Cla019549.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019549
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Gag-protease polyprotein (AHRD V1 -- Q84KB1_CUCME); contains Interpro domain(s) IPR005162 Retrotransposon gag protein
Location	Chr3 : 6825642 .. 6826210 (+)
Sequence length	513

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGGGTGAATCAAGTCATCCTCAAGCTGGAGTTAATGTTGAGGAACAGATCTTTACTAGAATTGCTGAAAGGTTGGCTGCAGGTATCAGATCGGTGCAGTCTGACCCAGAGAAGAAATATGGAACTGAAAGGTTGAAAGCTTTGGGTGCTACTACTTTCAAAGGCATCGCAGATCCTGTCAATGCAGAGGTATGGCTGAACCTGCTTGAAAAATGTTACCGTGTGATAAGATGCCCTAACGACAGAAAGGTAGAGTTGACAATGTTTTTACTCCAGAAGAGGGCGGAAGATTGGTGGAGAGTAATGAAGAGCAGAAGGGGAGGAACAGAAGGATAAGTTGGGACGAGTTTAAGAAAGCGTTCCAAGATAAGTATTGTACAAAAGCATTCCGTGATGCCAAACAGAATGAATTTCTTAAGTTAGTGCAAAGGTCAATGACAGTGGCAGAATACAAAAAGAAATATATTGAGTTATCCAAGTATGCCATCACCATTGTAGCTGATGAGGTCGATCGATACAAGAGATTTGAGAAGGATTGCTGGAGGAAATTCATACTCCAGTGA

mRNA sequence

ATGTCTGAGGGTGAATCAAGTCATCCTCAAGCTGGAGTTAATGTTGAGGAACAGATCTTTACTAGAATTGCTGAAAGGTTGGCTGCAGGTATCAGATCGGTGCAGTCTGACCCAGAGAAGAAATATGGAACTGAAAGGTTGAAAGCTTTGGGTGCTACTACTTTCAAAGGCATCGCAGATCCTGTCAATGCAGAGAAAGGTAGAGTTGACAATGTTTTTACTCCAGAAGAGGGCGGAAGATTGGTGGAGAGTAATGAAGAGCAGAAGGGGAGGAACAGAAGGATAAGTTGGGACGAGTTTAAGAAAGCGTTCCAAGATAAGTATTGTACAAAAGCATTCCGTGATGCCAAACAGAATGAATTTCTTAAGTTAGTGCAAAGGTCAATGACAGTGGCAGAATACAAAAAGAAATATATTGAGTTATCCAAGTATGCCATCACCATTGTAGCTGATGAGGTCGATCGATACAAGAGATTTGAGAAGGATTGCTGGAGGAAATTCATACTCCAGTGA

Coding sequence (CDS)

ATGTCTGAGGGTGAATCAAGTCATCCTCAAGCTGGAGTTAATGTTGAGGAACAGATCTTTACTAGAATTGCTGAAAGGTTGGCTGCAGGTATCAGATCGGTGCAGTCTGACCCAGAGAAGAAATATGGAACTGAAAGGTTGAAAGCTTTGGGTGCTACTACTTTCAAAGGCATCGCAGATCCTGTCAATGCAGAGAAAGGTAGAGTTGACAATGTTTTTACTCCAGAAGAGGGCGGAAGATTGGTGGAGAGTAATGAAGAGCAGAAGGGGAGGAACAGAAGGATAAGTTGGGACGAGTTTAAGAAAGCGTTCCAAGATAAGTATTGTACAAAAGCATTCCGTGATGCCAAACAGAATGAATTTCTTAAGTTAGTGCAAAGGTCAATGACAGTGGCAGAATACAAAAAGAAATATATTGAGTTATCCAAGTATGCCATCACCATTGTAGCTGATGAGGTCGATCGATACAAGAGATTTGAGAAGGATTGCTGGAGGAAATTCATACTCCAGTGA

Protein sequence

MSEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADPVNAEKGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCWRKFILQ

Homology

[Close]

BLAST of Cla019549 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 56/180 (31.11%), Postives = 90/180 (50.00%), Query Frame = 1


Query: 6   SSHPQAGVNVEE--QIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADPVN 65
           S  P AG N  +  Q+ ++    +A  +R  +     +   +R+K LGA  F G  DP  
Sbjct: 36  SPSPHAGDNTLDMRQVLSQFTRTVATALRGRRGTESSEI--KRVKELGAKEFLGSTDPAE 95

Query: 66  AEKG--RVDNVFT-----PEEGGRLV------------ESNEEQKGRNRRISWDEFKKAF 125
           AE     V+ +F       E+  RL             ++ +        I+W+EF++ F
Sbjct: 96  AELWITDVERIFEVLECPAEDRVRLATFLLKGNAYHWWKAVKRGYENPAAINWEEFQRVF 155

Query: 126 QDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCW 165
            D +   +++ AK++EFL L Q SM+V EY+ K+ ELS++A  +VA E DR +RFE+  W
Sbjct: 156 SDPFYPPSYKQAKKSEFLYLKQGSMSVVEYEHKFNELSRFAPELVATEEDRCRRFEEGLW 213

[Close]

BLAST of Cla019549 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.3e-12
Identity = 55/164 (33.54%), Postives = 82/164 (50.00%), Query Frame = 1


Query: 20  FTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADPVNAEKG--RVDNVFT--- 79
           FTR       G R  +S   K     R+K LGA  F G  DP  AE     V+ +F    
Sbjct: 55  FTRTMATALRGRRGTESSEIK-----RVKELGAKEFVGSTDPAEAESWITDVERIFEVLE 114

Query: 80  --PEEGGRLV------------ESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNE 139
              E+  RL             ++ +        I+W+EF++ F +++   ++R AK++E
Sbjct: 115 CPAEDRVRLATFLLKGNAYHWWKAVKRGYENPAAINWEEFQRVFSEQFYPPSYRHAKKSE 174

Query: 140 FLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCW 165
           FL L Q SM+V EY+ K+ ELS++A  +VA E DR +RFE+  W
Sbjct: 175 FLYLKQGSMSVMEYEHKFNELSRFAPELVATEEDRCRRFEEGLW 213

[Close]

BLAST of Cla019549 vs. TrEMBL
Match: M5Y283_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 50/157 (31.85%), Postives = 82/157 (52.23%), Query Frame = 1


Query: 32  RSVQSDPEKKYGTE-----RLKALGATTFKGIADPVNAEK-----GRVDNVFTPEEGGR- 91
           R+V +  +++  TE     R+K LGA  F G ADP  A+       R+  V    +  R 
Sbjct: 62  RTVSTALQRRRNTESSDIKRVKELGANEFHGSADPAEADACLTDVERIFEVLQCPDRDRV 121

Query: 92  -----LVESNEEQKGRNRR--------ISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQR 151
                L++ N     +  R        ++W+EF++ F D++   ++++ K++EFL L Q 
Sbjct: 122 RLAAFLLKGNAYHGWKAVRRGYANPAALTWEEFQRVFFDQFYPHSYKNEKKSEFLHLRQG 181

Query: 152 SMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCW 165
           SM+V EY+ K+ ELS++A  +V  E DR  RFE+  W
Sbjct: 182 SMSVLEYEHKFNELSRFAPELVTTEEDRCTRFEEGLW 218

[Close]

BLAST of Cla019549 vs. TrEMBL
Match: A0A0K9JUF1_9BURK (Uncharacterized protein OS=Candidatus Burkholderia humilis GN=BHUM_04587c PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 80  RLVESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYI 139
           R++E   EQ G  R  +WD F   F++K+  +  ++ KQ EF+ L QR+MTVA+Y+KK+ 
Sbjct: 27  RIIEQKWEQIGTPR--TWDNFISVFRNKFIPEVVKERKQEEFIYLRQRTMTVAQYEKKFN 86

Query: 140 ELSKYAITIVADEVDRYKRF 160
            LSKYA  +V  ++ R KRF
Sbjct: 87  RLSKYAPDLVDTDIKRNKRF 104

[Close]

BLAST of Cla019549 vs. TrEMBL
Match: M5XAA1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 95  ISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVD 154
           I W+EF++ F +++   ++R AK++EFL L Q SM+V EY+ K+ +LS++A  +VA E D
Sbjct: 57  IKWEEFQRVFSEQFYPHSYRHAKKSEFLYLKQGSMSVVEYEHKFNKLSRFAPELVATEDD 116

Query: 155 RYKRFEKD-CWR 166
           R +RFE+  CW+
Sbjct: 117 RCRRFEEGLCWK 128

[Close]

BLAST of Cla019549 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 1


Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           SEGESSH Q  + V+E++  +I E +  G+RS+ ++ EK +G ERLKALGATTF    DP
Sbjct: 29  SEGESSHQQGDMTVDEKLLNKITEGITTGMRSLNNNLEKTFGIERLKALGATTFARTTDP 88

Query: 62  VNAE-------------------KGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKK 121
            + E                   K  +      +       + E +      ISW+EFKK
Sbjct: 89  TDGEGWMNVLEKCFKVMRCLDDRKVELATFLLKKGADYWWRTFESRYHDTNEISWNEFKK 148

Query: 122 AFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFE 161
           AF +KY  ++++DAK++EF +LV  SMT+AEY+KKYI+LSKYA +++ DE+DR KRFE
Sbjct: 149 AFYEKYYPRSYKDAKRSEFFRLVLGSMTIAEYEKKYIKLSKYATSMIEDEIDRCKRFE 206

[Close]

BLAST of Cla019549 vs. NCBI nr
Match: gi|659095113|ref|XP_008448403.1| (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20
Identity = 67/179 (37.43%), Postives = 92/179 (51.40%), Query Frame = 1


Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           SE  SS P+       + F R A+ +    R   SDPEK YG ERLK LGAT F+G  DP
Sbjct: 24  SERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDPEKMYGIERLKKLGATVFEGSTDP 83

Query: 62  VNAE-------------------KGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKK 121
            NAE                   K R+      +E     +S   ++   R + W  F+ 
Sbjct: 84  ANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAEGWWKSIIARRNDARTLDWQTFRG 143

Query: 122 AFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEK 162
            F++KY    + +AK++EF +L Q S++VAEY++KY ELS+Y   IVA E DR  RFE+
Sbjct: 144 IFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYTELSRYVEVIVAYESDRCCRFER 202

[Close]

BLAST of Cla019549 vs. NCBI nr
Match: gi|659087174|ref|XP_008444312.1| (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = 1


Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           SE  SS P+    V  + F R A+ ++   R+  SD +K YG E+LK LGAT F+G  DP
Sbjct: 9   SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 68

Query: 62  VNAE-------------------KGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKK 121
            +AE                   K R+      +E    ++S    +   R + W  F+ 
Sbjct: 69  ADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGWLKSIIASRNDARTLYWQTFRG 128

Query: 122 AFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEK 162
            F++KY    + +AK++EF++L Q S+ VAEY++KY ELS+Y   IVA E DR +RFE+
Sbjct: 129 IFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYTELSRYVEMIVASESDRCRRFER 187

[Close]

BLAST of Cla019549 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           S+ ESS P    N+EEQ+  R+A+RL +GIRS QSDPEKKYG ERLKALGATTF G  +P
Sbjct: 47  SDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNP 106

Query: 62  VNAE 66
            +AE
Sbjct: 107 ADAE 110

[Close]

BLAST of Cla019549 vs. NCBI nr
Match: gi|659113911|ref|XP_008456815.1| (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = 1


Query: 42  YGTERLKALGATTFKGIADPVNAE-------------------KGRVDNVFTPEEGGRLV 101
           YG ERLK LGAT F+G  D  +A+                   K R+      +E     
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 102 ESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELS 161
           +S   +    R + W  F+  F++KY    + +AK++EFL+L Q S++VAEY+ KY ELS
Sbjct: 62  KSIIARCNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSVAEYEMKYTELS 121

The following BLAST results are available for this feature:

BLAST of Cla019549 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XSR7_PRUPE	2.9e-12	31.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1	[more]
M5VK25_PRUPE	8.3e-12	33.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1	[more]
M5Y283_PRUPE	2.7e-10	31.85	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1	[more]
A0A0K9JUF1_9BURK	3.9e-09	43.75	Uncharacterized protein OS=Candidatus Burkholderia humilis GN=BHUM_04587c PE=4 S...	[more]
M5XAA1_PRUPE	3.9e-09	44.44	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 S...	[more]

BLAST of Cla019549 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116534\|ref\|XP_008458118.1\|	2.6e-30	42.13	PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo]	[more]
gi\|659095113\|ref\|XP_008448403.1\|	3.1e-20	37.43	PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo]	[more]
gi\|659087174\|ref\|XP_008444312.1\|	1.2e-19	35.75	PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo]	[more]
gi\|659072264\|ref\|XP_008464580.1\|	1.7e-13	64.06	PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo]	[more]
gi\|659113911\|ref\|XP_008456815.1\|	3.7e-13	36.69	PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla019549	Cla019549	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla019549	Cla019549.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla019549.1.cds1	Cla019549.1.cds1	CDS
Cla019549.1.cds2	Cla019549.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 88..152 score: 2.