Cla016022 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016022
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 6374623 .. 6374912 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCGGACCGTGGCTACTAAGGACACGTCAACGAGAAGTTAGCTAA

mRNA sequence

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCGGACCGTGGCTACTAAGGACACGTCAACGAGAAGTTAGCTAA

Coding sequence (CDS)

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCGGACCGTGGCTACTAAGGACACGTCAACGAGAAGTTAGCTAA

Protein sequence

MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWLLRTRQREVS

Homology

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: M1CTX2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 44  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 103

Query: 61  LRTRQREVS 70
            R+R+ E++
Sbjct: 104 SRSREGELT 112

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: M1DAC5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: S8DAH6_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: A0A0D2ZV59_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. TrEMBL
Match: K4CT09_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.4e-26
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNAD GGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADAGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|527209902|gb|EPS74511.1| (hypothetical protein M569_00228 [Genlisea aurea])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|922378304|ref|XP_013459391.1| (hypothetical protein MTR_3g035635 [Medicago truncatula])

HSP 1 Score: 117.5 bits (293), Expect = 9.4e-24
Identity = 58/73 (79.45%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60
          MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1  MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

Query: 61 GPWLLRTRQREVS 70
               R R+ E++
Sbjct: 61 RDKGSRPREGELT 73

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|922328559|ref|XP_013443672.1| (hypothetical protein MTR_0002s0270 [Medicago truncatula])

HSP 1 Score: 117.5 bits (293), Expect = 9.4e-24
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGA GNADTGGAWLSSARATAG KPEEGED+ KSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGALGNADTGGAWLSSARATAGVKPEEGEDEAKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|703148675|ref|XP_010109405.1| (hypothetical protein L484_011969 [Morus notabilis])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGGPWL 60
          MPRILLKERGAF NADTGGAWLSSAR TA DK EEGEDDVKSSCPLCPGRHTCYNG    
Sbjct: 1  MPRILLKERGAFRNADTGGAWLSSARTTADDKQEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 61 LRTRQREVS 70
           R+R+ E++
Sbjct: 61 SRSREGELT 69

[Close]

BLAST of Cla016022 vs. NCBI nr
Match: gi|357467739|ref|XP_003604154.1| (ycf68 protein [Medicago truncatula])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 55/60 (91.67%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 57
          MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1  MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

The following BLAST results are available for this feature:

BLAST of Cla016022 vs. TrEMBL


Match Name	E-value	Identity	Description
M1CTX2_SOLTU	1.4e-26	85.51	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1	[more]
M1DAC5_SOLTU	1.4e-26	85.51	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1	[more]
S8DAH6_9LAMI	1.4e-26	85.51	Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1	[more]
A0A0D2ZV59_BRAOL	1.4e-26	85.51	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
K4CT09_SOLLC	5.4e-26	84.06	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cla016022 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|527209902\|gb\|EPS74511.1\|	2.0e-26	85.51	hypothetical protein M569_00228 [Genlisea aurea]	[more]
gi\|922378304\|ref\|XP_013459391.1\|	9.4e-24	79.45	hypothetical protein MTR_3g035635 [Medicago truncatula]	[more]
gi\|922328559\|ref\|XP_013443672.1\|	9.4e-24	79.71	hypothetical protein MTR_0002s0270 [Medicago truncatula]	[more]
gi\|703148675\|ref\|XP_010109405.1\|	2.7e-23	79.71	hypothetical protein L484_011969 [Morus notabilis]	[more]
gi\|357467739\|ref\|XP_003604154.1\|	2.7e-23	91.67	ycf68 protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016022	Cla016022.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..69 score: 2.8
None	No IPR available	PANTHER	PTHR34890:SF2	SUBFAMILY NOT NAMED	coord: 1..69 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016022	Cucumber (Gy14) v2	cgybwmB142
Cla016022	Cucumber (Gy14) v2	cgybwmB253
Cla016022	Cucumber (Gy14) v2	cgybwmB567
Cla016022	Melon (DHL92) v3.6.1	medwmB232
Cla016022	Melon (DHL92) v3.6.1	medwmB323
Cla016022	Melon (DHL92) v3.6.1	medwmB472
Cla016022	Melon (DHL92) v3.6.1	medwmB523
Cla016022	Melon (DHL92) v3.6.1	medwmB579
Cla016022	Silver-seed gourd	carwmB0198
Cla016022	Silver-seed gourd	carwmB0375
Cla016022	Silver-seed gourd	carwmB0799
Cla016022	Silver-seed gourd	carwmB0812
Cla016022	Cucumber (Chinese Long) v3	cucwmB279
Cla016022	Cucumber (Chinese Long) v3	cucwmB363
Cla016022	Cucumber (Chinese Long) v3	cucwmB635
Cla016022	Watermelon (97103) v2	wmwmbB306
Cla016022	Watermelon (97103) v2	wmwmbB317
Cla016022	Watermelon (97103) v2	wmwmbB343
Cla016022	Watermelon (97103) v2	wmwmbB348
Cla016022	Wax gourd	wgowmB233
Cla016022	Wax gourd	wgowmB273
Cla016022	Watermelon (97103) v1	wmwmB072
Cla016022	Watermelon (97103) v1	wmwmB131
Cla016022	Watermelon (97103) v1	wmwmB143
Cla016022	Cucumber (Gy14) v1	cgywmB427
Cla016022	Cucumber (Gy14) v1	cgywmB463
Cla016022	Cucurbita maxima (Rimu)	cmawmB127
Cla016022	Cucurbita maxima (Rimu)	cmawmB324
Cla016022	Cucurbita maxima (Rimu)	cmawmB503
Cla016022	Cucurbita maxima (Rimu)	cmawmB725
Cla016022	Cucurbita maxima (Rimu)	cmawmB842
Cla016022	Cucurbita moschata (Rifu)	cmowmB109
Cla016022	Cucurbita moschata (Rifu)	cmowmB319
Cla016022	Cucurbita moschata (Rifu)	cmowmB496
Cla016022	Cucurbita moschata (Rifu)	cmowmB721
Cla016022	Cucurbita moschata (Rifu)	cmowmB833
Cla016022	Melon (DHL92) v3.5.1	mewmB240
Cla016022	Melon (DHL92) v3.5.1	mewmB483
Cla016022	Melon (DHL92) v3.5.1	mewmB538
Cla016022	Melon (DHL92) v3.5.1	mewmB592
Cla016022	Watermelon (Charleston Gray)	wcgwmB162
Cla016022	Watermelon (Charleston Gray)	wcgwmB198
Cla016022	Watermelon (Charleston Gray)	wcgwmB305
Cla016022	Watermelon (Charleston Gray)	wcgwmB421
Cla016022	Cucumber (Chinese Long) v2	cuwmB270
Cla016022	Cucumber (Chinese Long) v2	cuwmB346
Cla016022	Cucumber (Chinese Long) v2	cuwmB605
Cla016022	Cucurbita pepo (Zucchini)	cpewmB233
Cla016022	Cucurbita pepo (Zucchini)	cpewmB268
Cla016022	Cucurbita pepo (Zucchini)	cpewmB453
Cla016022	Cucurbita pepo (Zucchini)	cpewmB665
Cla016022	Bottle gourd (USVL1VR-Ls)	lsiwmB164
Cla016022	Bottle gourd (USVL1VR-Ls)	lsiwmB268
Cla016022	Bottle gourd (USVL1VR-Ls)	lsiwmB380
Cla016022	Bottle gourd (USVL1VR-Ls)	lsiwmB492