Cla013222.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013222
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 13088079 .. 13088279 (-)
Sequence length	201

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTTAAGAAGAACAAGTCTAAATTAATAGCAGCTTTGGCACAAACAACATCTGAAGCTGACTTTCAGAGGATCATAGCCCTCGCGGCTTCAAATTCATCGTTGAGCGCATCTCCTCCTCCTTCAGTTGAAGATAACCCTAAAGAAGAACTAGATTATGATCTCAACGATCCATACCTCAACTCACAACCTATGTGA

mRNA sequence

ATGGACCTTAAGAAGAACAAGTCTAAATTAATAGCAGCTTTGGCACAAACAACATCTGAAGCTGACTTTCAGAGGATCATAGCCCTCGCGGCTTCAAATTCATCGTTGAGCGCATCTCCTCCTCCTTCAGTTGAAGATAACCCTAAAGAAGAACTAGATTATGATCTCAACGATCCATACCTCAACTCACAACCTATGTGA

Coding sequence (CDS)

ATGGACCTTAAGAAGAACAAGTCTAAATTAATAGCAGCTTTGGCACAAACAACATCTGAAGCTGACTTTCAGAGGATCATAGCCCTCGCGGCTTCAAATTCATCGTTGAGCGCATCTCCTCCTCCTTCAGTTGAAGATAACCCTAAAGAAGAACTAGATTATGATCTCAACGATCCATACCTCAACTCACAACCTATGTGA

Protein sequence

MDLKKNKSKLIAALAQTTSEADFQRIIALAASNSSLSASPPPSVEDNPKEELDYDLNDPYLNSQPM

Homology

[Close]

BLAST of Cla013222 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 14  LAQTTSEADFQRIIALAASNSSLSASPPPSV-EDNPKEELDYDLNDPYLNSQPM 67
           LAQ T++ADFQR+++ A + SS S SP  S+ ED  + + +YDLNDP+L+SQPM
Sbjct: 142 LAQATTDADFQRLLSTAVNASSSSKSPSSSIQEDEEQVDPEYDLNDPFLDSQPM 195

The following BLAST results are available for this feature:

BLAST of Cla013222 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098578\|ref\|XP_008450208.1\|	2.9e-06	53.70	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla013222	Cla013222	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla013222	Cla013222.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla013222.1.cds1	Cla013222.1.cds1	CDS