Cla009530.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009530
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 15367407 .. 15369997 (+)
Sequence length	672

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGGATGTCTCCACCAAAACGAAAACCAAAGAGAACAAAACAAGCAAATTTTATTGTTGCAACAGAATCAAGACGTCTTCAAGGAAGATTTCTCCAATCTCTGGGTTATTACTAGTCTCTTTTTGTTTAATGAATGGAGAGATATCGTCGATGCTTTGGAAGCTCACTTCAGTGTTAAATTCATTATTAACCCATTGTGTGCTGAAAAAGCTTTGATTAAAACGGATCAGAAACTTGAAGATTTAATCAAAGTTCTGGGTAAATGGAAAGTCTTTAGACAGTTTCATTTACTCTTTGAGAAATGGAACACATATCGACATAGTAGACCATCGGTAATCAAAGGATTTGGCGGTTGGATCAACATTAAAAATCTTCCTTTAGAATATTGGAGTAGAGGAACGTTTGAAGCTATTGGTGCACACTTTGGTGGGTTGGAAAACATAGCTATTGAAACTTTGAACCTTCTCAATGTATCAGAAGCCAAAATTCAAGTAAGAAAAAACCGTTGTGGATTCATGCCAGCTTCAATTGAGATTAAAGACGAGAAAAGAGGCAACATTTTCTTTAACTTTGGTGATATTGAACTCGTTGAAGCCTCTCAGGATTTTCAAGTTGCTTGAAGTCTTAAGGATTTCTCTAATCCGATTGATTTAATTCGATTAAAGGAGGTAGCACAAGACGATGATCTGGAGTTTAACTTCCCAATTCAAGATTGGGAGTACCTTTCACAGAATAAGACAAGCTTCTCAAGAAACCCTACCATAATTGATCCTTCACAAGATTTGAAGAAATCACCGGAGAAACCATCGGAGATCATTCATCCCTCACCGGAAAATGGATTACTCCCCTCGGCCATTGATATTCCCAAGATCTCATTGAAAAGCCAGCAGCCTAGTGTGAACGCTCCTTATACGAAATCATTATTTGAAGCCGAAAAGCCCAATTTTTTGAGGAAAGAGAAAGCATTAAATTGTTATTATCCTTCTAAGGAAGTCCAACCGGTCCCAGCTGCCAAGGATGCTTCACCTCCCAAAAACTCCAGCCCCACGCCTTTAATGGTACCCATTCCCCTCGGTTCTCCAGCCAACGAAAGTTCCTCTCTCTCCAAATTAAATTTACGTCCCTCTGCCTTAATAAAGAAAAAGAAACCGTTGGAGTCTCTTTCCTCTGAGCATTTATTGGGGGGACAAAGAACAACCGGTTCTACAAGTCTTTTCGACTTCCCAACAAATCTCTCAACCGCCAATCTAGGATTAAAAGCAAATTTGTCTGAAGGAATTGGTAAGACAGGCAGCGCATTTGACTCTATTATGACCGTTCAACTTCAAAACTTTAATGATTTTATTAATTGCCCCTACCAAATTCTTTCAGATCCCAACATTCCTCTGAGGTTCATCAAAAAACCCTGCCCCTTCAGCTGTCATTTAGCTTCCACCGAAGAGGCCTCCATCCTTTCAATTCCTTCTCGGCTAGACACTCTCCACCACATTAAACCACTCGAAGACACTGAAGAAAAAGTTGAAGGAAGCTCTCTTAAACTACCTGAAACCTCTATTCTTCCCCACTATCTTCAAAATAAATCCGCAACTTTGTTAAACCCTTATCCCAAGCATTTTCTAGAAAGAAGAAGCATTCTATTAATTTTAGAAGTATGGTTAGTCCCTCAGATTTGTTGGAAGAAAGTTGCACTCGAGCCTTAGTTCCATCCCTCTCATTGAAGTCCGTTCAGAAATCCTCCCCTCCTCACCAATTCAAGCAATCAATCCTTCATTTTCCCAATCACAATTCAAAATTTCGGCGAGACACCAGGCTTTCCTCTCCAAGCCATAAGAAGGAAAAAGAGTTCGACTCCGATATTGATTCAATTGCTAGTGCTAGTAGCGAAGATCTAGAAAAAGTGGAAGAAGAAGTTTTCCCAGACTCCTTAGATCAAAAGATCAATTATTCGGAGGAGTTGAATGCTCTCTTCCAATTAAAAGAAAAGAGTCAAGAAGGTGAAAGGGGGAGGAGCGTTCGTAAAAAATCATTCCCTTCTTCGGTTATTCCCGAGCATTTAAGGTCCTTTGTTGCTGAGTGTGGACTGGTTTTGATTTAATCATTCTTTTCTCATCAAGTTTGGCTTTCCCACTGGCATTTATAGATTGAAGAACAGCAGAGGTTATATACTAACCAGCTTATATACTAAGCTGAAAACAACCTAGAATTATCCTAAAATTACAGATTTGCCCTCTTGAAAGAAGTCACCACATAGGTAACTTGATATATAGAAAATTACAAAAATACTGCTATTTAAAAAAAAAACAGTTGCTGAATCATCAAAATTACATCAAATTCCCTTTGTGCAAGTAAAAAGAAATCGCCTGGAAACTTGTGCAGACTTGGTCGGCCGGCGGAGAGGAGGTGAACCCAGGCGGTGTCGGCGTCGGCGTCGGTGTTGGTGTCGGCTAGCTTCACTCGCGATTTGTTCGGCGTCTGGGCTTCACAGACGACCGGTGCTGGAGTTGTCCTGAGATGTCCAGCGAATGTCTGTGACAGTGGTGAGTCGGCGGCGGTGGCGGTGGCAGTGGCGTTGGCGGCAGATTAG

mRNA sequence

ATGATGAAAGGATGTCTCCACCAAAACGAAAACCAAAGAGAACAAAACAAGCAAATTTTATTGTTGCAACAGAATCAAGACGTCTTCAAGGAAGATTTCTCCAATCTCTGGGTTATTACTAGTCTCTTTTTGTTTAATGAATGGAGAGATATCGTCGATGCTTTGGAAGCTCACTTCAGTGTTAAATTCATTATTAACCCATTGTGTGCTGAAAAAGCTTTGATTAAAACGGATCAGAAACTTGAAGATTTAATCAAAGTTCTGGGTAAATGGAAAGTCTTTAGACAGTTTCATTTACTCTTTGAGAAATGGAACACATATCGACATAGTAGACCATCGGTAATCAAAGGATTTGGCGGTTGGATCAACATTAAAAATCTTCCTTTAGAATATTGGAGTAGAGGAACGTTTGAAGCTATTGGTGCACACTTTGGTGGGTTGGAAAACATAGCTATTGAAACTTTGAACCTTCTCAATGTATCAGAAGCCAAAATTCAAGCGGTGTCGGCGTCGGCGTCGGTGTTGGTGTCGGCTAGCTTCACTCGCGATTTGTTCGGCGTCTGGGCTTCACAGACGACCGGTGCTGGAGTTGTCCTGAGATGTCCAGCGAATGTCTGTGACAGTGGTGAGTCGGCGGCGGTGGCGGTGGCAGTGGCGTTGGCGGCAGATTAG

Coding sequence (CDS)

ATGATGAAAGGATGTCTCCACCAAAACGAAAACCAAAGAGAACAAAACAAGCAAATTTTATTGTTGCAACAGAATCAAGACGTCTTCAAGGAAGATTTCTCCAATCTCTGGGTTATTACTAGTCTCTTTTTGTTTAATGAATGGAGAGATATCGTCGATGCTTTGGAAGCTCACTTCAGTGTTAAATTCATTATTAACCCATTGTGTGCTGAAAAAGCTTTGATTAAAACGGATCAGAAACTTGAAGATTTAATCAAAGTTCTGGGTAAATGGAAAGTCTTTAGACAGTTTCATTTACTCTTTGAGAAATGGAACACATATCGACATAGTAGACCATCGGTAATCAAAGGATTTGGCGGTTGGATCAACATTAAAAATCTTCCTTTAGAATATTGGAGTAGAGGAACGTTTGAAGCTATTGGTGCACACTTTGGTGGGTTGGAAAACATAGCTATTGAAACTTTGAACCTTCTCAATGTATCAGAAGCCAAAATTCAAGCGGTGTCGGCGTCGGCGTCGGTGTTGGTGTCGGCTAGCTTCACTCGCGATTTGTTCGGCGTCTGGGCTTCACAGACGACCGGTGCTGGAGTTGTCCTGAGATGTCCAGCGAATGTCTGTGACAGTGGTGAGTCGGCGGCGGTGGCGGTGGCAGTGGCGTTGGCGGCAGATTAG

Protein sequence

MMKGCLHQNENQREQNKQILLLQQNQDVFKEDFSNLWVITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIKTDQKLEDLIKVLGKWKVFRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIETLNLLNVSEAKIQAVSASASVLVSASFTRDLFGVWASQTTGAGVVLRCPANVCDSGESAAVAVAVALAAD

Homology

[Close]

BLAST of Cla009530 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 38  VITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIK-TDQKLEDLIKVLGKWKVFRQ 97
           V+T  +  ++W  IV+ L           P  A KALI   D +  +LI     W    +
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 98  FHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIETLN 157
           F++ FE+WN   H+ P  +  +GGWI ++ +PL  W+  +F  IG   GG   +A ET  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 158 LLNVSEAKIQ 167
           L ++ EA I+
Sbjct: 253 LTDLIEASIR 262

[Close]

BLAST of Cla009530 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-08
Identity = 29/98 (29.59%), Postives = 50/98 (51.02%), Query Frame = 1


Query: 70  AEKALIKTDQKLEDLIKVLGK-WKVFRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLP 129
           AEKAL+  + K +  I    + W    +F++ FE+WNT +H  P ++  +GGW+N + + 
Sbjct: 19  AEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGGWVNFRGIL 78

Query: 130 LEYWSRGTFEAIGAHFGGLENIAIETLNLLNVSEAKIQ 167
           +  W   TF  IG   G    I  E    + + +A ++
Sbjct: 79  MHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLK 116

[Close]

BLAST of Cla009530 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 35  NLWVITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIKTDQKLEDLIKVLGK-WKV 94
           N  VI   F  ++W  I+  L       F  N   A+KAL+     +   +    K W  
Sbjct: 203 NTVVIIRRFFHDDWYKILQNLRKQTEESFTYNAFHADKALVHFSSSIPANLLCQNKGWTT 262

Query: 95  FRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIE 154
             ++ + FEKW   +H+ P +I  +GGW   + +PL  W+  TF+ IG   GGL  +A E
Sbjct: 263 VGKYSVRFEKWCPIQHATPKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEE 322

Query: 155 TLNLLNVSEAKIQ 167
           T +  N+ EAKI+
Sbjct: 323 TRSAKNLIEAKIK 335

[Close]

BLAST of Cla009530 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 38  VITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIK-TDQKLEDLIKVLGKWKVFRQ 97
           V+T  +  ++W  IV+ L           P  A KALI   D +  +LI     W    +
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 98  FHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIETLN 157
           F++ FE+WN   H+ P  +  +GGWI ++ +PL  W+  +F  IG   GG   +A ET  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 158 LLNVSEAKIQ 167
           L ++ EA I+
Sbjct: 253 LTDLIEASIR 262

[Close]

BLAST of Cla009530 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 29/98 (29.59%), Postives = 50/98 (51.02%), Query Frame = 1


Query: 70  AEKALIKTDQKLEDLIKVLGK-WKVFRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLP 129
           AEKAL+  + K +  I    + W    +F++ FE+WNT +H  P ++  +GGW+N + + 
Sbjct: 19  AEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGGWVNFRGIL 78

Query: 130 LEYWSRGTFEAIGAHFGGLENIAIETLNLLNVSEAKIQ 167
           +  W   TF  IG   G    I  E    + + +A ++
Sbjct: 79  MHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLK 116

The following BLAST results are available for this feature:

BLAST of Cla009530 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	1.9e-11	32.31	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	9.6e-08	29.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]

BLAST of Cla009530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071590\|ref\|XP_008460776.1\|	7.0e-12	32.33	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|307135793\|gb\|ADN33672.1\|	2.7e-11	32.31	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700192460\|gb\|KGN47664.1\|	1.4e-07	29.59	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla009530	Cla009530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla009530	Cla009530.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla009530.1.cds1	Cla009530.1.cds1	CDS
Cla009530.1.cds2	Cla009530.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 80..165 score: 5.