Cla013542 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013542
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ATP synthase protein I (AHRD V1 **-- O82279_ARATH)
Location	Chr2 : 28199322 .. 28200426 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGGGAGTAGCGTGGATTCTCTGGCAGATGGAGCAAAAGGACTTGTTAAGTATGTATTACACAACTCTTTTTTTGTTACAGTTGAATGTTGATGATTTTCACTAAATCATTTTGTATTCTATTTCTTTCTCATAAGATTATGGTACAAGCCATGGTGAATTACTGTGATGTTCGTTCTGAAGTATATGGACTGTATGGTGCACCTTGGATTTTCTTTCATTTTTTATTAATAAAAGTTTGGTTTCTCATTTTCTTAAAAAGAAAACAGAAAAAAGAAAAGAAAAGACAAATATGTTGCATCCCCAAGCATCAAGATGTTTTAGGACAAATCTTTATAGATACTTCACAATTCATCTTGTTGATACAGGTGGTGATTTGAGAGTTTATTTCCATAACATGAAGTTTGATTCTATACATTCTATGTTGATAATTCTTTGTACCAGTATAACGGAATACTGATTTAATTTTTTCTTGAAGAACGAGACTGAACTTGTTGGATTTCATGTCATCTTAAAGAAATCATTGCAATTTCGTTGCAGGGGAGCTGTTGCACAACCACGGTTATTAGTTCCAGTCATATTGGTTATGGTATATAACCGTTGGAACGGGTAAGTATGCTCACTACCTTGTTAGTTTTGGCAATTTTCCCCTTCTATATGGCCACTATAAGCATTCACACCCATTACCAAAACATTCATTCTCTCTCTCTTGTCGTCTAGTATTATTTTTAAACTGAATTTTTTTCAAGGAAATGAAAACGTACATACGAAGAGATGTGAATCCTGTAGGTCCCCATTACTGATTGTGTACTTTTTTTTTTCTTTTTCTTTTTGAATAAAGCATGGTCTTACTCTTGATTGACACCACAGACTTTGAATTTAGAATGTGAAATCAACAAAACATTTTAGCAGGCACAGCTGGGGTTCTAATTACCCACATTTTCTTATCCTTTTTCTTTGTAGTATTCTTGTCGAAGATTATGGAGTTATGCATTTACAGTTGATACCAATGCTAGTTGGATTCTTCACGTACAAGGTTGCTACTTTTGTTCAAGCTTTAGAGGAAGCACTTACTGTCGTTAAGAACGAGCCGCAAGCCTAG

mRNA sequence

ATGCTGGGGAGTAGCGTGGATTCTCTGGCAGATGGAGCAAAAGGACTTGTTAAGGGAGCTGTTGCACAACCACGGTTATTAGTTCCAGTCATATTGGTTATGGTATATAACCGTTGGAACGGTATTCTTGTCGAAGATTATGGAGTTATGCATTTACAGTTGATACCAATGCTAGTTGGATTCTTCACGTACAAGGTTGCTACTTTTGTTCAAGCTTTAGAGGAAGCACTTACTGTCGTTAAGAACGAGCCGCAAGCCTAG

Coding sequence (CDS)

ATGCTGGGGAGTAGCGTGGATTCTCTGGCAGATGGAGCAAAAGGACTTGTTAAGGGAGCTGTTGCACAACCACGGTTATTAGTTCCAGTCATATTGGTTATGGTATATAACCGTTGGAACGGTATTCTTGTCGAAGATTATGGAGTTATGCATTTACAGTTGATACCAATGCTAGTTGGATTCTTCACGTACAAGGTTGCTACTTTTGTTCAAGCTTTAGAGGAAGCACTTACTGTCGTTAAGAACGAGCCGCAAGCCTAG

Protein sequence

MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVGFFTYKVATFVQALEEALTVVKNEPQA

Homology

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: A0A0A0KC26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G242200 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-35
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+SVDSLADGAKGLVKGAVAQPRLLVPVILVM+YNRWNGILVEDYGV+ LQLIPMLVG
Sbjct: 254 MLGNSVDSLADGAKGLVKGAVAQPRLLVPVILVMIYNRWNGILVEDYGVVQLQLIPMLVG 313

Query: 61  FFTYKVATFVQALEEALTVVKNEPQA 87
           FFTYKVATFVQA+EEALTVVK EPQA
Sbjct: 314 FFTYKVATFVQAIEEALTVVK-EPQA 338

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: B9SRC2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613770 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.8e-32
Identity = 66/79 (83.54%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSS+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV DYG+MHL+LIPMLVG
Sbjct: 256 MLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVPDYGLMHLELIPMLVG 315

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATFVQA+EEA+TV
Sbjct: 316 FFTYKIATFVQAIEEAVTV 334

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: A0A067KJA2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09798 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-31
Identity = 65/79 (82.28%), Postives = 76/79 (96.20%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSSVDS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV+DYG MHL+LIPMLVG
Sbjct: 253 MLGSSVDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVQDYGFMHLELIPMLVG 312

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATF+QA+E+AL V
Sbjct: 313 FFTYKIATFIQAIEDALPV 331

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: A5AH71_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018738 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-31
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSSVDS+ADGAKGL+KGA+AQPRLLVPV LVM+YNRWN I+V ++G MHL+LIPMLVG
Sbjct: 252 MLGSSVDSMADGAKGLMKGAIAQPRLLVPVALVMIYNRWNEIVVPEFGFMHLELIPMLVG 311

Query: 61  FFTYKVATFVQALEEALTVVKNEPQ 86
           FFTYKVATFVQA+EEALT+V  + Q
Sbjct: 312 FFTYKVATFVQAIEEALTIVGKDTQ 336

[Close]

BLAST of Cla013542 vs. TrEMBL
Match: E0CTR9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02170 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-31
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSSVDS+ADGAKGL+KGA+AQPRLLVPV LVM+YNRWN I+V ++G MHL+LIPMLVG
Sbjct: 252 MLGSSVDSMADGAKGLMKGAIAQPRLLVPVALVMIYNRWNEIVVPEFGFMHLELIPMLVG 311

Query: 61  FFTYKVATFVQALEEALTVVKNEPQ 86
           FFTYKVATFVQA+EEALT+V  + Q
Sbjct: 312 FFTYKVATFVQAIEEALTIVGKDTQ 336

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|659094770|ref|XP_008448233.1| (PREDICTED: uncharacterized protein LOC103490489 isoform X1 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+SVDSLADGAKGLVKGAVAQPRLLVPVILVM+YNRWNGILVEDYGVM LQLIPMLVG
Sbjct: 254 MLGNSVDSLADGAKGLVKGAVAQPRLLVPVILVMIYNRWNGILVEDYGVMQLQLIPMLVG 313

Query: 61  FFTYKVATFVQALEEALTVVKNEPQA 87
           FFTYKVATFVQA+EEALTVVKN+PQA
Sbjct: 314 FFTYKVATFVQAIEEALTVVKNKPQA 339

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|449465218|ref|XP_004150325.1| (PREDICTED: uncharacterized protein LOC101216352 isoform X1 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-35
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+SVDSLADGAKGLVKGAVAQPRLLVPVILVM+YNRWNGILVEDYGV+ LQLIPMLVG
Sbjct: 254 MLGNSVDSLADGAKGLVKGAVAQPRLLVPVILVMIYNRWNGILVEDYGVVQLQLIPMLVG 313

Query: 61  FFTYKVATFVQALEEALTVVKNEPQA 87
           FFTYKVATFVQA+EEALTVVK EPQA
Sbjct: 314 FFTYKVATFVQAIEEALTVVK-EPQA 338

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|223532043|gb|EEF33853.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 66/79 (83.54%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSS+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV DYG+MHL+LIPMLVG
Sbjct: 256 MLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVPDYGLMHLELIPMLVG 315

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATFVQA+EEA+TV
Sbjct: 316 FFTYKIATFVQAIEEAVTV 334

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|1000947817|ref|XP_015580443.1| (PREDICTED: uncharacterized protein LOC8258767 [Ricinus communis])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 66/79 (83.54%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLGSS+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNGILV DYG+MHL+LIPMLVG
Sbjct: 256 MLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGILVPDYGLMHLELIPMLVG 315

Query: 61  FFTYKVATFVQALEEALTV 80
           FFTYK+ATFVQA+EEA+TV
Sbjct: 316 FFTYKIATFVQAIEEAVTV 334

[Close]

BLAST of Cla013542 vs. NCBI nr
Match: gi|720068203|ref|XP_010277031.1| (PREDICTED: uncharacterized protein LOC104611596 [Nelumbo nucifera])

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MLGSSVDSLADGAKGLVKGAVAQPRLLVPVILVMVYNRWNGILVEDYGVMHLQLIPMLVG 60
           MLG+S+DS+ADGAKGL+KGA+ QPRLLVPV+LVM+YNRWNG+LV +YG MHL LIPMLVG
Sbjct: 257 MLGNSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNGLLVPEYGFMHLDLIPMLVG 316

Query: 61  FFTYKVATFVQALEEALTVVKNEPQ 86
           FFTYKVATF+QA+E+ALTVV+   Q
Sbjct: 317 FFTYKVATFIQAIEDALTVVEKSTQ 341

The following BLAST results are available for this feature:

BLAST of Cla013542 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC26_CUCSA	2.1e-35	93.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G242200 PE=4 SV=1	[more]
B9SRC2_RICCO	4.8e-32	83.54	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613770 PE=4 SV=1	[more]
A0A067KJA2_JATCU	1.8e-31	82.28	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09798 PE=4 SV=1	[more]
A5AH71_VITVI	9.0e-31	78.82	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018738 PE=4 SV=1	[more]
E0CTR9_VITVI	9.0e-31	78.82	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02170 PE=4 SV=...	[more]

BLAST of Cla013542 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094770\|ref\|XP_008448233.1\|	2.4e-37	94.19	PREDICTED: uncharacterized protein LOC103490489 isoform X1 [Cucumis melo]	[more]
gi\|449465218\|ref\|XP_004150325.1\|	3.0e-35	93.02	PREDICTED: uncharacterized protein LOC101216352 isoform X1 [Cucumis sativus]	[more]
gi\|223532043\|gb\|EEF33853.1\|	6.9e-32	83.54	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000947817\|ref\|XP_015580443.1\|	6.9e-32	83.54	PREDICTED: uncharacterized protein LOC8258767 [Ricinus communis]	[more]
gi\|720068203\|ref\|XP_010277031.1\|	2.0e-31	76.47	PREDICTED: uncharacterized protein LOC104611596 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033614	chloroplast proton-transporting ATP synthase complex assembly
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05400	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013542	Cla013542.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05400	WMU05400	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34118	FAMILY NOT NAMED	coord: 1..86 score: 6.0
None	No IPR available	PANTHER	PTHR34118:SF3	ATP SYNTHASE PROTEIN I-RELATED PROTEIN	coord: 1..86 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013542	Melon (DHL92) v3.5.1	mewmB114
Cla013542	Melon (DHL92) v3.5.1	mewmB248
Cla013542	Watermelon (Charleston Gray)	wcgwmB197
Cla013542	Watermelon (Charleston Gray)	wcgwmB388
Cla013542	Cucumber (Chinese Long) v2	cuwmB598
Cla013542	Cucurbita pepo (Zucchini)	cpewmB054
Cla013542	Cucurbita pepo (Zucchini)	cpewmB750
Cla013542	Cucurbita pepo (Zucchini)	cpewmB265
Cla013542	Cucurbita pepo (Zucchini)	cpewmB298
Cla013542	Cucurbita pepo (Zucchini)	cpewmB303
Cla013542	Cucurbita pepo (Zucchini)	cpewmB668
Cla013542	Cucurbita pepo (Zucchini)	cpewmB724
Cla013542	Bottle gourd (USVL1VR-Ls)	lsiwmB073
Cla013542	Bottle gourd (USVL1VR-Ls)	lsiwmB078
Cla013542	Cucumber (Gy14) v2	cgybwmB561
Cla013542	Melon (DHL92) v3.6.1	medwmB112
Cla013542	Melon (DHL92) v3.6.1	medwmB239
Cla013542	Silver-seed gourd	carwmB0030
Cla013542	Silver-seed gourd	carwmB0034
Cla013542	Silver-seed gourd	carwmB0412
Cla013542	Silver-seed gourd	carwmB0719
Cla013542	Cucumber (Chinese Long) v3	cucwmB627
Cla013542	Watermelon (97103) v2	wmwmbB316
Cla013542	Watermelon (97103) v2	wmwmbB347
Cla013542	Wax gourd	wgowmB277
Cla013542	Wax gourd	wgowmB390
Cla013542	Wax gourd	wgowmB396
Cla013542	Watermelon (97103) v1	wmwmB109
Cla013542	Cucurbita maxima (Rimu)	cmawmB125
Cla013542	Cucurbita maxima (Rimu)	cmawmB500
Cla013542	Cucurbita maxima (Rimu)	cmawmB524
Cla013542	Cucurbita maxima (Rimu)	cmawmB540
Cla013542	Cucurbita maxima (Rimu)	cmawmB588
Cla013542	Cucurbita maxima (Rimu)	cmawmB593
Cla013542	Cucurbita moschata (Rifu)	cmowmB112
Cla013542	Cucurbita moschata (Rifu)	cmowmB199
Cla013542	Cucurbita moschata (Rifu)	cmowmB493
Cla013542	Cucurbita moschata (Rifu)	cmowmB513
Cla013542	Cucurbita moschata (Rifu)	cmowmB530
Cla013542	Cucurbita moschata (Rifu)	cmowmB582
Cla013542	Cucurbita moschata (Rifu)	cmowmB586