Cla015175.1 (mRNA) Watermelon (97103) v1

NameCla015175
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionShort-chain dehydrogenase/reductase (Fragment) (AHRD V1 ***- Q2EFH2_9POAL); contains Interpro domain(s) IPR002198 Short-chain dehydrogenase/reductase SDR
LocationChr9 : 3743158 .. 3743594 (-)
Sequence length342
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACTTGACATTCTCTTCAATTCTAACGCTTGAAATCTCCAACTTTGACAACGTAATGGTGACCAATGTCCGTGGGGTATGTTTTATATATTGAAGCATGCAATTAACTCCAAATTTAAGTTGATGGGCTACAATATGTAAATTTTGTATTTTTTTCACTTTTTGGCAAAGGTGGTTGCGACGATCAAACACGCCGGACGAGTAACAGTAGAGAGAACGATACGAGGATCAATCATTTGTGCCGTGAGCGTGGCGGCGGTAAGTGCTTGGACAACACCATTAGCATACACAAACTCAAAGCATGCGATGTTGGGGGTAGTGAGGTCGAGCTGCGAGGAGCTCGAGGCGTATGGGATTAGGGTTAATTGCATTGTCACCGCAGGGGGTGGCGACGCGGTTGGCTTGTCGGGGTTTGAAGTTGGAAGAGAGTGA

mRNA sequence

ATGAAAAACTTGACATTCTCTTCAATTCTAACGCTTGAAATCTCCAACTTTGACAACGTAATGGTGACCAATGTCCGTGGGGTGGTTGCGACGATCAAACACGCCGGACGAGTAACAGTAGAGAGAACGATACGAGGATCAATCATTTGTGCCGTGAGCGTGGCGGCGGTAAGTGCTTGGACAACACCATTAGCATACACAAACTCAAAGCATGCGATGTTGGGGGTAGTGAGGTCGAGCTGCGAGGAGCTCGAGGCGTATGGGATTAGGGTTAATTGCATTGTCACCGCAGGGGGTGGCGACGCGGTTGGCTTGTCGGGGTTTGAAGTTGGAAGAGAGTGA

Coding sequence (CDS)

ATGAAAAACTTGACATTCTCTTCAATTCTAACGCTTGAAATCTCCAACTTTGACAACGTAATGGTGACCAATGTCCGTGGGGTGGTTGCGACGATCAAACACGCCGGACGAGTAACAGTAGAGAGAACGATACGAGGATCAATCATTTGTGCCGTGAGCGTGGCGGCGGTAAGTGCTTGGACAACACCATTAGCATACACAAACTCAAAGCATGCGATGTTGGGGGTAGTGAGGTCGAGCTGCGAGGAGCTCGAGGCGTATGGGATTAGGGTTAATTGCATTGTCACCGCAGGGGGTGGCGACGCGGTTGGCTTGTCGGGGTTTGAAGTTGGAAGAGAGTGA

Protein sequence

MKNLTFSSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAYTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAGGGDAVGLSGFEVGRE
BLAST of Cla015175 vs. Swiss-Prot
Match: SDR3B_ARATH (Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana GN=SDR3b PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-18
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 1

Query: 6   FSSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLA 65
           F SIL L ++  D  +  N+RG  A IKHA R  VE+ IRGSI+C  SVAA  A T P  
Sbjct: 97  FVSILDLNLNELDRTIAINLRGTAAFIKHAARAMVEKGIRGSIVCTTSVAAEIAGTAPHG 156

Query: 66  YTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAGGGDAVGLSGFEV 111
           YT SKH +LG+++S+   L  YGIRVN +   G    +  +GF++
Sbjct: 157 YTTSKHGLLGLIKSASGGLGKYGIRVNGVAPFGVATPLVCNGFKM 201

BLAST of Cla015175 vs. Swiss-Prot
Match: SDR4_ARATH (Short-chain dehydrogenase reductase 4 OS=Arabidopsis thaliana GN=SDR4 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.4e-18
Identity = 46/93 (49.46%), Postives = 55/93 (59.14%), Query Frame = 1

Query: 6   FSSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLA 65
           F S+L L++  FD  M  NVRG  A IKHA R  V    RGSI+C  S+AA      P +
Sbjct: 135 FGSVLDLDLEAFDRTMAVNVRGAAAFIKHAARSMVASGTRGSIVCTTSIAAEIGGPGPHS 194

Query: 66  YTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           YT SKHA+LG++RS+C  L  YGIRVN +   G
Sbjct: 195 YTASKHALLGLIRSACAGLGQYGIRVNGVAPYG 227

BLAST of Cla015175 vs. Swiss-Prot
Match: SDR3A_ARATH (Short-chain dehydrogenase reductase 3a OS=Arabidopsis thaliana GN=SDR3a PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = 1

Query: 8   SILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAYT 67
           S L L +  FD  M  NVRG  A IKHA R  VE+  RGSI+C  SVA+      P AYT
Sbjct: 99  SFLDLNLEQFDRTMAVNVRGAAAFIKHAARAMVEKGTRGSIVCTTSVASEIGGPGPHAYT 158

Query: 68  NSKHAMLGVVRSSCEELEAYGIRVN 93
            SKHA+LG+V+S+C  L  YGIRVN
Sbjct: 159 ASKHALLGLVKSACGGLGKYGIRVN 183

BLAST of Cla015175 vs. Swiss-Prot
Match: SDR5_ARATH (Short-chain dehydrogenase reductase 5 OS=Arabidopsis thaliana GN=SDR5 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-17
Identity = 51/101 (50.50%), Postives = 59/101 (58.42%), Query Frame = 1

Query: 8   SILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAYT 67
           SIL L++  FD  M  NVRG  A IKHA R  V    RGSI+C  SV A      P +YT
Sbjct: 99  SILDLDLEAFDRTMAVNVRGAAAFIKHAARSMVASGTRGSIVCTTSVTAEIGGPGPHSYT 158

Query: 68  NSKHAMLGVVRSSCEELEAYGIRVNCIVTAGGGDAVGLSGF 109
            SKHA+LG+VRS+C  L  YGIRVN +  A  G A GL+ +
Sbjct: 159 ASKHALLGLVRSACGGLGKYGIRVNGV--APYGVATGLTSY 197

BLAST of Cla015175 vs. Swiss-Prot
Match: SDR3C_ARATH (Short-chain dehydrogenase reductase 3c OS=Arabidopsis thaliana GN=SDR3c PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.7e-15
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 1

Query: 8   SILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAYT 67
           S L  ++  FD +M  NVRG  A IKHA R  VE+  RGSI+C  SV+A         YT
Sbjct: 99  SFLDFDLERFDRIMAVNVRGAAAFIKHAARAMVEKGTRGSIVCTTSVSA-EIGGGHHGYT 158

Query: 68  NSKHAMLGVVRSSCEELEAYGIRVN 93
            SKH ++G++RS+C +L  YGIRVN
Sbjct: 159 ASKHGLVGLIRSACGDLGKYGIRVN 182

BLAST of Cla015175 vs. TrEMBL
Match: A0A0A0K5W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414470 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-27
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 7   SSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAY 66
           SSILTL++S FDN+M TNVRG+VATIKHAG+V +ER IRGSIIC  SVA+V A   PLAY
Sbjct: 99  SSILTLDMSEFDNIMATNVRGIVATIKHAGQVMIERKIRGSIICMASVASVVA-GAPLAY 158

Query: 67  TNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           T+SKHA+LGVVRSSC EL  YGIRVNC+   G
Sbjct: 159 TSSKHAVLGVVRSSCLELGVYGIRVNCVSPYG 189

BLAST of Cla015175 vs. TrEMBL
Match: A0A0A0K851_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414460 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-24
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1

Query: 5   TFSSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPL 64
           + SSI  L++ +FDNVM TNVRGVVATIKH GR  VER IRGSIIC  SVAA       +
Sbjct: 97  SLSSIRELDMFDFDNVMTTNVRGVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALM 156

Query: 65  AYTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           AYT SKHA+LGVVRSSC EL  YGIRVNC+   G
Sbjct: 157 AYTCSKHAVLGVVRSSCAELGVYGIRVNCVSPNG 190

BLAST of Cla015175 vs. TrEMBL
Match: A0A0A0KBA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414480 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-24
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 1

Query: 5   TFSSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPL 64
           T SSIL L++SNFDNV+ TNVRGV+ATIKHAGR  V++ IRGSI+C  S AA+ ++   L
Sbjct: 98  TPSSILELDMSNFDNVISTNVRGVLATIKHAGRAMVKQKIRGSIVCTGSTAALISFNPSL 157

Query: 65  -AYTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
            AYT+SKHA+LG+VRSSCEEL  YGIRVNC+   G
Sbjct: 158 TAYTSSKHAVLGLVRSSCEELGMYGIRVNCVSPHG 192

BLAST of Cla015175 vs. TrEMBL
Match: A0A0A0K9K9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414490 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-24
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1

Query: 7   SSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAA-VSAWTTPLA 66
           S+IL L++SNFDNVM TNVRGVVATIKHAGR  V++ IRGSIIC  S  A ++   + ++
Sbjct: 100 STILDLDMSNFDNVMSTNVRGVVATIKHAGRAMVKQNIRGSIICIASTGAQIAVNLSYMS 159

Query: 67  YTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAGGGDAVGLSGFEV 111
           Y +SKHA+LGVVR+SC EL AYGIRVNC+   G   A+ + G ++
Sbjct: 160 YISSKHAVLGVVRTSCGELGAYGIRVNCVSPHGVATAMSIQGLKL 204

BLAST of Cla015175 vs. TrEMBL
Match: B9I9D8_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s11070g PE=4 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-23
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 1

Query: 7   SSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAY 66
           + IL L+I  FDN M TNVRGV ATIKHA R  V + IRGSIIC  SVA+  A T P AY
Sbjct: 93  TGILELDIEGFDNTMATNVRGVAATIKHAARAMVSKNIRGSIICTTSVASSLAGTGPHAY 152

Query: 67  TNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           T SKHA++G+VR++C EL AYGIRVNCI   G
Sbjct: 153 TTSKHALVGLVRAACSELGAYGIRVNCISPYG 184

BLAST of Cla015175 vs. NCBI nr
Match: gi|449436383|ref|XP_004135972.1| (PREDICTED: short-chain dehydrogenase reductase 3b-like isoform X1 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 6.7e-27
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 7   SSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAY 66
           SSILTL++S FDN+M TNVRG+VATIKHAG+V +ER IRGSIIC  SVA+V A   PLAY
Sbjct: 99  SSILTLDMSEFDNIMATNVRGIVATIKHAGQVMIERKIRGSIICMASVASVVA-GAPLAY 158

Query: 67  TNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           T+SKHA+LGVVRSSC EL  YGIRVNC+   G
Sbjct: 159 TSSKHAVLGVVRSSCLELGVYGIRVNCVSPYG 189

BLAST of Cla015175 vs. NCBI nr
Match: gi|778728359|ref|XP_011659411.1| (PREDICTED: short-chain dehydrogenase reductase 3b-like isoform X2 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 6.7e-27
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 7   SSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAY 66
           SSILTL++S FDN+M TNVRG+VATIKHAG+V +ER IRGSIIC  SVA+V A   PLAY
Sbjct: 97  SSILTLDMSEFDNIMATNVRGIVATIKHAGQVMIERKIRGSIICMASVASVVA-GAPLAY 156

Query: 67  TNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           T+SKHA+LGVVRSSC EL  YGIRVNC+   G
Sbjct: 157 TSSKHAVLGVVRSSCLELGVYGIRVNCVSPYG 187

BLAST of Cla015175 vs. NCBI nr
Match: gi|720084271|ref|XP_010243159.1| (PREDICTED: short-chain dehydrogenase reductase 3b-like [Nelumbo nucifera])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 1

Query: 7   SSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPLAY 66
           SSIL +++ +FDN MVTNVRGV +TIKHAGR  VER IRGSIIC  SVAA    + P AY
Sbjct: 98  SSILDMDMEDFDNTMVTNVRGVASTIKHAGRAMVERKIRGSIICTASVAAALGGSAPHAY 157

Query: 67  TNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           T SKHA++G+VRS+C EL A+GIRVNCI   G
Sbjct: 158 TTSKHALVGLVRSACSELGAHGIRVNCISPFG 189

BLAST of Cla015175 vs. NCBI nr
Match: gi|659122936|ref|XP_008461400.1| (PREDICTED: short-chain dehydrogenase reductase 3b-like isoform X1 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 3.1e-24
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 1

Query: 7   SSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAA-VSAWTTPLA 66
           S+IL L++SNFDNVM TNVRGVVATIKHAGR  V++ IRGSIIC  S AA ++   + ++
Sbjct: 100 STILDLDMSNFDNVMSTNVRGVVATIKHAGRAMVKQNIRGSIICIASTAAQIAVNLSYMS 159

Query: 67  YTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAGGGDAVGLSGFEV 111
           YT+SKHA+LGVVR+SC EL AYGIRVNC+   G    + + G  +
Sbjct: 160 YTSSKHAVLGVVRTSCGELGAYGIRVNCVSPHGVATTMTMKGLNL 204

BLAST of Cla015175 vs. NCBI nr
Match: gi|778728353|ref|XP_004136145.2| (PREDICTED: short-chain dehydrogenase reductase 3b-like [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 3.1e-24
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1

Query: 5   TFSSILTLEISNFDNVMVTNVRGVVATIKHAGRVTVERTIRGSIICAVSVAAVSAWTTPL 64
           + SSI  L++ +FDNVM TNVRGVVATIKH GR  VER IRGSIIC  SVAA       +
Sbjct: 97  SLSSIRELDMFDFDNVMTTNVRGVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALM 156

Query: 65  AYTNSKHAMLGVVRSSCEELEAYGIRVNCIVTAG 99
           AYT SKHA+LGVVRSSC EL  YGIRVNC+   G
Sbjct: 157 AYTCSKHAVLGVVRSSCAELGVYGIRVNCVSPNG 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SDR3B_ARATH2.0e-1845.71Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana GN=SDR3b PE=2 SV=... [more]
SDR4_ARATH7.4e-1849.46Short-chain dehydrogenase reductase 4 OS=Arabidopsis thaliana GN=SDR4 PE=2 SV=1[more]
SDR3A_ARATH1.7e-1754.12Short-chain dehydrogenase reductase 3a OS=Arabidopsis thaliana GN=SDR3a PE=2 SV=... [more]
SDR5_ARATH2.2e-1750.50Short-chain dehydrogenase reductase 5 OS=Arabidopsis thaliana GN=SDR5 PE=3 SV=1[more]
SDR3C_ARATH7.7e-1548.24Short-chain dehydrogenase reductase 3c OS=Arabidopsis thaliana GN=SDR3c PE=3 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0K5W0_CUCSA4.7e-2771.74Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414470 PE=4 SV=1[more]
A0A0A0K851_CUCSA2.2e-2465.96Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414460 PE=4 SV=1[more]
A0A0A0KBA9_CUCSA3.7e-2465.26Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414480 PE=4 SV=1[more]
A0A0A0K9K9_CUCSA4.8e-2458.10Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414490 PE=4 SV=1[more]
B9I9D8_POPTR3.1e-2363.04Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s11070g P... [more]
Match NameE-valueIdentityDescription
gi|449436383|ref|XP_004135972.1|6.7e-2771.74PREDICTED: short-chain dehydrogenase reductase 3b-like isoform X1 [Cucumis sativ... [more]
gi|778728359|ref|XP_011659411.1|6.7e-2771.74PREDICTED: short-chain dehydrogenase reductase 3b-like isoform X2 [Cucumis sativ... [more]
gi|720084271|ref|XP_010243159.1|1.1e-2465.22PREDICTED: short-chain dehydrogenase reductase 3b-like [Nelumbo nucifera][more]
gi|659122936|ref|XP_008461400.1|3.1e-2459.05PREDICTED: short-chain dehydrogenase reductase 3b-like isoform X1 [Cucumis melo][more]
gi|778728353|ref|XP_004136145.2|3.1e-2465.96PREDICTED: short-chain dehydrogenase reductase 3b-like [Cucumis sativus][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla015175Cla015175gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla015175Cla015175.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla015175.1.cds2Cla015175.1.cds2CDS
Cla015175.1.cds1Cla015175.1.cds1CDS


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPANTHERPTHR24322FAMILY NOT NAMEDcoord: 4..50
score: 8.1E-29coord: 66..98
score: 8.1
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 7..95
score: 3.5
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 6..95
score: 8.89
NoneNo IPR availablePANTHERPTHR24322:SF498SUBFAMILY NOT NAMEDcoord: 4..50
score: 8.1E-29coord: 66..98
score: 8.1
NoneNo IPR availablePFAMPF13561adh_short_C2coord: 7..95
score: 3.6