAAACGGCAAACACAGAAATTTCAGAACCTTCATGA

Protein sequence

MAKWWRSAGRNLRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSSVLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTTNTETANTEISEPS

Homology

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BLAST of Cla020131 vs. Swiss-Prot
Match: RL25_ANAPZ (50S ribosomal protein L25 OS=Anaplasma phagocytophilum (strain HZ) GN=rplY PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-14
Identity = 52/203 (25.62%), Postives = 96/203 (47.29%), Query Frame = 1


Query: 38  IQAIPRECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILK 97
           + A  RE  G+  +   RA+G IPAV++ +        +R P     +     Q+  + K
Sbjct: 9   VDASVRERCGTGSARALRARGLIPAVIYGK--------NRDP-----INISLSQVDFLKK 68

Query: 98  SVELPFFCSTRFKLQIRAGSGSSVLLESGSILPVKIHRDEETGKILNIVFVWADEGSELK 157
               P F      +++  G     ++         I +   +G I ++ F + D+ +E+K
Sbjct: 69  CRTFPIFSKL---IELCIGEKKEYVITKD------IQKHPVSGAIAHVDFQFVDQDAEMK 128

Query: 158 VDVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDL 217
           ++VP+VF  E+ C G+++GG +N +  SL   C   HIP  +EVD+ ++ IG  + + DL
Sbjct: 129 MEVPLVFLNEQKCVGVKRGGVINILHRSLIIRCSPHHIPKSLEVDLIDVAIGHSLHVSDL 188

Query: 218 DVHPSLKLLSKNEVMPICKIVTT 241
            +  ++ ++ K E   I  +V +
Sbjct: 189 KLPSTINVVMKEEDPVIATVVAS 189

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BLAST of Cla020131 vs. Swiss-Prot
Match: RL25_ANAMM (50S ribosomal protein L25 OS=Anaplasma marginale (strain St. Maries) GN=rplY PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-13
Identity = 61/203 (30.05%), Postives = 95/203 (46.80%), Query Frame = 1


Query: 38  IQAIPRECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILK 97
           + A  R   G+  +   RA G IPAVV+ +    +++V+ S S    L           K
Sbjct: 9   VDASVRAKCGTGSARALRAAGLIPAVVYGKN---RDAVNISLSHADFLK----------K 68

Query: 98  SVELPFFCSTRFKLQIRAGSGSSVLLESGSILPVKIHRDEETGKILNIVFVWADEGSELK 157
              LP F S   KL I      ++  E        I +   +G + ++ F + D G+E+K
Sbjct: 69  CRTLPIF-SQLIKLCIDGKEEFALTKE--------IQKHPVSGAVSHVDFQFVDRGAEIK 128

Query: 158 VDVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDL 217
           V+VP+VF  E+ C G++ GG LN +  SL   C  + IP  +EVD+ +L IG  I + DL
Sbjct: 129 VEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDL 188

Query: 218 DVHPSLKLLSKNEVMPICKIVTT 241
            +  ++++  K E   I  +  T
Sbjct: 189 ALPETMQVAMKEENPVIASVSAT 189

[Close]

BLAST of Cla020131 vs. Swiss-Prot
Match: RL25_ANAMF (50S ribosomal protein L25 OS=Anaplasma marginale (strain Florida) GN=rplY PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-13
Identity = 60/203 (29.56%), Postives = 95/203 (46.80%), Query Frame = 1


Query: 38  IQAIPRECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILK 97
           + A  R   G+  +   RA G IPAVV+ +    +++V+ S S    L           K
Sbjct: 9   VDASVRAKCGTGSARALRAAGLIPAVVYGKN---RDAVNISLSHADFLK----------K 68

Query: 98  SVELPFFCSTRFKLQIRAGSGSSVLLESGSILPVKIHRDEETGKILNIVFVWADEGSELK 157
              LP F S   KL I      ++  E        I +   +G + ++ F + D G+E+K
Sbjct: 69  CRTLPIF-SQLIKLCIDGKEEFALTKE--------IQKHPVSGAVSHVDFQFVDRGAEIK 128

Query: 158 VDVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDL 217
           V+VP+VF  E+ C G++ GG LN +  SL   C  + IP  +EVD+ +L IG  I + DL
Sbjct: 129 VEVPLVFLNEQKCAGVKLGGALNILHRSLLIRCAPDAIPQSLEVDLLDLAIGHSIHVSDL 188

Query: 218 DVHPSLKLLSKNEVMPICKIVTT 241
            +  ++++  K E   +  +  T
Sbjct: 189 ALPETMQVAMKEENPVVASVSAT 189

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BLAST of Cla020131 vs. Swiss-Prot
Match: RL25_EHRRW (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplY PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-13
Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 1


Query: 43  RECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELP 102
           R   G+  S   R  G IPAVV+ +        HRSP   +L   E              
Sbjct: 14  RNSVGTGPSRTLRRNGAIPAVVYGK--------HRSPLSIYLSDRE-------------- 73

Query: 103 FFCSTRFKLQIRAGSGSSVLLESGS----ILPVKIHRDEETGKILNIVFVWADEGSELKV 162
            F S   K +  A S   + LE G     +L   I +   T +I ++ F + D G+E+K+
Sbjct: 74  -FLS---KYRSAALSTHLIELEIGEKKEYVLMRDIQKHPVTDRIQHVDFQFIDHGTEIKI 133

Query: 163 DVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLD 222
           +VP+VF  E+ C G++KGG LN +  +L   C    I   IEVD++NL IG  I + DL+
Sbjct: 134 EVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLN 192

Query: 223 VHPSLKLLSKNEVMPICKIVTTNTE 244
           +   + ++ K     +  I  T+++
Sbjct: 194 LPSEVTVVMKEHNPTLVTISGTSSD 192

[Close]

BLAST of Cla020131 vs. Swiss-Prot
Match: RL25_EHRRG (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Gardel) GN=rplY PE=3 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-13
Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 1


Query: 43  RECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELP 102
           R   G+  S   R  G IPAVV+ +        HRSP   +L   E              
Sbjct: 14  RNSVGTGPSRTLRRNGAIPAVVYGK--------HRSPLSIYLSDRE-------------- 73

Query: 103 FFCSTRFKLQIRAGSGSSVLLESGS----ILPVKIHRDEETGKILNIVFVWADEGSELKV 162
            F S   K +  A S   + LE G     +L   I +   T +I ++ F + D G+E+K+
Sbjct: 74  -FLS---KYRSAALSTHLIELEIGEKKEYVLMRDIQKHPVTDRIQHVDFQFIDHGTEIKI 133

Query: 163 DVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLD 222
           +VP+VF  E+ C G++KGG LN +  +L   C    I   IEVD++NL IG  I + DL+
Sbjct: 134 EVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLN 192

Query: 223 VHPSLKLLSKNEVMPICKIVTTNTE 244
           +   + ++ K     +  I  T+++
Sbjct: 194 LPSEVTVVMKEHNPTLVTISGTSSD 192

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BLAST of Cla020131 vs. TrEMBL
Match: A0A0A0LJM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G295950 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 1.6e-120
Identity = 223/253 (88.14%), Postives = 235/253 (92.89%), Query Frame = 1


Query: 1   MAKWWRSAGRNLRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRI 60
           MA WWRSA  NLRLAAFS  +SES PFSS RAA YHTIQAIPRECSG +ISS+DRAQGRI
Sbjct: 1   MANWWRSARTNLRLAAFSGTKSESFPFSSFRAA-YHTIQAIPRECSGRKISSKDRAQGRI 60

Query: 61  PAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120
           PAVVFSQ+ILEKNSVH SPSRKHLLTTE+KQIHSILKSVELPFFCSTRFKLQIRAGSGSS
Sbjct: 61  PAVVFSQQILEKNSVHGSPSRKHLLTTERKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120

Query: 121 VLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLN 180
           VLLESGSILP+KIHR+EETGKI NIVFVWADEGSELKVDVPIVFKGEE CPGLQKGGQLN
Sbjct: 121 VLLESGSILPIKIHRNEETGKIFNIVFVWADEGSELKVDVPIVFKGEEACPGLQKGGQLN 180

Query: 181 RIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTT 240
           +IRTSLKYLCPAEHIPSKIEVDVSNLDIG+RIFIRD+DVH S+KLLSKNEVMPICKIVT 
Sbjct: 181 KIRTSLKYLCPAEHIPSKIEVDVSNLDIGDRIFIRDVDVHSSMKLLSKNEVMPICKIVTI 240

Query: 241 NTETANTEISEPS 254
            +ETANTE S  S
Sbjct: 241 KSETANTETSATS 252

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BLAST of Cla020131 vs. TrEMBL
Match: A0A059ALZ6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00975 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 3.1e-95
Identity = 176/250 (70.40%), Postives = 209/250 (83.60%), Query Frame = 1


Query: 1   MAKWWRSAGRN-LRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGR 60
           MA+WWR+A    L+ AA SS      P     ++SYHTIQAIPRECSGSR++SRDRAQGR
Sbjct: 1   MARWWRAAAAGGLKTAALSSPPP---PVRPPPSSSYHTIQAIPRECSGSRVASRDRAQGR 60

Query: 61  IPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGS 120
           IP VVF+Q +LEK+   RSPSRK+LLTTE+KQI SIL SV LPFFCST F LQIRAGSGS
Sbjct: 61  IPTVVFAQGLLEKDPGARSPSRKYLLTTERKQIKSILSSVRLPFFCSTTFGLQIRAGSGS 120

Query: 121 SVLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQL 180
           S LLESG +LPVK+HRDEETGKILN+V VWADEGS+LKVDVP+ FKGEE CPGL+KGG L
Sbjct: 121 STLLESGKVLPVKVHRDEETGKILNLVLVWADEGSKLKVDVPVAFKGEEVCPGLKKGGYL 180

Query: 181 NRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVT 240
           N IRTSLK+ CPAEHIPSKIEVDVSNLDIG+RIF+RD++ HPS++LLSKN+ +PICK+++
Sbjct: 181 NAIRTSLKFTCPAEHIPSKIEVDVSNLDIGDRIFMRDVEFHPSMELLSKNDAIPICKVMS 240

Query: 241 TNTETANTEI 250
           T +E+A   +
Sbjct: 241 TKSESAEPAV 247

[Close]

BLAST of Cla020131 vs. TrEMBL
Match: A0A061DG52_THECC (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain OS=Theobroma cacao GN=TCM_000561 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 8.4e-93
Identity = 167/209 (79.90%), Postives = 192/209 (91.87%), Query Frame = 1


Query: 35  YHTIQAIPRECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHS 94
           YHTIQAIPREC+G+R+S+RDRAQGRIPAVVFSQ +LEK+  +RSPSRK LLTTE+KQI +
Sbjct: 22  YHTIQAIPRECTGNRVSTRDRAQGRIPAVVFSQGLLEKSPANRSPSRKQLLTTERKQIQT 81

Query: 95  ILKSVELPFFCSTRFKLQIRAGSGSSVLLESGSILPVKIHRDEETGKILNIVFVWADEGS 154
           ILKSV+LPFFCST F LQIRAGSGSSVLL+SG +LP+KIHRDEE+GKILN+VFVWADEG+
Sbjct: 82  ILKSVQLPFFCSTTFPLQIRAGSGSSVLLDSGRVLPIKIHRDEESGKILNLVFVWADEGT 141

Query: 155 ELKVDVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFI 214
           +LKVDVP+VFKGEE CPGL+KGG LNRIRTSLKYLCPAEHIP KIEVDVS LDIG+R+ +
Sbjct: 142 KLKVDVPVVFKGEEDCPGLKKGGSLNRIRTSLKYLCPAEHIPPKIEVDVSKLDIGDRVLM 201

Query: 215 RDLDVHPSLKLLSKNEVMPICKIVTTNTE 244
            D++VHPSLKLLSKNE MP+CKIV TN E
Sbjct: 202 HDVEVHPSLKLLSKNESMPMCKIVATNFE 230

[Close]

BLAST of Cla020131 vs. TrEMBL
Match: B9S8K5_RICCO (50S ribosomal protein L25, putative OS=Ricinus communis GN=RCOM_0602110 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.4e-92
Identity = 173/252 (68.65%), Postives = 209/252 (82.94%), Query Frame = 1


Query: 1   MAKWWRSAGRNLRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRI 60
           MAKW R            +    S P  +S+++ YHTIQAIPREC+GSR+++RDRAQGRI
Sbjct: 1   MAKWLRG---------LKTVVQSSSPSLNSQSSFYHTIQAIPRECTGSRVAARDRAQGRI 60

Query: 61  PAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120
           PAVVFSQ +L+KN   RS SRK LLTTE+KQI SIL SVELPFFCST F LQIRAGSGSS
Sbjct: 61  PAVVFSQSLLDKNPNSRSISRKQLLTTERKQIQSILTSVELPFFCSTTFNLQIRAGSGSS 120

Query: 121 VLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLN 180
           VL+ESG+ILP+K+HRDEETGKILN+VFVWAD+G+ELKVDVP++FKGEE CPGL+KGG+LN
Sbjct: 121 VLIESGTILPIKVHRDEETGKILNLVFVWADDGTELKVDVPLIFKGEEDCPGLKKGGKLN 180

Query: 181 RIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTT 240
           RIR SLK LCPAEHIP K+EVDVS+LDIG+++ + D++VHPSLKLLSKNE +PICKIV+T
Sbjct: 181 RIRKSLKVLCPAEHIPPKLEVDVSSLDIGDKVSMGDVEVHPSLKLLSKNENIPICKIVST 240

Query: 241 NTETANTEISEP 253
           + E+   E +EP
Sbjct: 241 DLESPEPE-TEP 242

[Close]

BLAST of Cla020131 vs. TrEMBL
Match: A0A067GVH3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026232mg PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.6e-91
Identity = 165/224 (73.66%), Postives = 196/224 (87.50%), Query Frame = 1


Query: 20  ARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRIPAVVFSQKILEKNSVHRSP 79
           A +   PFS +  + YHTIQAIPREC+GSR+S+RDR+QGRIPAVVF+Q +L+KN+  RSP
Sbjct: 12  AHNSRTPFSRT-TSYYHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSP 71

Query: 80  SRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSSVLLESGSILPVKIHRDEET 139
           SRK +L+TE+KQIHSILKSVELPFFCST F LQIRAGSGSSVLL+SG +LP+K+HRDEET
Sbjct: 72  SRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEET 131

Query: 140 GKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLNRIRTSLKYLCPAEHIPSKI 199
           G+ILN+VFVWAD+G+ELKVDVP+VFKG E+CPGL+KGG L  IRTSLKYLCPAEHI  KI
Sbjct: 132 GRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKI 191

Query: 200 EVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTTNTE 244
           EVDVSNLDIG+R+F+ D++VHPS KLLSKNE MP+CKI  T  E
Sbjct: 192 EVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLE 234

[Close]

BLAST of Cla020131 vs. NCBI nr
Match: gi|449461415|ref|XP_004148437.1| (PREDICTED: uncharacterized protein LOC101208580 [Cucumis sativus])

HSP 1 Score: 440.3 bits (1131), Expect = 2.3e-120
Identity = 223/253 (88.14%), Postives = 235/253 (92.89%), Query Frame = 1


Query: 1   MAKWWRSAGRNLRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRI 60
           MA WWRSA  NLRLAAFS  +SES PFSS RAA YHTIQAIPRECSG +ISS+DRAQGRI
Sbjct: 1   MANWWRSARTNLRLAAFSGTKSESFPFSSFRAA-YHTIQAIPRECSGRKISSKDRAQGRI 60

Query: 61  PAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120
           PAVVFSQ+ILEKNSVH SPSRKHLLTTE+KQIHSILKSVELPFFCSTRFKLQIRAGSGSS
Sbjct: 61  PAVVFSQQILEKNSVHGSPSRKHLLTTERKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120

Query: 121 VLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLN 180
           VLLESGSILP+KIHR+EETGKI NIVFVWADEGSELKVDVPIVFKGEE CPGLQKGGQLN
Sbjct: 121 VLLESGSILPIKIHRNEETGKIFNIVFVWADEGSELKVDVPIVFKGEEACPGLQKGGQLN 180

Query: 181 RIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTT 240
           +IRTSLKYLCPAEHIPSKIEVDVSNLDIG+RIFIRD+DVH S+KLLSKNEVMPICKIVT 
Sbjct: 181 KIRTSLKYLCPAEHIPSKIEVDVSNLDIGDRIFIRDVDVHSSMKLLSKNEVMPICKIVTI 240

Query: 241 NTETANTEISEPS 254
            +ETANTE S  S
Sbjct: 241 KSETANTETSATS 252

[Close]

BLAST of Cla020131 vs. NCBI nr
Match: gi|659116072|ref|XP_008457885.1| (PREDICTED: uncharacterized protein LOC103497462 [Cucumis melo])

HSP 1 Score: 438.3 bits (1126), Expect = 8.8e-120
Identity = 220/253 (86.96%), Postives = 235/253 (92.89%), Query Frame = 1


Query: 1   MAKWWRSAGRNLRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRI 60
           MAKWWRSAG NLR A  S  +SES PFSS RAA YHTIQAIPRECSG +ISS+DRAQGRI
Sbjct: 1   MAKWWRSAGTNLRWAVLSGTKSESFPFSSFRAA-YHTIQAIPRECSGRKISSKDRAQGRI 60

Query: 61  PAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120
           PAVVFSQ++LEKN VH SPSRKHLLTTE+KQIHSILKSV+LPFFCSTRF+LQIRAGSGSS
Sbjct: 61  PAVVFSQQLLEKNPVHGSPSRKHLLTTERKQIHSILKSVKLPFFCSTRFQLQIRAGSGSS 120

Query: 121 VLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLN 180
           VLLESGSILP+KIHR+EETGKI NIVFVWADEGSELKVDVPIVFKGEE CPGLQKGGQLN
Sbjct: 121 VLLESGSILPIKIHRNEETGKIFNIVFVWADEGSELKVDVPIVFKGEEACPGLQKGGQLN 180

Query: 181 RIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTT 240
           +IRTSLKYLCPAEHIPSKIEVDVSNLDIG+RIFIRD+DVHPSLKLLSKNEVMPICKIVTT
Sbjct: 181 KIRTSLKYLCPAEHIPSKIEVDVSNLDIGDRIFIRDVDVHPSLKLLSKNEVMPICKIVTT 240

Query: 241 NTETANTEISEPS 254
            ++T NTE SE S
Sbjct: 241 KSKTENTEASETS 252

[Close]

BLAST of Cla020131 vs. NCBI nr
Match: gi|1009144881|ref|XP_015890040.1| (PREDICTED: 50S ribosomal protein L25-like [Ziziphus jujuba])

HSP 1 Score: 360.9 bits (925), Expect = 1.8e-96
Identity = 178/246 (72.36%), Postives = 207/246 (84.15%), Query Frame = 1


Query: 1   MAKWWRSAGRNLRLAAFSSARSESC--PFSSSRAASYHTIQAIPRECSGSRISSRDRAQG 60
           MAKWWRS    L+    + A       P   SRA  YHTIQAIPREC GS +S +DRAQG
Sbjct: 1   MAKWWRSGAHGLKTVVENPALQSWAWPPRLLSRATLYHTIQAIPRECCGSGVSVKDRAQG 60

Query: 61  RIPAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSG 120
           RIPAVVFSQ +L+KN  +RS S+KHL+TTE+KQI +ILKSV+LPFFCST F LQIRAGSG
Sbjct: 61  RIPAVVFSQSLLDKNPSNRSASKKHLVTTERKQIQAILKSVQLPFFCSTTFPLQIRAGSG 120

Query: 121 SSVLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQ 180
           SSVLLESG++LP+KIHRDEETGKILN+VFVWA++GSELKVDVP+VFKGE+ CPGL+KGG 
Sbjct: 121 SSVLLESGNVLPIKIHRDEETGKILNLVFVWAEDGSELKVDVPVVFKGEDKCPGLKKGGY 180

Query: 181 LNRIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIV 240
           LNRIRTSL+YLCPAEHIP KIEVDVS+LDIG+RI++ D+ VHPSLKLLSKNE MP+CKIV
Sbjct: 181 LNRIRTSLRYLCPAEHIPPKIEVDVSSLDIGDRIYMHDVQVHPSLKLLSKNENMPMCKIV 240

Query: 241 TTNTET 245
           TT  E+
Sbjct: 241 TTKLES 246

[Close]

BLAST of Cla020131 vs. NCBI nr
Match: gi|645272726|ref|XP_008241535.1| (PREDICTED: uncharacterized protein LOC103339950 [Prunus mume])

HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96
Identity = 176/243 (72.43%), Postives = 206/243 (84.77%), Query Frame = 1


Query: 1   MAKWWRSAGRNLRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRI 60
           MA  WRSAG NLR      +  +  PF S  +A YHTIQAIPREC+G+R+S +DRAQGRI
Sbjct: 1   MANRWRSAGGNLRAVLQHPSSRQQAPFQSF-SALYHTIQAIPRECTGNRVSVKDRAQGRI 60

Query: 61  PAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120
           PAVVFSQ++    +  RS S+KHLLTTE+KQI +ILKSVELPFFCSTRF LQIRAGSGSS
Sbjct: 61  PAVVFSQELNPSTTTVRSVSKKHLLTTERKQIQAILKSVELPFFCSTRFPLQIRAGSGSS 120

Query: 121 VLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLN 180
            LLESG++LP+KIHRDEE+GKILN+VFVWADEGS+LKVDVP+VFKGE+ CPGL+KGG LN
Sbjct: 121 DLLESGNVLPIKIHRDEESGKILNLVFVWADEGSQLKVDVPVVFKGEDVCPGLKKGGHLN 180

Query: 181 RIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTT 240
           +IRT+LKYLCPAEHIP KIEVD+S LDIG+R+FI D++VHPS+KLLSKNE MPICKIV T
Sbjct: 181 KIRTTLKYLCPAEHIPHKIEVDISKLDIGDRVFIPDVEVHPSMKLLSKNETMPICKIVAT 240

Query: 241 NTE 244
             E
Sbjct: 241 KLE 242

[Close]

BLAST of Cla020131 vs. NCBI nr
Match: gi|694381407|ref|XP_009366785.1| (PREDICTED: uncharacterized protein LOC103956509 [Pyrus x bretschneideri])

HSP 1 Score: 356.7 bits (914), Expect = 3.4e-95
Identity = 178/243 (73.25%), Postives = 208/243 (85.60%), Query Frame = 1


Query: 1   MAKWWRSAGRNLRLAAFSSARSESCPFSSSRAASYHTIQAIPRECSGSRISSRDRAQGRI 60
           MA  WR+AG +LR    + +     PFSS  AA YHTIQAIPRE +G+R+S +DRAQGRI
Sbjct: 1   MANRWRAAGSSLRAVLQNPSSGPQPPFSSF-AAMYHTIQAIPREVTGNRVSVKDRAQGRI 60

Query: 61  PAVVFSQKILEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFKLQIRAGSGSS 120
           PAVVFSQ++   ++  R  SRKHLLTTE+KQI +ILKSVELPFFCSTRF LQIRAGSGSS
Sbjct: 61  PAVVFSQQLNPTSAAARPVSRKHLLTTERKQIQAILKSVELPFFCSTRFPLQIRAGSGSS 120

Query: 121 VLLESGSILPVKIHRDEETGKILNIVFVWADEGSELKVDVPIVFKGEETCPGLQKGGQLN 180
            LLESG+++P+KIHRDEE+GKILN+VFVWADEGSELKVDVP+VFKGE+ CPGL+KGG LN
Sbjct: 121 DLLESGNVIPIKIHRDEESGKILNLVFVWADEGSELKVDVPVVFKGEDVCPGLKKGGHLN 180

Query: 181 RIRTSLKYLCPAEHIPSKIEVDVSNLDIGERIFIRDLDVHPSLKLLSKNEVMPICKIVTT 240
           +IRTSLKYL PAEHIP+KIEVDVSNLDIG+R+FI D++VHPS+KLLSKNE MPICKIV T
Sbjct: 181 KIRTSLKYLGPAEHIPTKIEVDVSNLDIGDRVFIPDVEVHPSMKLLSKNETMPICKIVAT 240

Query: 241 NTE 244
           N E
Sbjct: 241 NLE 242

The following BLAST results are available for this feature:

BLAST of Cla020131 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL25_ANAPZ	3.8e-14	25.62	50S ribosomal protein L25 OS=Anaplasma phagocytophilum (strain HZ) GN=rplY PE=3 ...	[more]
RL25_ANAMM	1.1e-13	30.05	50S ribosomal protein L25 OS=Anaplasma marginale (strain St. Maries) GN=rplY PE=...	[more]
RL25_ANAMF	1.5e-13	29.56	50S ribosomal protein L25 OS=Anaplasma marginale (strain Florida) GN=rplY PE=3 S...	[more]
RL25_EHRRW	1.9e-13	30.24	50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplY ...	[more]
RL25_EHRRG	1.9e-13	30.24	50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Gardel) GN=rplY PE=3 ...	[more]

BLAST of Cla020131 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJM8_CUCSA	1.6e-120	88.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G295950 PE=4 SV=1	[more]
A0A059ALZ6_EUCGR	3.1e-95	70.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00975 PE=4 SV=1	[more]
A0A061DG52_THECC	8.4e-93	79.90	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain OS=Theobrom...	[more]
B9S8K5_RICCO	5.4e-92	68.65	50S ribosomal protein L25, putative OS=Ricinus communis GN=RCOM_0602110 PE=4 SV=...	[more]
A0A067GVH3_CITSI	4.6e-91	73.66	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026232mg PE=4 SV=1	[more]

BLAST of Cla020131 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461415\|ref\|XP_004148437.1\|	2.3e-120	88.14	PREDICTED: uncharacterized protein LOC101208580 [Cucumis sativus]	[more]
gi\|659116072\|ref\|XP_008457885.1\|	8.8e-120	86.96	PREDICTED: uncharacterized protein LOC103497462 [Cucumis melo]	[more]
gi\|1009144881\|ref\|XP_015890040.1\|	1.8e-96	72.36	PREDICTED: 50S ribosomal protein L25-like [Ziziphus jujuba]	[more]
gi\|645272726\|ref\|XP_008241535.1\|	6.8e-96	72.43	PREDICTED: uncharacterized protein LOC103339950 [Prunus mume]	[more]
gi\|694381407\|ref\|XP_009366785.1\|	3.4e-95	73.25	PREDICTED: uncharacterized protein LOC103956509 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011035	Ribosomal_L25/Gln-tRNA_synth
IPR020056	Rbsml_L25/Gln-tRNA_synth_N
IPR020057	Ribosomal_L25_b-dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla020131	Cla020131	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla020131	Cla020131.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla020131.1.cds1	Cla020131.1.cds1	CDS
Cla020131.1.cds2	Cla020131.1.cds2	CDS
Cla020131.1.cds3	Cla020131.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011035	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	unknown	SSF50715	Ribosomal protein L25-like	coord: 42..238 score: 5.23
IPR020056	Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain	GENE3D	G3DSA:2.40.240.10		coord: 37..147 score: 8.
IPR020057	Ribosomal protein L25, beta domain	GENE3D	G3DSA:2.170.120.20		coord: 153..245 score: 4.9
IPR020057	Ribosomal protein L25, beta domain	PFAM	PF14693	Ribosomal_TL5_C	coord: 156..239 score: 2.1
None	No IPR available	PANTHER	PTHR33284	FAMILY NOT NAMED	coord: 1..251 score: 9.4E
None	No IPR available	PANTHER	PTHR33284:SF2	SUBFAMILY NOT NAMED	coord: 1..251 score: 9.4E