Cla014305 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014305
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 29886271 .. 29886636 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAATTGAAAGGGGCGTCAACTTCAGAAGGGAGTCAGCCACTTTCACAAGAAGAAATATGCAAGATGGTGTTGGGAAGACGGCCAGGACATGTTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATACCTCCTCATTATCGATTGAGTCTATACAACATAGAGGGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGAACAACTTGAAGAACAAAAGGCAGAGATTCAACAAGAGAGAGAAGCAAGAAATGCAATGAGGGCAGAACTTATGGCAACGAAGGTAGAGATAGACATTCTGAAAGAAATGATGAAACAATTTATGGATTCACAGGGAGTACTTTCAAACTAG

mRNA sequence

ATGTTGGAATTGAAAGGGGCGTCAACTTCAGAAGGGAGTCAGCCACTTTCACAAGAAGAAATATGCAAGATGGTGTTGGGAAGACGGCCAGGACATGTTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATACCTCCTCATTATCGATTGAGTCTATACAACATAGAGGGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGAACAACTTGAAGAACAAAAGGCAGAGATTCAACAAGAGAGAGAAGCAAGAAATGCAATGAGGGCAGAACTTATGGCAACGAAGGTAGAGATAGACATTCTGAAAGAAATGATGAAACAATTTATGGATTCACAGGGAGTACTTTCAAACTAG

Coding sequence (CDS)

ATGTTGGAATTGAAAGGGGCGTCAACTTCAGAAGGGAGTCAGCCACTTTCACAAGAAGAAATATGCAAGATGGTGTTGGGAAGACGGCCAGGACATGTTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATACCTCCTCATTATCGATTGAGTCTATACAACATAGAGGGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGAACAACTTGAAGAACAAAAGGCAGAGATTCAACAAGAGAGAGAAGCAAGAAATGCAATGAGGGCAGAACTTATGGCAACGAAGGTAGAGATAGACATTCTGAAAGAAATGATGAAACAATTTATGGATTCACAGGGAGTACTTTCAAACTAG

Protein sequence

MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRGFEQVIEIQNLKEQLEEQKAEIQQEREARNAMRAELMATKVEIDILKEMMKQFMDSQGVLSN

Homology

[Close]

BLAST of Cla014305 vs. TrEMBL
Match: F6HAB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g00610 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-07
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
           MLEL+     EG Q L + EIC  VLG R G++KGLG GP+P     +SS       HR 
Sbjct: 35  MLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRPP----SSSSKSTHKSHRE 94

Query: 61  FEQVIEIQNLKEQLEEQKAEIQQER 86
            E   E++  +E L+ Q+ +IQ ++
Sbjct: 95  IELENELKATRELLQSQETQIQHQQ 115

[Close]

BLAST of Cla014305 vs. TrEMBL
Match: A5AEV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018031 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 1    MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
            MLEL+     EG Q L + EIC  VLG R G++KGLG GP+P     +SS       HR 
Sbjct: 1177 MLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRPP----SSSSKSTHKSHRE 1236

Query: 61   FEQVIEIQNLKEQLEEQKAEIQQER 86
             E   E++  +E L+ Q+  IQ ++
Sbjct: 1237 IELENELKATRELLQSQETRIQHQQ 1257

[Close]

BLAST of Cla014305 vs. TrEMBL
Match: W5HS17_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 37/113 (32.74%), Postives = 65/113 (57.52%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
           ML+ +     EG  PL++++IC+ VLG+  G+++G G GPKP  R Y+S+ S  S QH  
Sbjct: 149 MLQKQKEPIEEGEVPLTEQQICEHVLGKAYGYIRGRGHGPKPNRRAYSSASS--STQH-- 208

Query: 61  FEQVIEIQNLKEQLEEQKAEIQQEREARNAMRAELMATKVEIDILKEMMKQFM 114
              V E+ + KE +  Q+ +I+       A +++L A + +ID L+ ++   +
Sbjct: 209 --VVEELASTKEIVATQQTQIE-------AQQSQLEAQQKKIDWLQNVVSNLV 248

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|659071971|ref|XP_008462851.1| (PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 1  MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
          MLELK     +GSQPL ++EIC  VLGRRPG+ KGLG GPKPK R+ +S+ S  +   + 
Sbjct: 1  MLELKSQPIPKGSQPLFEDEICDQVLGRRPGYSKGLGCGPKPKARRTSSANSSSTSSSQS 60

Query: 61 FEQVIEIQ-NLKEQLEEQKAEIQQEREARNAMRAE 95
           ++ IE+Q  L E LE  + E+Q       A + E
Sbjct: 61 NQKEIELQAKLHEALE--RIEVQDRNHQALASQVE 93

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|731417062|ref|XP_010660148.1| (PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKP----KPRKYTSSLSIESI 60
           MLEL+    +EG+  +++ +IC+ VLG++ G+VKGLG+GPKP    K R  +S   IE +
Sbjct: 186 MLELQRQPIAEGAVAMTEAKICERVLGQKSGYVKGLGFGPKPISFSKSRPSSSEREIE-L 245

Query: 61  QHRGFEQVIEIQNLKEQLEEQKAEIQQ 84
           +HR  E  + ++  ++QLE Q+  I Q
Sbjct: 246 EHRLVETQLLVETQQQQLETQQDRIDQ 271

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|147809585|emb|CAN64494.1| (hypothetical protein VITISV_018031 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 1    MLELKGASTSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESIQHRG 60
            MLEL+     EG Q L + EIC  VLG R G++KGLG GP+P     +SS       HR 
Sbjct: 1177 MLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRPP----SSSSKSTHKSHRE 1236

Query: 61   FEQVIEIQNLKEQLEEQKAEIQQER 86
             E   E++  +E L+ Q+  IQ ++
Sbjct: 1237 IELENELKATRELLQSQETRIQHQQ 1257

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|659082629|ref|XP_008441946.1| (PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.1e-06
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 1   MLELKGASTSEGSQPLSQEEICK-MVLGRRPGHVKGLGWGPKPKPRKYTSSLSIESI--Q 60
           MLEL+   T EGSQPL  +EIC+ +VL RRP + KGLG GP PK RK TS  S  ++  Q
Sbjct: 243 MLELQPQPTPEGSQPLYGDEICETIVLSRRPSYSKGLGCGPNPKSRKMTSVSSSSTMFSQ 302

Query: 61  HRGFE 63
            R +E
Sbjct: 303 AREYE 307

[Close]

BLAST of Cla014305 vs. NCBI nr
Match: gi|659092969|ref|XP_008447319.1| (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.1e-06
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 9  TSEGSQPLSQEEICKMVLGRRPGHVKGLGWGPKPKPRKYTSSLS---------IESIQHR 68
          T EG+QPLS +EI + +L RR G+ KGLGWGPKPK  K TS+ S         IE     
Sbjct: 13 TLEGNQPLSGDEIYETMLDRRSGNSKGLGWGPKPKACKMTSASSSMTSCPQSIIELQLQA 72

Query: 69 GFEQVIEIQNLKEQLEEQKAEIQQER 86
           F+Q   +Q ++EQ    +A+ ++E+
Sbjct: 73 KFDQA--MQQIEEQTRNHEAKERKEK 96

The following BLAST results are available for this feature:

BLAST of Cla014305 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HAB8_VITVI	7.5e-07	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g00610 PE=4 SV=...	[more]
A5AEV7_VITVI	1.3e-06	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018031 PE=4 SV=1	[more]
W5HS17_WHEAT	3.7e-06	32.74	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]

BLAST of Cla014305 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071971\|ref\|XP_008462851.1\|	1.2e-10	45.26	PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo]	[more]
gi\|731417062\|ref\|XP_010660148.1\|	2.8e-07	40.23	PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera]	[more]
gi\|147809585\|emb\|CAN64494.1\|	1.8e-06	40.00	hypothetical protein VITISV_018031 [Vitis vinifera]	[more]
gi\|659082629\|ref\|XP_008441946.1\|	4.1e-06	53.85	PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo]	[more]
gi\|659092969\|ref\|XP_008447319.1\|	4.1e-06	41.86	PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014305	Cla014305.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 64..101 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014305	Cucurbita pepo (Zucchini)	cpewmB073
Cla014305	Cucurbita pepo (Zucchini)	cpewmB230
Cla014305	Cucurbita pepo (Zucchini)	cpewmB282
Cla014305	Cucurbita pepo (Zucchini)	cpewmB482
Cla014305	Cucurbita pepo (Zucchini)	cpewmB577
Cla014305	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla014305	Bottle gourd (USVL1VR-Ls)	lsiwmB322
Cla014305	Bottle gourd (USVL1VR-Ls)	lsiwmB453
Cla014305	Bottle gourd (USVL1VR-Ls)	lsiwmB490
Cla014305	Cucumber (Gy14) v2	cgybwmB247
Cla014305	Cucumber (Gy14) v2	cgybwmB129
Cla014305	Cucumber (Gy14) v2	cgybwmB242
Cla014305	Cucumber (Gy14) v2	cgybwmB468
Cla014305	Melon (DHL92) v3.6.1	medwmB102
Cla014305	Melon (DHL92) v3.6.1	medwmB468
Cla014305	Melon (DHL92) v3.6.1	medwmB559
Cla014305	Silver-seed gourd	carwmB0333
Cla014305	Silver-seed gourd	carwmB0407
Cla014305	Silver-seed gourd	carwmB0426
Cla014305	Silver-seed gourd	carwmB0642
Cla014305	Silver-seed gourd	carwmB0984
Cla014305	Cucumber (Chinese Long) v3	cucwmB149
Cla014305	Cucumber (Chinese Long) v3	cucwmB266
Cla014305	Cucumber (Chinese Long) v3	cucwmB272
Cla014305	Cucumber (Chinese Long) v3	cucwmB526
Cla014305	Watermelon (97103) v2	wmwmbB234
Cla014305	Watermelon (97103) v2	wmwmbB253
Cla014305	Watermelon (97103) v2	wmwmbB283
Cla014305	Wax gourd	wgowmB432
Cla014305	Watermelon (97103) v1	wmwmB048
Cla014305	Watermelon (97103) v1	wmwmB069
Cla014305	Cucumber (Gy14) v1	cgywmB026
Cla014305	Cucumber (Gy14) v1	cgywmB587
Cla014305	Cucurbita maxima (Rimu)	cmawmB169
Cla014305	Cucurbita maxima (Rimu)	cmawmB632
Cla014305	Cucurbita maxima (Rimu)	cmawmB761
Cla014305	Cucurbita maxima (Rimu)	cmawmB826
Cla014305	Cucurbita moschata (Rifu)	cmowmB153
Cla014305	Cucurbita moschata (Rifu)	cmowmB315
Cla014305	Cucurbita moschata (Rifu)	cmowmB511
Cla014305	Cucurbita moschata (Rifu)	cmowmB623
Cla014305	Cucurbita moschata (Rifu)	cmowmB816
Cla014305	Melon (DHL92) v3.5.1	mewmB476
Cla014305	Melon (DHL92) v3.5.1	mewmB570
Cla014305	Watermelon (Charleston Gray)	wcgwmB072
Cla014305	Watermelon (Charleston Gray)	wcgwmB141
Cla014305	Watermelon (Charleston Gray)	wcgwmB420
Cla014305	Cucumber (Chinese Long) v2	cuwmB261
Cla014305	Cucumber (Chinese Long) v2	cuwmB500