Cla016022.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016022
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 6374623 .. 6374912 (+)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCGGACCGTGGCTACTAAGGACACGTCAACGAGAAGTTAGCTAA

mRNA sequence

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCGGACCGTGGCTACTAAGGACACGTCAACGAGAAGTTAGCTAA

Coding sequence (CDS)

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCGGACCGTGGCTACTAAGGACACGTCAACGAGAAGTTAGCTAA

Protein sequence

MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWLLRTRQREVS

Homology

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: M1CTX2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 44  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 103

Query: 61  LRTRQREVS 70
            R+R+ E++
Sbjct: 104 SRSREGELT 112

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: M1DAC5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: S8DAH6_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: A0A0D2ZV59_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: K4CT09_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.4e-26
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNAD GGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADAGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|527209902|gb|EPS74511.1| (hypothetical protein M569_00228 [Genlisea aurea])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|922378304|ref|XP_013459391.1| (hypothetical protein MTR_3g035635 [Medicago truncatula])

HSP 1 Score: 117.5 bits (293), Expect = 9.4e-24
Identity = 58/73 (79.45%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60
          MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1  MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

Query: 61 GPWLLRTRQREVS 70
               R R+ E++
Sbjct: 61 RDKGSRPREGELT 73

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|922328559|ref|XP_013443672.1| (hypothetical protein MTR_0002s0270 [Medicago truncatula])

HSP 1 Score: 117.5 bits (293), Expect = 9.4e-24
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGA GNADTGGAWLSSARATAG KPEEGED+ KSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGALGNADTGGAWLSSARATAGVKPEEGEDEAKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|703148675|ref|XP_010109405.1| (hypothetical protein L484_011969 [Morus notabilis])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAF NADTGGAWLSSAR TA DK EEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFRNADTGGAWLSSARTTADDKQEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|357467739|ref|XP_003604154.1| (ycf68 protein [Medicago truncatula])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 55/60 (91.67%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 57
          MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1  MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

The following BLAST results are available for this feature:

BLAST of Cla016022 vs. TrEMBL


Match Name	E-value	Identity	Description
M1CTX2_SOLTU	1.4e-26	85.51	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1	[more]
M1DAC5_SOLTU	1.4e-26	85.51	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1	[more]
S8DAH6_9LAMI	1.4e-26	85.51	Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1	[more]
A0A0D2ZV59_BRAOL	1.4e-26	85.51	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
K4CT09_SOLLC	5.4e-26	84.06	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cla016022 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|527209902\|gb\|EPS74511.1\|	2.0e-26	85.51	hypothetical protein M569_00228 [Genlisea aurea]	[more]
gi\|922378304\|ref\|XP_013459391.1\|	9.4e-24	79.45	hypothetical protein MTR_3g035635 [Medicago truncatula]	[more]
gi\|922328559\|ref\|XP_013443672.1\|	9.4e-24	79.71	hypothetical protein MTR_0002s0270 [Medicago truncatula]	[more]
gi\|703148675\|ref\|XP_010109405.1\|	2.7e-23	79.71	hypothetical protein L484_011969 [Morus notabilis]	[more]
gi\|357467739\|ref\|XP_003604154.1\|	2.7e-23	91.67	ycf68 protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla016022	Cla016022	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla016022	Cla016022.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla016022.1.cds1	Cla016022.1.cds1	CDS
Cla016022.1.cds2	Cla016022.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..69 score: 2.8
None	No IPR available	PANTHER	PTHR34890:SF2	SUBFAMILY NOT NAMED	coord: 1..69 score: 2.8