Cla013542.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013542
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ATP synthase protein I (AHRD V1 **-- O82279_ARATH)
Location	Chr2 : 28199322 .. 28200426 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGGGAGTAGCGTGGATTCTCTGGCAGATGGAGCAAAAGGACTTGTTAAGTATGTATTACACAACTCTTTTTTTGTTACAGTTGAATGTTGATGATTTTCACTAAATCATTTTGTATTCTATTTCTTTCTCATAAGATTATGGTACAAGCCATGGTGAATTACTGTGATGTTCGTTCTGAAGTATATGGACTGTATGGTGCACCTTGGATTTTCTTTCATTTTTTATTAATAAAAGTTTGGTTTCTCATTTTCTTAAAAAGAAAACAGAAAAAAGAAAAGAAAAGACAAATATGTTGCATCCCCAAGCATCAAGATGTTTTAGGACAAATCTTTATAGATACTTCACAATTCATCTTGTTGATACAGGTGGTGATTTGAGAGTTTATTTCCATAACATGAAGTTTGATTCTATACATTCTATGTTGATAATTCTTTGTACCAGTATAACGGAATACTGATTTAATTTTTTCTTGAAGAACGAGACTGAACTTGTTGGATTTCATGTCATCTTAAAGAAATCATTGCAATTTCGTTGCAGGGGAGCTGTTGCACAACCACGGTTATTAGTTCCAGTCATATTGGTTATGGTATATAACCGTTGGAACGGGTAAGTATGCTCACTACCTTGTTAGTTTTGGCAATTTTCCCCTTCTATATGGCCACTATAAGCATTCACACCCATTACCAAAACATTCATTCTCTCTCTCTTGTCGTCTAGTATTATTTTTAAACTGAATTTTTTTCAAGGAAATGAAAACGTACATACGAAGAGATGTGAATCCTGTAGGTCCCCATTACTGATTGTGTACTTTTTTTTTTCTTTTTCTTTTTGAATAAAGCATGGTCTTACTCTTGATTGACACCACAGACTTTGAATTTAGAATGTGAAATCAACAAAACATTTTAGCAGGCACAGCTGGGGTTCTAATTACCCACATTTTCTTATCCTTTTTCTTTGTAGTATTCTTGTCGAAGATTATGGAGTTATGCATTTACAGTTGATACCAATGCTAGTTGGATTCTTCACGTACAAGGTTGCTACTTTTGTTCAAGCTTTAGAGGAAGCACTTACTGTCGTTAAGAACGAGCCGCAAGCCTAG

mRNA sequence

ATGCTGGGGAGTAGCGTGGATTCTCTGGCAGATGGAGCAAAAGGACTTGTTAAGGGAGCTGTTGCACAACCACGGTTATTAGTTCCAGTCATATTGGTTATGGTATATAACCGTTGGAACGGTATTCTTGTCGAAGATTATGGAGTTATGCATTTACAGTTGATACCAATGCTAGTTGGATTCTTCACGTACAAGGTTGCTACTTTTGTTCAAGCTTTAGAGGAAGCACTTACTGTCGTTAAGAACGAGCCGCAAGCCTAG

Coding sequence (CDS)

ATGCTGGGGAGTAGCGTGGATTCTCTGGCAGATGGAGCAAAAGGACTTGTTAAGGGAGCTGTTGCACAACCACGGTTATTAGTTCCAGTCATATTGGTTATGGTATATAACCGTTGGAACGGTATTCTTGTCGAAGATTATGGAGTTATGCATTTACAGTTGATACCAATGCTAGTTGGATTCTTCACGTACAAGGTTGCTACTTTTGTTCAAGCTTTAGAGGAAGCACTTACTGTCGTTAAGAACGAGCCGCAAGCCTAG

Protein sequence

MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVGFFTYKVATFVQALEEALTVVKNEPQA

Homology

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: A0A0A0KC26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G242200 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-35
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+SVDSLADGAKGLVKGAVAQPRLLVPVILVM+YNRWNGILVEDYGV+ LQLIPMLVG
Sbjct: 254 MLGNSVDSLADGAKGLVKGAVAQPRLLVPVILVMIYNRWNGILVEDYGVVQLQLIPMLVG 313

Query: 61  FFTYKVATFVQALEEALTVVKNEPQA 87
           FFTYKVATFVQA+EEALTVVK EPQA
Sbjct: 314 FFTYKVATFVQAIEEALTVVK-EPQA 338

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: B9SRC2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613770 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.8e-32
Identity = 66/79 (83.54%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSS+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV DYG+MHL+LIPMLVG
Sbjct: 256 MLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVPDYGLMHLELIPMLVG 315

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATFVQA+EEA+TV
Sbjct: 316 FFTYKIATFVQAIEEAVTV 334

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: A0A067KJA2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09798 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-31
Identity = 65/79 (82.28%), Postives = 76/79 (96.20%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSSVDS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV+DYG MHL+LIPMLVG
Sbjct: 253 MLGSSVDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVQDYGFMHLELIPMLVG 312

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATF+QA+E+AL V
Sbjct: 313 FFTYKIATFIQAIEDALPV 331

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: A5AH71_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018738 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-31
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSSVDS+ADGAKGL+KGA+AQPRLLVPV LVM+YNRWN I+V ++G MHL+LIPMLVG
Sbjct: 252 MLGSSVDSMADGAKGLMKGAIAQPRLLVPVALVMIYNRWNEIVVPEFGFMHLELIPMLVG 311

Query: 61  FFTYKVATFVQALEEALTVVKNEPQ 86
           FFTYKVATFVQA+EEALT+V  + Q
Sbjct: 312 FFTYKVATFVQAIEEALTIVGKDTQ 336

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: E0CTR9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02170 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-31
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSSVDS+ADGAKGL+KGA+AQPRLLVPV LVM+YNRWN I+V ++G MHL+LIPMLVG
Sbjct: 252 MLGSSVDSMADGAKGLMKGAIAQPRLLVPVALVMIYNRWNEIVVPEFGFMHLELIPMLVG 311

Query: 61  FFTYKVATFVQALEEALTVVKNEPQ 86
           FFTYKVATFVQA+EEALT+V  + Q
Sbjct: 312 FFTYKVATFVQAIEEALTIVGKDTQ 336

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|659094770|ref|XP_008448233.1| (PREDICTED: uncharacterized protein LOC103490489 isoform X1 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+SVDSLADGAKGLVKGAVAQPRLLVPVILVM+YNRWNGILVEDYGVM LQLIPMLVG
Sbjct: 254 MLGNSVDSLADGAKGLVKGAVAQPRLLVPVILVMIYNRWNGILVEDYGVMQLQLIPMLVG 313

Query: 61  FFTYKVATFVQALEEALTVVKNEPQA 87
           FFTYKVATFVQA+EEALTVVKN+PQA
Sbjct: 314 FFTYKVATFVQAIEEALTVVKNKPQA 339

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|449465218|ref|XP_004150325.1| (PREDICTED: uncharacterized protein LOC101216352 isoform X1 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-35
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+SVDSLADGAKGLVKGAVAQPRLLVPVILVM+YNRWNGILVEDYGV+ LQLIPMLVG
Sbjct: 254 MLGNSVDSLADGAKGLVKGAVAQPRLLVPVILVMIYNRWNGILVEDYGVVQLQLIPMLVG 313

Query: 61  FFTYKVATFVQALEEALTVVKNEPQA 87
           FFTYKVATFVQA+EEALTVVK EPQA
Sbjct: 314 FFTYKVATFVQAIEEALTVVK-EPQA 338

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|223532043|gb|EEF33853.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 66/79 (83.54%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSS+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV DYG+MHL+LIPMLVG
Sbjct: 256 MLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVPDYGLMHLELIPMLVG 315

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATFVQA+EEA+TV
Sbjct: 316 FFTYKIATFVQAIEEAVTV 334

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|1000947817|ref|XP_015580443.1| (PREDICTED: uncharacterized protein LOC8258767 [Ricinus communis])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 66/79 (83.54%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSS+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV DYG+MHL+LIPMLVG
Sbjct: 256 MLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVPDYGLMHLELIPMLVG 315

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATFVQA+EEA+TV
Sbjct: 316 FFTYKIATFVQAIEEAVTV 334

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|720068203|ref|XP_010277031.1| (PREDICTED: uncharacterized protein LOC104611596 [Nelumbo nucifera])

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+S+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNG+LV +YG MHL LIPMLVG
Sbjct: 257 MLGNSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGLLVPEYGFMHLDLIPMLVG 316

Query: 61  FFTYKVATFVQALEEALTVVKNEPQ 86
           FFTYKVATF+QA+E+ALTVV+   Q
Sbjct: 317 FFTYKVATFIQAIEDALTVVEKSTQ 341

The following BLAST results are available for this feature:

BLAST of Cla013542 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC26_CUCSA	2.1e-35	93.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G242200 PE=4 SV=1	[more]
B9SRC2_RICCO	4.8e-32	83.54	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613770 PE=4 SV=1	[more]
A0A067KJA2_JATCU	1.8e-31	82.28	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09798 PE=4 SV=1	[more]
A5AH71_VITVI	9.0e-31	78.82	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018738 PE=4 SV=1	[more]
E0CTR9_VITVI	9.0e-31	78.82	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02170 PE=4 SV=...	[more]

BLAST of Cla013542 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094770\|ref\|XP_008448233.1\|	2.4e-37	94.19	PREDICTED: uncharacterized protein LOC103490489 isoform X1 [Cucumis melo]	[more]
gi\|449465218\|ref\|XP_004150325.1\|	3.0e-35	93.02	PREDICTED: uncharacterized protein LOC101216352 isoform X1 [Cucumis sativus]	[more]
gi\|223532043\|gb\|EEF33853.1\|	6.9e-32	83.54	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000947817\|ref\|XP_015580443.1\|	6.9e-32	83.54	PREDICTED: uncharacterized protein LOC8258767 [Ricinus communis]	[more]
gi\|720068203\|ref\|XP_010277031.1\|	2.0e-31	76.47	PREDICTED: uncharacterized protein LOC104611596 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033614	chloroplast proton-transporting ATP synthase complex assembly
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla013542	Cla013542	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla013542	Cla013542.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla013542.1.cds1	Cla013542.1.cds1	CDS
Cla013542.1.cds2	Cla013542.1.cds2	CDS
Cla013542.1.cds3	Cla013542.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34118	FAMILY NOT NAMED	coord: 1..86 score: 6.0
None	No IPR available	PANTHER	PTHR34118:SF3	ATP SYNTHASE PROTEIN I-RELATED PROTEIN	coord: 1..86 score: 6.0