Cla013222 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013222
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 13088079 .. 13088279 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTTAAGAAGAACAAGTCTAAATTAATAGCAGCTTTGGCACAAACAACATCTGAAGCTGACTTTCAGAGGATCATAGCCCTCGCGGCTTCAAATTCATCGTTGAGCGCATCTCCTCCTCCTTCAGTTGAAGATAACCCTAAAGAAGAACTAGATTATGATCTCAACGATCCATACCTCAACTCACAACCTATGTGA

mRNA sequence

ATGGACCTTAAGAAGAACAAGTCTAAATTAATAGCAGCTTTGGCACAAACAACATCTGAAGCTGACTTTCAGAGGATCATAGCCCTCGCGGCTTCAAATTCATCGTTGAGCGCATCTCCTCCTCCTTCAGTTGAAGATAACCCTAAAGAAGAACTAGATTATGATCTCAACGATCCATACCTCAACTCACAACCTATGTGA

Coding sequence (CDS)

ATGGACCTTAAGAAGAACAAGTCTAAATTAATAGCAGCTTTGGCACAAACAACATCTGAAGCTGACTTTCAGAGGATCATAGCCCTCGCGGCTTCAAATTCATCGTTGAGCGCATCTCCTCCTCCTTCAGTTGAAGATAACCCTAAAGAAGAACTAGATTATGATCTCAACGATCCATACCTCAACTCACAACCTATGTGA

Protein sequence

MDLKKNKSKLIAALAQTTSEADFQRIIALAASNSSLSASPPPSVEDNPKEELDYDLNDPYLNSQPM

Homology

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BLAST of Cla013222 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 14  LAQTTSEADFQRIIALAASNSSLSASPPPSV-EDNPKEELDYDLNDPYLNSQPM 67
           LAQ T++ADFQR+++ A + SS S SP  S+ ED  + + +YDLNDP+L+SQPM
Sbjct: 142 LAQATTDADFQRLLSTAVNASSSSKSPSSSIQEDEEQVDPEYDLNDPFLDSQPM 195

The following BLAST results are available for this feature:

BLAST of Cla013222 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098578\|ref\|XP_008450208.1\|	2.9e-06	53.70	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013222	Cla013222.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013222	Silver-seed gourd	carwmB0476
Cla013222	Silver-seed gourd	carwmB0760
Cla013222	Cucumber (Chinese Long) v3	cucwmB245
Cla013222	Cucumber (Chinese Long) v3	cucwmB254
Cla013222	Watermelon (97103) v2	wmwmbB206
Cla013222	Wax gourd	wgowmB215
Cla013222	Cucurbita maxima (Rimu)	cmawmB243
Cla013222	Cucurbita maxima (Rimu)	cmawmB434
Cla013222	Cucurbita moschata (Rifu)	cmowmB232
Cla013222	Cucurbita moschata (Rifu)	cmowmB427
Cla013222	Melon (DHL92) v3.5.1	mewmB461
Cla013222	Melon (DHL92) v3.5.1	mewmB474
Cla013222	Watermelon (Charleston Gray)	wcgwmB286
Cla013222	Cucumber (Chinese Long) v2	cuwmB239
Cla013222	Cucumber (Chinese Long) v2	cuwmB245
Cla013222	Cucurbita pepo (Zucchini)	cpewmB568
Cla013222	Cucurbita pepo (Zucchini)	cpewmB614
Cla013222	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013222	Cucumber (Gy14) v2	cgybwmB223
Cla013222	Cucumber (Gy14) v2	cgybwmB232
Cla013222	Melon (DHL92) v3.6.1	medwmB448
Cla013222	Melon (DHL92) v3.6.1	medwmB462