Cla019549 (gene) Watermelon (97103) v1

NameCla019549
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag-protease polyprotein (AHRD V1 *-*- Q84KB1_CUCME); contains Interpro domain(s) IPR005162 Retrotransposon gag protein
LocationChr3 : 6825642 .. 6826210 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGAGGGTGAATCAAGTCATCCTCAAGCTGGAGTTAATGTTGAGGAACAGATCTTTACTAGAATTGCTGAAAGGTTGGCTGCAGGTATCAGATCGGTGCAGTCTGACCCAGAGAAGAAATATGGAACTGAAAGGTTGAAAGCTTTGGGTGCTACTACTTTCAAAGGCATCGCAGATCCTGTCAATGCAGAGGTATGGCTGAACCTGCTTGAAAAATGTTACCGTGTGATAAGATGCCCTAACGACAGAAAGGTAGAGTTGACAATGTTTTTACTCCAGAAGAGGGCGGAAGATTGGTGGAGAGTAATGAAGAGCAGAAGGGGAGGAACAGAAGGATAAGTTGGGACGAGTTTAAGAAAGCGTTCCAAGATAAGTATTGTACAAAAGCATTCCGTGATGCCAAACAGAATGAATTTCTTAAGTTAGTGCAAAGGTCAATGACAGTGGCAGAATACAAAAAGAAATATATTGAGTTATCCAAGTATGCCATCACCATTGTAGCTGATGAGGTCGATCGATACAAGAGATTTGAGAAGGATTGCTGGAGGAAATTCATACTCCAGTGA

mRNA sequence

ATGTCTGAGGGTGAATCAAGTCATCCTCAAGCTGGAGTTAATGTTGAGGAACAGATCTTTACTAGAATTGCTGAAAGGTTGGCTGCAGGTATCAGATCGGTGCAGTCTGACCCAGAGAAGAAATATGGAACTGAAAGGTTGAAAGCTTTGGGTGCTACTACTTTCAAAGGCATCGCAGATCCTGTCAATGCAGAGAAAGGTAGAGTTGACAATGTTTTTACTCCAGAAGAGGGCGGAAGATTGGTGGAGAGTAATGAAGAGCAGAAGGGGAGGAACAGAAGGATAAGTTGGGACGAGTTTAAGAAAGCGTTCCAAGATAAGTATTGTACAAAAGCATTCCGTGATGCCAAACAGAATGAATTTCTTAAGTTAGTGCAAAGGTCAATGACAGTGGCAGAATACAAAAAGAAATATATTGAGTTATCCAAGTATGCCATCACCATTGTAGCTGATGAGGTCGATCGATACAAGAGATTTGAGAAGGATTGCTGGAGGAAATTCATACTCCAGTGA

Coding sequence (CDS)

ATGTCTGAGGGTGAATCAAGTCATCCTCAAGCTGGAGTTAATGTTGAGGAACAGATCTTTACTAGAATTGCTGAAAGGTTGGCTGCAGGTATCAGATCGGTGCAGTCTGACCCAGAGAAGAAATATGGAACTGAAAGGTTGAAAGCTTTGGGTGCTACTACTTTCAAAGGCATCGCAGATCCTGTCAATGCAGAGAAAGGTAGAGTTGACAATGTTTTTACTCCAGAAGAGGGCGGAAGATTGGTGGAGAGTAATGAAGAGCAGAAGGGGAGGAACAGAAGGATAAGTTGGGACGAGTTTAAGAAAGCGTTCCAAGATAAGTATTGTACAAAAGCATTCCGTGATGCCAAACAGAATGAATTTCTTAAGTTAGTGCAAAGGTCAATGACAGTGGCAGAATACAAAAAGAAATATATTGAGTTATCCAAGTATGCCATCACCATTGTAGCTGATGAGGTCGATCGATACAAGAGATTTGAGAAGGATTGCTGGAGGAAATTCATACTCCAGTGA

Protein sequence

MSEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADPVNAEKGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCWRKFILQ
BLAST of Cla019549 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 56/180 (31.11%), Postives = 90/180 (50.00%), Query Frame = 1

Query: 6   SSHPQAGVNVEE--QIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADPVN 65
           S  P AG N  +  Q+ ++    +A  +R  +     +   +R+K LGA  F G  DP  
Sbjct: 36  SPSPHAGDNTLDMRQVLSQFTRTVATALRGRRGTESSEI--KRVKELGAKEFLGSTDPAE 95

Query: 66  AEKG--RVDNVFT-----PEEGGRLV------------ESNEEQKGRNRRISWDEFKKAF 125
           AE     V+ +F       E+  RL             ++ +        I+W+EF++ F
Sbjct: 96  AELWITDVERIFEVLECPAEDRVRLATFLLKGNAYHWWKAVKRGYENPAAINWEEFQRVF 155

Query: 126 QDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCW 165
            D +   +++ AK++EFL L Q SM+V EY+ K+ ELS++A  +VA E DR +RFE+  W
Sbjct: 156 SDPFYPPSYKQAKKSEFLYLKQGSMSVVEYEHKFNELSRFAPELVATEEDRCRRFEEGLW 213

BLAST of Cla019549 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.3e-12
Identity = 55/164 (33.54%), Postives = 82/164 (50.00%), Query Frame = 1

Query: 20  FTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADPVNAEKG--RVDNVFT--- 79
           FTR       G R  +S   K     R+K LGA  F G  DP  AE     V+ +F    
Sbjct: 55  FTRTMATALRGRRGTESSEIK-----RVKELGAKEFVGSTDPAEAESWITDVERIFEVLE 114

Query: 80  --PEEGGRLV------------ESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNE 139
              E+  RL             ++ +        I+W+EF++ F +++   ++R AK++E
Sbjct: 115 CPAEDRVRLATFLLKGNAYHWWKAVKRGYENPAAINWEEFQRVFSEQFYPPSYRHAKKSE 174

Query: 140 FLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCW 165
           FL L Q SM+V EY+ K+ ELS++A  +VA E DR +RFE+  W
Sbjct: 175 FLYLKQGSMSVMEYEHKFNELSRFAPELVATEEDRCRRFEEGLW 213

BLAST of Cla019549 vs. TrEMBL
Match: M5Y283_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 50/157 (31.85%), Postives = 82/157 (52.23%), Query Frame = 1

Query: 32  RSVQSDPEKKYGTE-----RLKALGATTFKGIADPVNAEK-----GRVDNVFTPEEGGR- 91
           R+V +  +++  TE     R+K LGA  F G ADP  A+       R+  V    +  R 
Sbjct: 62  RTVSTALQRRRNTESSDIKRVKELGANEFHGSADPAEADACLTDVERIFEVLQCPDRDRV 121

Query: 92  -----LVESNEEQKGRNRR--------ISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQR 151
                L++ N     +  R        ++W+EF++ F D++   ++++ K++EFL L Q 
Sbjct: 122 RLAAFLLKGNAYHGWKAVRRGYANPAALTWEEFQRVFFDQFYPHSYKNEKKSEFLHLRQG 181

Query: 152 SMTVAEYKKKYIELSKYAITIVADEVDRYKRFEKDCW 165
           SM+V EY+ K+ ELS++A  +V  E DR  RFE+  W
Sbjct: 182 SMSVLEYEHKFNELSRFAPELVTTEEDRCTRFEEGLW 218

BLAST of Cla019549 vs. TrEMBL
Match: A0A0K9JUF1_9BURK (Uncharacterized protein OS=Candidatus Burkholderia humilis GN=BHUM_04587c PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1

Query: 80  RLVESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYI 139
           R++E   EQ G  R  +WD F   F++K+  +  ++ KQ EF+ L QR+MTVA+Y+KK+ 
Sbjct: 27  RIIEQKWEQIGTPR--TWDNFISVFRNKFIPEVVKERKQEEFIYLRQRTMTVAQYEKKFN 86

Query: 140 ELSKYAITIVADEVDRYKRF 160
            LSKYA  +V  ++ R KRF
Sbjct: 87  RLSKYAPDLVDTDIKRNKRF 104

BLAST of Cla019549 vs. TrEMBL
Match: M5XAA1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1

Query: 95  ISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVD 154
           I W+EF++ F +++   ++R AK++EFL L Q SM+V EY+ K+ +LS++A  +VA E D
Sbjct: 57  IKWEEFQRVFSEQFYPHSYRHAKKSEFLYLKQGSMSVVEYEHKFNKLSRFAPELVATEDD 116

Query: 155 RYKRFEKD-CWR 166
           R +RFE+  CW+
Sbjct: 117 RCRRFEEGLCWK 128

BLAST of Cla019549 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 1

Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           SEGESSH Q  + V+E++  +I E +  G+RS+ ++ EK +G ERLKALGATTF    DP
Sbjct: 29  SEGESSHQQGDMTVDEKLLNKITEGITTGMRSLNNNLEKTFGIERLKALGATTFARTTDP 88

Query: 62  VNAE-------------------KGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKK 121
            + E                   K  +      +       + E +      ISW+EFKK
Sbjct: 89  TDGEGWMNVLEKCFKVMRCLDDRKVELATFLLKKGADYWWRTFESRYHDTNEISWNEFKK 148

Query: 122 AFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFE 161
           AF +KY  ++++DAK++EF +LV  SMT+AEY+KKYI+LSKYA +++ DE+DR KRFE
Sbjct: 149 AFYEKYYPRSYKDAKRSEFFRLVLGSMTIAEYEKKYIKLSKYATSMIEDEIDRCKRFE 206

BLAST of Cla019549 vs. NCBI nr
Match: gi|659095113|ref|XP_008448403.1| (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20
Identity = 67/179 (37.43%), Postives = 92/179 (51.40%), Query Frame = 1

Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           SE  SS P+       + F R A+ +    R   SDPEK YG ERLK LGAT F+G  DP
Sbjct: 24  SERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDPEKMYGIERLKKLGATVFEGSTDP 83

Query: 62  VNAE-------------------KGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKK 121
            NAE                   K R+      +E     +S   ++   R + W  F+ 
Sbjct: 84  ANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAEGWWKSIIARRNDARTLDWQTFRG 143

Query: 122 AFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEK 162
            F++KY    + +AK++EF +L Q S++VAEY++KY ELS+Y   IVA E DR  RFE+
Sbjct: 144 IFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYTELSRYVEVIVAYESDRCCRFER 202

BLAST of Cla019549 vs. NCBI nr
Match: gi|659087174|ref|XP_008444312.1| (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = 1

Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           SE  SS P+    V  + F R A+ ++   R+  SD +K YG E+LK LGAT F+G  DP
Sbjct: 9   SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 68

Query: 62  VNAE-------------------KGRVDNVFTPEEGGRLVESNEEQKGRNRRISWDEFKK 121
            +AE                   K R+      +E    ++S    +   R + W  F+ 
Sbjct: 69  ADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGWLKSIIASRNDARTLYWQTFRG 128

Query: 122 AFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELSKYAITIVADEVDRYKRFEK 162
            F++KY    + +AK++EF++L Q S+ VAEY++KY ELS+Y   IVA E DR +RFE+
Sbjct: 129 IFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYTELSRYVEMIVASESDRCRRFER 187

BLAST of Cla019549 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1

Query: 2   SEGESSHPQAGVNVEEQIFTRIAERLAAGIRSVQSDPEKKYGTERLKALGATTFKGIADP 61
           S+ ESS P    N+EEQ+  R+A+RL +GIRS QSDPEKKYG ERLKALGATTF G  +P
Sbjct: 47  SDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNP 106

Query: 62  VNAE 66
            +AE
Sbjct: 107 ADAE 110

BLAST of Cla019549 vs. NCBI nr
Match: gi|659113911|ref|XP_008456815.1| (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = 1

Query: 42  YGTERLKALGATTFKGIADPVNAE-------------------KGRVDNVFTPEEGGRLV 101
           YG ERLK LGAT F+G  D  +A+                   K R+      +E     
Sbjct: 2   YGIERLKKLGATVFEGSTDLADADAWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 102 ESNEEQKGRNRRISWDEFKKAFQDKYCTKAFRDAKQNEFLKLVQRSMTVAEYKKKYIELS 161
           +S   +    R + W  F+  F++KY    + +AK++EFL+L Q S++VAEY+ KY ELS
Sbjct: 62  KSIIARCNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSVAEYEMKYTELS 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M5XSR7_PRUPE2.9e-1231.11Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1[more]
M5VK25_PRUPE8.3e-1233.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
M5Y283_PRUPE2.7e-1031.85Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1[more]
A0A0K9JUF1_9BURK3.9e-0943.75Uncharacterized protein OS=Candidatus Burkholderia humilis GN=BHUM_04587c PE=4 S... [more]
M5XAA1_PRUPE3.9e-0944.44Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|659116534|ref|XP_008458118.1|2.6e-3042.13PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659095113|ref|XP_008448403.1|3.1e-2037.43PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
gi|659087174|ref|XP_008444312.1|1.2e-1935.75PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
gi|659072264|ref|XP_008464580.1|1.7e-1364.06PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659113911|ref|XP_008456815.1|3.7e-1336.69PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019549Cla019549.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 88..152
score: 2.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019549Melon (DHL92) v3.6.1medwmB144
Cla019549Melon (DHL92) v3.6.1medwmB549
Cla019549Silver-seed gourdcarwmB0196
Cla019549Silver-seed gourdcarwmB0291
Cla019549Silver-seed gourdcarwmB0419
Cla019549Cucumber (Chinese Long) v3cucwmB030
Cla019549Cucumber (Chinese Long) v3cucwmB506
Cla019549Watermelon (97103) v2wmwmbB113
Cla019549Watermelon (97103) v2wmwmbB124
Cla019549Wax gourdwgowmB421
Cla019549Wax gourdwgowmB472
Cla019549Watermelon (97103) v1wmwmB084
Cla019549Cucumber (Gy14) v1cgywmB022
Cla019549Cucumber (Gy14) v1cgywmB271
Cla019549Cucurbita maxima (Rimu)cmawmB186
Cla019549Cucurbita maxima (Rimu)cmawmB370
Cla019549Cucurbita maxima (Rimu)cmawmB622
Cla019549Cucurbita maxima (Rimu)cmawmB819
Cla019549Cucurbita moschata (Rifu)cmowmB174
Cla019549Cucurbita moschata (Rifu)cmowmB362
Cla019549Cucurbita moschata (Rifu)cmowmB613
Cla019549Cucurbita moschata (Rifu)cmowmB809
Cla019549Melon (DHL92) v3.5.1mewmB147
Cla019549Melon (DHL92) v3.5.1mewmB562
Cla019549Watermelon (Charleston Gray)wcgwmB125
Cla019549Watermelon (Charleston Gray)wcgwmB223
Cla019549Cucumber (Chinese Long) v2cuwmB025
Cla019549Cucumber (Chinese Long) v2cuwmB480
Cla019549Cucurbita pepo (Zucchini)cpewmB024
Cla019549Cucurbita pepo (Zucchini)cpewmB069
Cla019549Cucurbita pepo (Zucchini)cpewmB478
Cla019549Cucurbita pepo (Zucchini)cpewmB508
Cla019549Bottle gourd (USVL1VR-Ls)lsiwmB136
Cla019549Bottle gourd (USVL1VR-Ls)lsiwmB188
Cla019549Cucumber (Gy14) v2cgybwmB027
Cla019549Cucumber (Gy14) v2cgybwmB451