Cla012094.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012094
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	chaperonin (AHRD V1 ***- O24186_ORYSA); contains Interpro domain(s) IPR001476 Chaperonin Cpn10
Location	Chr4 : 16518801 .. 16520223 (+)
Sequence length	321

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCGTTTGGTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTGCCTCCTGCCAAAACCAATTCCGGCATTCTGCTTCCTGAGAAGTCCAGTAAGGTGAATCTTCCTTTCCTCTCTCCCCCATTTCGATTCCCAAAATGTTAATTCGGTTGTTTGTGTATGGGAATTCGTGGGAGAATCGGCTTTCTCTTGCAATTTGCTTTTGTTTTCGTTGTTTCTTTACCGAGATTCTGGAAATTTGCGGCACTTAATTCTCTCGGACGTCTAGAGTCATTTTCGTTGATGGGTATTCTTATGGAGTCATTTCCGTTTATGGGGGTTTTTTTTTTTCCCTCTTTAGCCTTTTCTTATTTAATAGTTATTTGGTTTATGGTTTGTTGTGAAGTCGGCTTCTAGTTGGGTCTGTGAGCTCATTTAGTGGTTATTTAATTAATTTCAATATTAGCCTATTCAAAGAAGACTTGTAATATAAGTTGAAAGTGTGAATGTTTTCATTTCCTCCTGATTTCAATGTTAGTGACTGAACGATTTATAACAAAATCTTTTTTCAAAGAGTGCGTTGTTAAATAATTCAAGACCGAATGCTTAACATAGATGTGGATGTAGCTGCTGAACTGTGTGAGTGGGATTGACCATGCAATTTTTTTTTTTTTCATTTTCAGCAGAAATCTAAGTTAGTTTAGAAGTATTTTTCGTGGATGAGCTTTGAATAGCTTTGATTTAGAGTACTTCCTTCCATCAGGATTTTTTAGATTCAGAATGATATGACTGTTTTGTTCATGATAAGTTTAAAGAGTCCATGGATTCTGGCTTGTGTTTTATTTAATCTTAACTCTCTGCATTTGAAGGACTAAATTTGCAATACCTTTCGTCCCAAACTAGTATGTCAGATTCTTATGACTTTCTCATGTTTTTCTTTGGGGTTGGATTTTAAAGATCTTTTGTAATTATTCAATAGGTTAGGTTCTGTAATGGAGAATTGGATCTTTTTTCTCTAGTTGGGCTCCCTTTTGTGGTCTTGATTTTTTTTCTTTTTTCTTTTTTATTATTATTTTTTTTTGTATTATTGTATTCTTTCATTTCTTTTCTCAATGAAAATTGTTATAAAAAAAAGTTGTTGTGACGTTCGGCTTTGTTACACAAAATTTATGGATCGTTTATCGAGTGCCTCTTCCACTGACTTTTGTTTCTCATGTAGCTTAACTCTGGAAAAGTTATCTCTGTTGGTCCTGGGGCTCGTGATAGAGAGGGAAAGATTATTCCTGTCACTGTAAAAGAAGGTGACACCGTCCTCCTACCAGAATATGGAGGCACTGAAGTCAAGCTTGGAGAAAAACAGTATGTATACTTGTTCTCTTACTTTTGTTATTTATTTAAGTTTTGGTCTGTTATTTGCTCAAGAATTTGGTTTTAA

mRNA sequence

ATGGCGAAGCGTTTGGTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTGCCTCCTGCCAAAACCAATTCCGGCATTCTGCTTCCTGAGAAGTCCAGTAAGCTTAACTCTGGAAAAGTTATCTCTGTTGGTCCTGGGGCTCGTGATAGAGAGGGAAAGATTATTCCTGTCACTGTAAAAGAAGGTGACACCGTCCTCCTACCAGAATATGGAGGCACTGAAGTCAAGCTTGGAGAAAAACAGTATGTATACTTGTTCTCTTACTTTTGTTATTTATTTAAGTTTTGGTCTGTTATTTGCTCAAGAATTTGGTTTTAA

Coding sequence (CDS)

ATGGCGAAGCGTTTGGTTCCATTGCTGAATCGCGTTCTGATCGAGAAGATCGTGCCTCCTGCCAAAACCAATTCCGGCATTCTGCTTCCTGAGAAGTCCAGTAAGCTTAACTCTGGAAAAGTTATCTCTGTTGGTCCTGGGGCTCGTGATAGAGAGGGAAAGATTATTCCTGTCACTGTAAAAGAAGGTGACACCGTCCTCCTACCAGAATATGGAGGCACTGAAGTCAAGCTTGGAGAAAAACAGTATGTATACTTGTTCTCTTACTTTTGTTATTTATTTAAGTTTTGGTCTGTTATTTGCTCAAGAATTTGGTTTTAA

Protein sequence

MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTVKEGDTVLLPEYGGTEVKLGEKQYVYLFSYFCYLFKFWSVICSRIWF

Homology

[Close]

BLAST of Cla012094 vs. Swiss-Prot
Match: CH10_ARATH (10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-32
Identity = 62/83 (74.70%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          M KRL+P  NR+L+++++ PAKT SGILLPEKSSKLNSGKVI+VGPG+RD++GK+IPV+V
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEGDTVLLPEYGGT+VKLGE +Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEY 83

[Close]

BLAST of Cla012094 vs. Swiss-Prot
Match: CH10_BRANA (10 kDa chaperonin OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-31
Identity = 62/83 (74.70%), Postives = 76/83 (91.57%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          M KRL+P  NR+L++ ++ PAKT SGILLPEK+SKLNSGKVI+VGPG+RD++GK+IPV+V
Sbjct: 1  MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEGDTVLLPEYGGT+VKLGEK+Y
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEY 83

[Close]

BLAST of Cla012094 vs. Swiss-Prot
Match: CH10_SCHPO (10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hsp10 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-18
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 2  AKRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTV 61
          AK +VPLL+R+L+++I    KT SGI LPEKS  KL+ G+VISVG G  ++EGK+   +V
Sbjct: 8  AKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSV 67

Query: 62 KEGDTVLLPEYGGTEVKLGEKQY 84
            GD VLLP YGG+ +K+GE++Y
Sbjct: 68 AVGDRVLLPAYGGSNIKVGEEEY 90

[Close]

BLAST of Cla012094 vs. Swiss-Prot
Match: CH10_YEAST (10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSP10 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 2  AKRLVPLLNRVLIEKIVPPAKTNSGILLPEKS-SKLNSGKVISVGPGARDREGKIIPVTV 61
          AK +VPL++RVL+++I   AKT SG+ LPEK+  KLN  +V++VGPG  D  G  +   V
Sbjct: 8  AKSIVPLMDRVLVQRIKAQAKTASGLYLPEKNVEKLNQAEVVAVGPGFTDANGNKVVPQV 67

Query: 62 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          K GD VL+P++GG+ +KLG    V LF
Sbjct: 68 KVGDQVLIPQFGGSTIKLGNDDEVILF 94

[Close]

BLAST of Cla012094 vs. Swiss-Prot
Match: CH10_ORYLA (10 kDa heat shock protein, mitochondrial OS=Oryzias latipes GN=hspe1 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-15
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 3  KRLVPLLNRVLIEKIVPPAKTNSGILLPEKSS-KLNSGKVISVGPGARDREGKIIPVTVK 62
          ++ +PL +RVL+E+++    T  GI+LPEKS  K+    V++VGPG+ +++G++ P++VK
Sbjct: 4  RKFLPLFDRVLVERLMAETVTKGGIMLPEKSQGKVLQATVVAVGPGSMNQKGEVQPMSVK 63

Query: 63 EGDTVLLPEYGGTEVKLGEKQYVYLF 88
           G+ VLLP+YGGT+V L +K Y +LF
Sbjct: 64 VGEKVLLPQYGGTKVVLEDKDY-FLF 88

[Close]

BLAST of Cla012094 vs. TrEMBL
Match: A0A0A0KYT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-34
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKS+KLNSGKVI+VGPGARDREGKIIP++V
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGD VLLPEYGG EVKLGEKQ+ YLF
Sbjct: 61 KEGDMVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of Cla012094 vs. TrEMBL
Match: M0TSH4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 69/83 (83.13%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PL NRVL+EKIVPP+KT++GILLPEK++KLNSGKV++VGPGARDR+GK+IPV+V
Sbjct: 1  MAKRLIPLFNRVLVEKIVPPSKTSAGILLPEKTTKLNSGKVVAVGPGARDRDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEGDTVLLPEYGGTEVKLGEK+Y
Sbjct: 61 KEGDTVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of Cla012094 vs. TrEMBL
Match: A0A059D9Z0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03754 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-33
Identity = 70/83 (84.34%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+P LNRVLIEKIVPP+KTN+GILLPEK++KLNSGKV++VGPGARD++GKIIPV+V
Sbjct: 1  MAKRLIPTLNRVLIEKIVPPSKTNTGILLPEKTTKLNSGKVMAVGPGARDKDGKIIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEG+TVLLPEYGGTEVKLGEK+Y
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of Cla012094 vs. TrEMBL
Match: B9GG69_POPTR (10 kDa chaperonin family protein OS=Populus trichocarpa GN=POPTR_0001s28090g PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-33
Identity = 67/83 (80.72%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+P  NR+L+EKI+PP+KTNSGILLPEK+SKLNSGKV++VGPGARD++GK+IPVT+
Sbjct: 1  MAKRLIPTFNRILVEKIIPPSKTNSGILLPEKTSKLNSGKVVAVGPGARDKDGKLIPVTL 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEG+TVLLPEYGGTEVKLGEK+Y
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of Cla012094 vs. TrEMBL
Match: A0A103XSU5_CYNCS (Chaperonin Cpn10 OS=Cynara cardunculus var. scolymus GN=Ccrd_001673 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+P LNRVL+EKIVPP+KT +GILLPEKSSKLNSGKV++VGPG RD  G  IPV V
Sbjct: 1  MAKRLIPCLNRVLVEKIVPPSKTTAGILLPEKSSKLNSGKVVAVGPGTRDNSGNTIPVAV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVY-LFSY 90
          KEGDTVLLPEYGG EVKLGEK+YV+ LFSY
Sbjct: 61 KEGDTVLLPEYGGMEVKLGEKEYVFPLFSY 90

[Close]

BLAST of Cla012094 vs. NCBI nr
Match: gi|659111415|ref|XP_008455733.1| (PREDICTED: 10 kDa chaperonin-like [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKSSKLNSGKVI+VGPGARDREGKIIP++V
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSSKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGD VLLPEYGG EVKLGEKQ+ YLF
Sbjct: 61 KEGDIVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of Cla012094 vs. NCBI nr
Match: gi|449453157|ref|XP_004144325.1| (PREDICTED: 10 kDa chaperonin-like [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PLLNRVLIEKIVPP KTNSGILLPEKS+KLNSGKVI+VGPGARDREGKIIP++V
Sbjct: 1  MAKRLLPLLNRVLIEKIVPPTKTNSGILLPEKSTKLNSGKVIAVGPGARDREGKIIPISV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQYVYLF 88
          KEGD VLLPEYGG EVKLGEKQ+ YLF
Sbjct: 61 KEGDMVLLPEYGGNEVKLGEKQF-YLF 86

[Close]

BLAST of Cla012094 vs. NCBI nr
Match: gi|695052315|ref|XP_009414211.1| (PREDICTED: 10 kDa chaperonin-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 149.1 bits (375), Expect = 4.5e-33
Identity = 69/83 (83.13%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+PL NRVL+EKIVPP+KT++GILLPEK++KLNSGKV++VGPGARDR+GK+IPV+V
Sbjct: 1  MAKRLIPLFNRVLVEKIVPPSKTSAGILLPEKTTKLNSGKVVAVGPGARDRDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEGDTVLLPEYGGTEVKLGEK+Y
Sbjct: 61 KEGDTVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of Cla012094 vs. NCBI nr
Match: gi|702279462|ref|XP_010045089.1| (PREDICTED: 10 kDa chaperonin-like [Eucalyptus grandis])

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-33
Identity = 70/83 (84.34%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+P LNRVLIEKIVPP+KTN+GILLPEK++KLNSGKV++VGPGARD++GKIIPV+V
Sbjct: 1  MAKRLIPTLNRVLIEKIVPPSKTNTGILLPEKTTKLNSGKVMAVGPGARDKDGKIIPVSV 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEG+TVLLPEYGGTEVKLGEK+Y
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKEY 83

[Close]

BLAST of Cla012094 vs. NCBI nr
Match: gi|224059690|ref|XP_002299972.1| (10 kDa chaperonin family protein [Populus trichocarpa])

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-33
Identity = 67/83 (80.72%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MAKRLVPLLNRVLIEKIVPPAKTNSGILLPEKSSKLNSGKVISVGPGARDREGKIIPVTV 60
          MAKRL+P  NR+L+EKI+PP+KTNSGILLPEK+SKLNSGKV++VGPGARD++GK+IPVT+
Sbjct: 1  MAKRLIPTFNRILVEKIIPPSKTNSGILLPEKTSKLNSGKVVAVGPGARDKDGKLIPVTL 60

Query: 61 KEGDTVLLPEYGGTEVKLGEKQY 84
          KEG+TVLLPEYGGTEVKLGEK+Y
Sbjct: 61 KEGETVLLPEYGGTEVKLGEKEY 83

The following BLAST results are available for this feature:

BLAST of Cla012094 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CH10_ARATH	6.5e-32	74.70	10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1	[more]
CH10_BRANA	1.1e-31	74.70	10 kDa chaperonin OS=Brassica napus PE=3 SV=1	[more]
CH10_SCHPO	7.0e-18	54.22	10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
CH10_YEAST	2.9e-16	49.43	10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
CH10_ORYLA	5.5e-15	45.35	10 kDa heat shock protein, mitochondrial OS=Oryzias latipes GN=hspe1 PE=3 SV=1	[more]

BLAST of Cla012094 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYT6_CUCSA	1.7e-34	88.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G426760 PE=3 SV=1	[more]
M0TSH4_MUSAM	3.1e-33	83.13	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
A0A059D9Z0_EUCGR	5.3e-33	84.34	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03754 PE=3 SV=1	[more]
B9GG69_POPTR	5.3e-33	80.72	10 kDa chaperonin family protein OS=Populus trichocarpa GN=POPTR_0001s28090g PE=...	[more]
A0A103XSU5_CYNCS	1.6e-32	80.00	Chaperonin Cpn10 OS=Cynara cardunculus var. scolymus GN=Ccrd_001673 PE=3 SV=1	[more]

BLAST of Cla012094 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111415\|ref\|XP_008455733.1\|	1.1e-34	89.66	PREDICTED: 10 kDa chaperonin-like [Cucumis melo]	[more]
gi\|449453157\|ref\|XP_004144325.1\|	2.4e-34	88.51	PREDICTED: 10 kDa chaperonin-like [Cucumis sativus]	[more]
gi\|695052315\|ref\|XP_009414211.1\|	4.5e-33	83.13	PREDICTED: 10 kDa chaperonin-like [Musa acuminata subsp. malaccensis]	[more]
gi\|702279462\|ref\|XP_010045089.1\|	7.7e-33	84.34	PREDICTED: 10 kDa chaperonin-like [Eucalyptus grandis]	[more]
gi\|224059690\|ref\|XP_002299972.1\|	7.7e-33	80.72	10 kDa chaperonin family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011032	GroES-like_sf
IPR018369	Chaprnonin_Cpn10_CS
IPR020818	Chaperonin_GroES

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla012094	Cla012094	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla012094	Cla012094.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla012094.1.cds1	Cla012094.1.cds1	CDS
Cla012094.1.cds2	Cla012094.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011032	GroES-like	unknown	SSF50129	GroES-like	coord: 4..85 score: 4.24
IPR018369	Chaperonin GroES, conserved site	PROSITE	PS00681	CHAPERONINS_CPN10	coord: 5..29 scor
IPR020818	GroES chaperonin family	PRINTS	PR00297	CHAPERONIN10	coord: 26..47 score: 9.8E-11coord: 61..73 score: 9.8E-11coord: 5..20 score: 9.8
IPR020818	GroES chaperonin family	GENE3D	G3DSA:2.30.33.40		coord: 3..85 score: 4.5
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 1..83 score: 1.3
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 5..86 score: 3.5
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 4..85 score: 1.6
None	No IPR available	PANTHER	PTHR10772:SF8	10 KDA CHAPERONIN	coord: 1..83 score: 1.3