Cla011049.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATCTCGATCATGGTCTTTGTTTGGTGTACGTAACATTTGACCCATAGCCTATGGCTGATATGCACTGATTGGGAATAATACCACACTTGCATTGCATCCCGGCTGTGCATATCCTTGTCACTCAACCATGTTTTTTCTTGTACGCCTAAGTAAGCACAATCCAACTGGTTGTTTTGGACTTCTTTCTTCCTCAATAAGAACGTAAAACCTGGTTATATTTTTGCAACCATGCTAAACATGTTGATAAAAATTATTTTATTGCAAGTTTGTCTAGAAGCTAGTAGTATACCTGAGATTTTCTTTAAGGGTCCAACCACGTTTTATAAGAAATGAGGATTGGGTCAAACGAGAGGTGCATTCAGAAGTGGCTTTGGGTCCAAGGTCAAAACAAGCGTTGATTTCTAGGAGTTGGGATTTTTGACCCATGACACTCGCTACCCGCCTCTATATGTTGAATTCGGATATCCCAGTACCCATTTTTAGTCTCTTTTTAACCAAAGGAATTATAAAAATTGAAGGACGTTTGTGAAGAATAGATGAATTGACTAAATTCTAATAGAATACGAAGTCGTGGACCAGGAAAGGAGGTAAAAAGGGGCCTATAAACGATGTTGACTGGCATTTTCTAGGGGCTTTCTGCCTCTAAACAAAGCCTTTGGTAGAGACATTTTTACAAAATTAACCTTTTTTATTTTATTTATTATTATCGTTTACAGTTTCTCATAAAATATTGCTGTTACATTTTGTGGAGGATGGGGTCAGATTGAACTCTCTTACACATTGTGTATTTTAACCATGCTGCACGCCCCATATCTTCATTTTTTATTATCTTTAGATAGATTTATGCTTTCCTTAATGTGTGTTTTTCATTGACAGCCAGTTAGCTGATTGTTTTTTTTTTTTTCCTTTTTTTTGTACTCATTTGCAGGTTACTAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCAGAAACGCAATTGAGCCAAGGGAACCTCCAAAGAAGCTTCAATCAGAGAAGCAACAGAAGCAGACTGAAGTTCATATATTGGAGAAGCATGAAGAGAGTGCTAATGCGAATACCTTTGATGACCATCAGTTGTTGAAATACTCCAACTTACCTTCCCAGTCAGCGAGGACAATAGAAGAGAATCCTCATCTTGAACACGAGCACCTTTCGGTTTCAAACAAAACAACACCATCTGATATACAAGTTACTAGCCCCGCTATGCTACGTGATAAAACACGAGTTGAGGAACAGCCCAAGCATGAGCAAGGTGAACAACAACCAAAGCGCGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCAAAGGAGGTGTGA ATGTCATCTCGATCATGGTCTTTGTTTGGTGTTACTAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCAGAAACGCAATTGAGCCAAGGGAACCTCCAAAGAAGCTTCAATCAGAGAAGCAACAGAAGCAGACTGAAGTTCATATATTGGAGAAGCATGAAGAGAGTGCTAATGCGAATACCTTTGATGACCATCAGTTGTTGAAATACTCCAACTTACCTTCCCAGTCAGCGAGGACAATAGAAGAGAATCCTCATCTTGAACACGAGCACCTTTCGGTTTCAAACAAAACAACACCATCTGATATACAAGTTACTAGCCCCGCTATGCTACGTGATAAAACACGAGTTGAGGAACAGCCCAAGCATGAGCAAGGTGAACAACAACCAAAGCGCGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCAAAGGAGGTGTGA ATGTCATCTCGATCATGGTCTTTGTTTGGTGTTACTAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCAGAAACGCAATTGAGCCAAGGGAACCTCCAAAGAAGCTTCAATCAGAGAAGCAACAGAAGCAGACTGAAGTTCATATATTGGAGAAGCATGAAGAGAGTGCTAATGCGAATACCTTTGATGACCATCAGTTGTTGAAATACTCCAACTTACCTTCCCAGTCAGCGAGGACAATAGAAGAGAATCCTCATCTTGAACACGAGCACCTTTCGGTTTCAAACAAAACAACACCATCTGATATACAAGTTACTAGCCCCGCTATGCTACGTGATAAAACACGAGTTGAGGAACAGCCCAAGCATGAGCAAGGTGAACAACAACCAAAGCGCGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCAAAGGAGGTGTGA MSSRSWSLFGVTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANTFDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQPKHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKEV
BLAST of Cla011049 vs. TrEMBL
Match: A0A0A0LJE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60 Identity = 123/157 (78.34%), Postives = 136/157 (86.62%), Query Frame = 1
BLAST of Cla011049 vs. TrEMBL
Match: A0A061GV10_THECC (Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao GN=TCM_041289 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1
BLAST of Cla011049 vs. TrEMBL
Match: B9SCZ9_RICCO (Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_1282630 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.8e-20 Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 1
BLAST of Cla011049 vs. TrEMBL
Match: W9S8T2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006586 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 6.3e-20 Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 1
BLAST of Cla011049 vs. TrEMBL
Match: A0A067KH73_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10865 PE=4 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19 Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 1
BLAST of Cla011049 vs. NCBI nr
Match: gi|449470301|ref|XP_004152856.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus]) HSP 1 Score: 240.4 bits (612), Expect = 2.3e-60 Identity = 123/157 (78.34%), Postives = 136/157 (86.62%), Query Frame = 1
BLAST of Cla011049 vs. NCBI nr
Match: gi|659069555|ref|XP_008450616.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo]) HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56 Identity = 117/157 (74.52%), Postives = 131/157 (83.44%), Query Frame = 1
BLAST of Cla011049 vs. NCBI nr
Match: gi|1009171164|ref|XP_015866594.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Ziziphus jujuba]) HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22 Identity = 69/165 (41.82%), Postives = 94/165 (56.97%), Query Frame = 1
BLAST of Cla011049 vs. NCBI nr
Match: gi|590586457|ref|XP_007015711.1| (Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1
BLAST of Cla011049 vs. NCBI nr
Match: gi|255565757|ref|XP_002523868.1| (PREDICTED: nuclear speckle splicing regulatory protein 1 isoform X1 [Ricinus communis]) HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20 Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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