Cla014305.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014305
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 29886271 .. 29886636 (+)
Sequence length	366

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAATTGAAAGGGGCGTCAACTTCAGAAGGGAGTCAGCCACTTTCACAAGAAGAAATATGCAAGATGGTGTTGGGAAGACGGCCAGGACATGTTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATACCTCCTCATTATCGATTGAGTCTATACAACATAGAGGGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGAACAACTTGAAGAACAAAAGGCAGAGATTCAACAAGAGAGAGAAGCAAGAAATGCAATGAGGGCAGAACTTATGGCAACGAAGGTAGAGATAGACATTCTGAAAGAAATGATGAAACAATTTATGGATTCACAGGGAGTACTTTCAAACTAG

mRNA sequence

ATGTTGGAATTGAAAGGGGCGTCAACTTCAGAAGGGAGTCAGCCACTTTCACAAGAAGAAATATGCAAGATGGTGTTGGGAAGACGGCCAGGACATGTTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATACCTCCTCATTATCGATTGAGTCTATACAACATAGAGGGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGAACAACTTGAAGAACAAAAGGCAGAGATTCAACAAGAGAGAGAAGCAAGAAATGCAATGAGGGCAGAACTTATGGCAACGAAGGTAGAGATAGACATTCTGAAAGAAATGATGAAACAATTTATGGATTCACAGGGAGTACTTTCAAACTAG

Coding sequence (CDS)

ATGTTGGAATTGAAAGGGGCGTCAACTTCAGAAGGGAGTCAGCCACTTTCACAAGAAGAAATATGCAAGATGGTGTTGGGAAGACGGCCAGGACATGTTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATACCTCCTCATTATCGATTGAGTCTATACAACATAGAGGGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGAACAACTTGAAGAACAAAAGGCAGAGATTCAACAAGAGAGAGAAGCAAGAAATGCAATGAGGGCAGAACTTATGGCAACGAAGGTAGAGATAGACATTCTGAAAGAAATGATGAAACAATTTATGGATTCACAGGGAGTACTTTCAAACTAG

Protein sequence

MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRGFEQVIEIQNLKEQLEEQKAEIQQEREARNAMRAELMATKVEIDILKEMMKQFMDSQGVLSN

Homology

[Close]

BLAST of Cla014305 vs. TrEMBL
Match: F6HAB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g00610 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-07
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
           MLEL+     EG Q L + EIC  VLG R G++KGLG GP+P     +SS       HR 
Sbjct: 35  MLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRPP----SSSSKSTHKSHRE 94

Query: 61  FEQVIEIQNLKEQLEEQKAEIQQER 86
            E   E++  +E L+ Q+ +IQ ++
Sbjct: 95  IELENELKATRELLQSQETQIQHQQ 115

[Close]

BLAST of Cla014305 vs. TrEMBL
Match: A5AEV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018031 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 1    MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
            MLEL+     EG Q L + EIC  VLG R G++KGLG GP+P     +SS       HR 
Sbjct: 1177 MLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRPP----SSSSKSTHKSHRE 1236

Query: 61   FEQVIEIQNLKEQLEEQKAEIQQER 86
             E   E++  +E L+ Q+  IQ ++
Sbjct: 1237 IELENELKATRELLQSQETRIQHQQ 1257

[Close]

BLAST of Cla014305 vs. TrEMBL
Match: W5HS17_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 37/113 (32.74%), Postives = 65/113 (57.52%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
           ML+ +     EG  PL++++IC+ VLG+  G+++G G GPKP  R Y+S+ S  S QH  
Sbjct: 149 MLQKQKEPIEEGEVPLTEQQICEHVLGKAYGYIRGRGHGPKPNRRAYSSASS--STQH-- 208

Query: 61  FEQVIEIQNLKEQLEEQKAEIQQEREARNAMRAELMATKVEIDILKEMMKQFM 114
              V E+ + KE +  Q+ +I+       A +++L A + +ID L+ ++   +
Sbjct: 209 --VVEELASTKEIVATQQTQIE-------AQQSQLEAQQKKIDWLQNVVSNLV 248

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|659071971|ref|XP_008462851.1| (PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 1  MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
          MLELK     +GSQPL ++EIC  VLGRRPG+ KGLG GPKPK R+ +S+ S  +   + 
Sbjct: 1  MLELKSQPIPKGSQPLFEDEICDQVLGRRPGYSKGLGCGPKPKARRTSSANSSSTSSSQS 60

Query: 61 FEQVIEIQ-NLKEQLEEQKAEIQQEREARNAMRAE 95
           ++ IE+Q  L E LE  + E+Q       A + E
Sbjct: 61 NQKEIELQAKLHEALE--RIEVQDRNHQALASQVE 93

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|731417062|ref|XP_010660148.1| (PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKP----KPRKYTSSLSIESI 60
           MLEL+    +EG+  +++ +IC+ VLG++ G+VKGLG+GPKP    K R  +S   IE +
Sbjct: 186 MLELQRQPIAEGAVAMTEAKICERVLGQKSGYVKGLGFGPKPISFSKSRPSSSEREIE-L 245

Query: 61  QHRGFEQVIEIQNLKEQLEEQKAEIQQ 84
           +HR  E  + ++  ++QLE Q+  I Q
Sbjct: 246 EHRLVETQLLVETQQQQLETQQDRIDQ 271

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|147809585|emb|CAN64494.1| (hypothetical protein VITISV_018031 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 1    MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
            MLEL+     EG Q L + EIC  VLG R G++KGLG GP+P     +SS       HR 
Sbjct: 1177 MLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRPP----SSSSKSTHKSHRE 1236

Query: 61   FEQVIEIQNLKEQLEEQKAEIQQER 86
             E   E++  +E L+ Q+  IQ ++
Sbjct: 1237 IELENELKATRELLQSQETRIQHQQ 1257

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|659082629|ref|XP_008441946.1| (PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.1e-06
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICK-MVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESI--Q 60
           MLEL+   T EGSQPL  +EIC+ +VL RRP + KGLG GP PK RK TS  S  ++  Q
Sbjct: 243 MLELQPQPTPEGSQPLYGDEICETIVLSRRPSYSKGLGCGPNPKSRKMTSVSSSSTMFSQ 302

Query: 61  HRGFE 63
            R +E
Sbjct: 303 AREYE 307

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|659092969|ref|XP_008447319.1| (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.1e-06
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 9  TSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLS---------IESIQHR 68
          T EG+QPLS +EI + +L RR G+ KGLGWGPKPK  K TS+ S         IE     
Sbjct: 13 TLEGNQPLSGDEIYETMLDRRSGNSKGLGWGPKPKACKMTSASSSMTSCPQSIIELQLQA 72

Query: 69 GFEQVIEIQNLKEQLEEQKAEIQQER 86
           F+Q   +Q ++EQ    +A+ ++E+
Sbjct: 73 KFDQA--MQQIEEQTRNHEAKERKEK 96

The following BLAST results are available for this feature:

BLAST of Cla014305 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HAB8_VITVI	7.5e-07	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g00610 PE=4 SV=...	[more]
A5AEV7_VITVI	1.3e-06	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018031 PE=4 SV=1	[more]
W5HS17_WHEAT	3.7e-06	32.74	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]

BLAST of Cla014305 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071971\|ref\|XP_008462851.1\|	1.2e-10	45.26	PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo]	[more]
gi\|731417062\|ref\|XP_010660148.1\|	2.8e-07	40.23	PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera]	[more]
gi\|147809585\|emb\|CAN64494.1\|	1.8e-06	40.00	hypothetical protein VITISV_018031 [Vitis vinifera]	[more]
gi\|659082629\|ref\|XP_008441946.1\|	4.1e-06	53.85	PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo]	[more]
gi\|659092969\|ref\|XP_008447319.1\|	4.1e-06	41.86	PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla014305	Cla014305	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla014305	Cla014305.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla014305.1.cds1	Cla014305.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 64..101 scor