Cla011049 (gene) Watermelon (97103) v1

NameCla011049
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCoiled-coil domain-containing protein 55 (DUF2040) (AHRD V1 ***- Q8S8I5_ARATH)
LocationChr1 : 16357742 .. 16359148 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTCGATCATGGTCTTTGTTTGGTGTACGTAACATTTGACCCATAGCCTATGGCTGATATGCACTGATTGGGAATAATACCACACTTGCATTGCATCCCGGCTGTGCATATCCTTGTCACTCAACCATGTTTTTTCTTGTACGCCTAAGTAAGCACAATCCAACTGGTTGTTTTGGACTTCTTTCTTCCTCAATAAGAACGTAAAACCTGGTTATATTTTTGCAACCATGCTAAACATGTTGATAAAAATTATTTTATTGCAAGTTTGTCTAGAAGCTAGTAGTATACCTGAGATTTTCTTTAAGGGTCCAACCACGTTTTATAAGAAATGAGGATTGGGTCAAACGAGAGGTGCATTCAGAAGTGGCTTTGGGTCCAAGGTCAAAACAAGCGTTGATTTCTAGGAGTTGGGATTTTTGACCCATGACACTCGCTACCCGCCTCTATATGTTGAATTCGGATATCCCAGTACCCATTTTTAGTCTCTTTTTAACCAAAGGAATTATAAAAATTGAAGGACGTTTGTGAAGAATAGATGAATTGACTAAATTCTAATAGAATACGAAGTCGTGGACCAGGAAAGGAGGTAAAAAGGGGCCTATAAACGATGTTGACTGGCATTTTCTAGGGGCTTTCTGCCTCTAAACAAAGCCTTTGGTAGAGACATTTTTACAAAATTAACCTTTTTTATTTTATTTATTATTATCGTTTACAGTTTCTCATAAAATATTGCTGTTACATTTTGTGGAGGATGGGGTCAGATTGAACTCTCTTACACATTGTGTATTTTAACCATGCTGCACGCCCCATATCTTCATTTTTTATTATCTTTAGATAGATTTATGCTTTCCTTAATGTGTGTTTTTCATTGACAGCCAGTTAGCTGATTGTTTTTTTTTTTTTCCTTTTTTTTGTACTCATTTGCAGGTTACTAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCAGAAACGCAATTGAGCCAAGGGAACCTCCAAAGAAGCTTCAATCAGAGAAGCAACAGAAGCAGACTGAAGTTCATATATTGGAGAAGCATGAAGAGAGTGCTAATGCGAATACCTTTGATGACCATCAGTTGTTGAAATACTCCAACTTACCTTCCCAGTCAGCGAGGACAATAGAAGAGAATCCTCATCTTGAACACGAGCACCTTTCGGTTTCAAACAAAACAACACCATCTGATATACAAGTTACTAGCCCCGCTATGCTACGTGATAAAACACGAGTTGAGGAACAGCCCAAGCATGAGCAAGGTGAACAACAACCAAAGCGCGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCAAAGGAGGTGTGA

mRNA sequence

ATGTCATCTCGATCATGGTCTTTGTTTGGTGTTACTAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCAGAAACGCAATTGAGCCAAGGGAACCTCCAAAGAAGCTTCAATCAGAGAAGCAACAGAAGCAGACTGAAGTTCATATATTGGAGAAGCATGAAGAGAGTGCTAATGCGAATACCTTTGATGACCATCAGTTGTTGAAATACTCCAACTTACCTTCCCAGTCAGCGAGGACAATAGAAGAGAATCCTCATCTTGAACACGAGCACCTTTCGGTTTCAAACAAAACAACACCATCTGATATACAAGTTACTAGCCCCGCTATGCTACGTGATAAAACACGAGTTGAGGAACAGCCCAAGCATGAGCAAGGTGAACAACAACCAAAGCGCGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCAAAGGAGGTGTGA

Coding sequence (CDS)

ATGTCATCTCGATCATGGTCTTTGTTTGGTGTTACTAAGAAGAGCGACATTAGCGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCCAGAAACGCAATTGAGCCAAGGGAACCTCCAAAGAAGCTTCAATCAGAGAAGCAACAGAAGCAGACTGAAGTTCATATATTGGAGAAGCATGAAGAGAGTGCTAATGCGAATACCTTTGATGACCATCAGTTGTTGAAATACTCCAACTTACCTTCCCAGTCAGCGAGGACAATAGAAGAGAATCCTCATCTTGAACACGAGCACCTTTCGGTTTCAAACAAAACAACACCATCTGATATACAAGTTACTAGCCCCGCTATGCTACGTGATAAAACACGAGTTGAGGAACAGCCCAAGCATGAGCAAGGTGAACAACAACCAAAGCGCGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCAAAGGAGGTGTGA

Protein sequence

MSSRSWSLFGVTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANTFDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQPKHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKEV
BLAST of Cla011049 vs. TrEMBL
Match: A0A0A0LJE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60
Identity = 123/157 (78.34%), Postives = 136/157 (86.62%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYF+LQKN+AYGARNAIEP  PPKKLQ EK++KQTEVHILEKHEES N +T
Sbjct: 168 VTKKSDMSDFYFSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDT 227

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
           F+DH LL+ SNLPS S +TIEE+PHLE E L  SNKTTPS+I+ TSP  L DKT V+EQP
Sbjct: 228 FNDH-LLQNSNLPSCSEKTIEEHPHLE-ERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQP 287

Query: 131 KHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKEV 168
           KHEQ EQ PK DHHKRNEDAVAAAKERFLARKRAKEV
Sbjct: 288 KHEQSEQPPKSDHHKRNEDAVAAAKERFLARKRAKEV 322

BLAST of Cla011049 vs. TrEMBL
Match: A0A061GV10_THECC (Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao GN=TCM_041289 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYFNL KN+A+GA N + PR P K  +S K +K+ E  I          + 
Sbjct: 169 VTKKSDLSDFYFNLGKNVAFGA-NEVGPRMPEKHTESRKPEKKDEKEI----------DV 228

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
               Q L  SN P  S  T              S  + P  + V     L++ + V+ QP
Sbjct: 229 IKRVQPLPNSNAPESSGVTDRTQDETSSRENFESQDSRPITVDVLPETALQETSSVK-QP 288

Query: 131 KHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKE 167
             +Q    PKRDHHKR EDAVAAA+ERFLARKRAKE
Sbjct: 289 SVDQ----PKRDHHKRGEDAVAAARERFLARKRAKE 308

BLAST of Cla011049 vs. TrEMBL
Match: B9SCZ9_RICCO (Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_1282630 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-20
Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYFNL KN+A+GA          K++ S KQ+KQTE+   EK ++ A  +T
Sbjct: 180 VTKKSDLSDFYFNLGKNVAFGA----------KEIDSRKQEKQTELRKSEKLDDEAAGST 239

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
               + L  S    +S+R  EE+ H     + +  +       V   +  +  T V+E  
Sbjct: 240 SGRGRPLPDSKSIMESSRVNEEH-HDGTSPVPILPRRNSESSDVNPVSERKVDTSVQENT 299

Query: 131 KHEQG-EQQPKRDHHKRNEDAVAAAKERFLARKRAKE 167
             E+    QPK+DHHKRNED VAAAKERFLARK+AK+
Sbjct: 300 ATEEPLANQPKQDHHKRNEDTVAAAKERFLARKKAKQ 325

BLAST of Cla011049 vs. TrEMBL
Match: W9S8T2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006586 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.3e-20
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTE-VHILEKHEESANAN 70
           VTKK+D+SDFYFNL KN+A+GA          K ++S KQ+++ E +   +KH ++A A 
Sbjct: 166 VTKKTDLSDFYFNLGKNVAFGA----------KDIESRKQERRVEELRKPDKHGDAATAE 225

Query: 71  TFDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPS-----DIQVTS--PAMLRD 130
             D ++ +  S+    S++  EE+          S  + P      D++  S  P  + +
Sbjct: 226 ALDRNRSVNNSHSSVGSSKVREEHQSETSLRKQPSESSDPKPVSDPDVKPVSDTPVAVEE 285

Query: 131 KTRVEEQPKHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKE 167
            + V+E P     E+QPKR+HHKR EDA+AAAKERFLARKRAKE
Sbjct: 286 NSSVKEPP-----EEQPKREHHKRTEDALAAAKERFLARKRAKE 314

BLAST of Cla011049 vs. TrEMBL
Match: A0A067KH73_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10865 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19
Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYFNL KN+A+GA +           +S +Q++QTE+   EK ++  +A+T
Sbjct: 169 VTKKSDLSDFYFNLGKNVAFGANDR----------ESRQQERQTEIKKPEKLDDKLDAST 228

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
            D   LL  S    +S+  ++E  H +    S S+K     + +   +        +E+ 
Sbjct: 229 SDRGHLLADSKSVFESSSRVKEG-HGDETSSSPSHKRNSESLVLMPVSDKPASNSSQEKT 288

Query: 131 KHEQG-EQQPKRDHHKRNEDAVAAAKERFLARKRAKE 167
             EQ    QP  DHHKRNEDA+AAAKERFLARK+AK+
Sbjct: 289 SSEQPIANQPMNDHHKRNEDALAAAKERFLARKKAKQ 314

BLAST of Cla011049 vs. NCBI nr
Match: gi|449470301|ref|XP_004152856.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 2.3e-60
Identity = 123/157 (78.34%), Postives = 136/157 (86.62%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYF+LQKN+AYGARNAIEP  PPKKLQ EK++KQTEVHILEKHEES N +T
Sbjct: 168 VTKKSDMSDFYFSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDT 227

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
           F+DH LL+ SNLPS S +TIEE+PHLE E L  SNKTTPS+I+ TSP  L DKT V+EQP
Sbjct: 228 FNDH-LLQNSNLPSCSEKTIEEHPHLE-ERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQP 287

Query: 131 KHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKEV 168
           KHEQ EQ PK DHHKRNEDAVAAAKERFLARKRAKEV
Sbjct: 288 KHEQSEQPPKSDHHKRNEDAVAAAKERFLARKRAKEV 322

BLAST of Cla011049 vs. NCBI nr
Match: gi|659069555|ref|XP_008450616.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 117/157 (74.52%), Postives = 131/157 (83.44%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYF+LQKN+AYGARNAIEPR  PKKLQ EK++KQTEVHILEKHEES N +T
Sbjct: 180 VTKKSDMSDFYFSLQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDT 239

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
           F+DHQL        Q+++TIEE+ HLE E LS SNKTTPSDI+ TSP  L DK  V+E+P
Sbjct: 240 FNDHQL--------QNSKTIEEHSHLE-ERLSASNKTTPSDIEGTSPPTLHDKALVQERP 299

Query: 131 KHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKEV 168
           KHE  EQ PKRDHHKRNEDAVAAAKERFLARKRAKEV
Sbjct: 300 KHELSEQPPKRDHHKRNEDAVAAAKERFLARKRAKEV 327

BLAST of Cla011049 vs. NCBI nr
Match: gi|1009171164|ref|XP_015866594.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Ziziphus jujuba])

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 69/165 (41.82%), Postives = 94/165 (56.97%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKK+D+SDFYFNL KN+A+GAR+A          +  KQ+KQ E+   EKH    +A T
Sbjct: 166 VTKKTDLSDFYFNLGKNVAFGARDA----------ELRKQEKQDELRKAEKHGVETHATT 225

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRV---- 130
            D ++    SN  S+S+R  EE+        S+S ++  S+++  S   L   + V    
Sbjct: 226 LDKNRSSNTSNSVSESSRVREEH----RGETSISERSESSEVKTVSKTTLSGSSEVKPTT 285

Query: 131 -----EEQPKHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKE 167
                +     +   +QPK  HHKR+EDAVAAAKERFLARKRAKE
Sbjct: 286 NMTVPDNSSVGQPAVEQPKTHHHKRSEDAVAAAKERFLARKRAKE 316

BLAST of Cla011049 vs. NCBI nr
Match: gi|590586457|ref|XP_007015711.1| (Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20
Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYFNL KN+A+GA N + PR P K  +S K +K+ E  I          + 
Sbjct: 169 VTKKSDLSDFYFNLGKNVAFGA-NEVGPRMPEKHTESRKPEKKDEKEI----------DV 228

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
               Q L  SN P  S  T              S  + P  + V     L++ + V+ QP
Sbjct: 229 IKRVQPLPNSNAPESSGVTDRTQDETSSRENFESQDSRPITVDVLPETALQETSSVK-QP 288

Query: 131 KHEQGEQQPKRDHHKRNEDAVAAAKERFLARKRAKE 167
             +Q    PKRDHHKR EDAVAAA+ERFLARKRAKE
Sbjct: 289 SVDQ----PKRDHHKRGEDAVAAARERFLARKRAKE 308

BLAST of Cla011049 vs. NCBI nr
Match: gi|255565757|ref|XP_002523868.1| (PREDICTED: nuclear speckle splicing regulatory protein 1 isoform X1 [Ricinus communis])

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 1

Query: 11  VTKKSDISDFYFNLQKNIAYGARNAIEPREPPKKLQSEKQQKQTEVHILEKHEESANANT 70
           VTKKSD+SDFYFNL KN+A+GA          K++ S KQ+KQTE+   EK ++ A  +T
Sbjct: 180 VTKKSDLSDFYFNLGKNVAFGA----------KEIDSRKQEKQTELRKSEKLDDEAAGST 239

Query: 71  FDDHQLLKYSNLPSQSARTIEENPHLEHEHLSVSNKTTPSDIQVTSPAMLRDKTRVEEQP 130
               + L  S    +S+R  EE+ H     + +  +       V   +  +  T V+E  
Sbjct: 240 SGRGRPLPDSKSIMESSRVNEEH-HDGTSPVPILPRRNSESSDVNPVSERKVDTSVQENT 299

Query: 131 KHEQG-EQQPKRDHHKRNEDAVAAAKERFLARKRAKE 167
             E+    QPK+DHHKRNED VAAAKERFLARK+AK+
Sbjct: 300 ATEEPLANQPKQDHHKRNEDTVAAAKERFLARKKAKQ 325

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LJE9_CUCSA1.6e-6078.34Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1[more]
A0A061GV10_THECC2.1e-2044.23Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao ... [more]
B9SCZ9_RICCO4.8e-2042.68Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_1282... [more]
W9S8T2_9ROSA6.3e-2040.24Uncharacterized protein OS=Morus notabilis GN=L484_006586 PE=4 SV=1[more]
A0A067KH73_JATCU1.8e-1940.76Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10865 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449470301|ref|XP_004152856.1|2.3e-6078.34PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus][more]
gi|659069555|ref|XP_008450616.1|1.2e-5674.52PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo][more]
gi|1009171164|ref|XP_015866594.1|1.9e-2241.82PREDICTED: nuclear speckle splicing regulatory protein 1-like [Ziziphus jujuba][more]
gi|590586457|ref|XP_007015711.1|3.1e-2044.23Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao][more]
gi|255565757|ref|XP_002523868.1|6.9e-2042.68PREDICTED: nuclear speckle splicing regulatory protein 1 isoform X1 [Ricinus com... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU13113watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011049Cla011049.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU13113WMU13113transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR30060INNER MEMBRANE PROTEINcoord: 9..167
score: 1.5
NoneNo IPR availablePANTHERPTHR30060:SF0COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 9..167
score: 1.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None