Cla009530 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009530
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 15367407 .. 15369997 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGGATGTCTCCACCAAAACGAAAACCAAAGAGAACAAAACAAGCAAATTTTATTGTTGCAACAGAATCAAGACGTCTTCAAGGAAGATTTCTCCAATCTCTGGGTTATTACTAGTCTCTTTTTGTTTAATGAATGGAGAGATATCGTCGATGCTTTGGAAGCTCACTTCAGTGTTAAATTCATTATTAACCCATTGTGTGCTGAAAAAGCTTTGATTAAAACGGATCAGAAACTTGAAGATTTAATCAAAGTTCTGGGTAAATGGAAAGTCTTTAGACAGTTTCATTTACTCTTTGAGAAATGGAACACATATCGACATAGTAGACCATCGGTAATCAAAGGATTTGGCGGTTGGATCAACATTAAAAATCTTCCTTTAGAATATTGGAGTAGAGGAACGTTTGAAGCTATTGGTGCACACTTTGGTGGGTTGGAAAACATAGCTATTGAAACTTTGAACCTTCTCAATGTATCAGAAGCCAAAATTCAAGTAAGAAAAAACCGTTGTGGATTCATGCCAGCTTCAATTGAGATTAAAGACGAGAAAAGAGGCAACATTTTCTTTAACTTTGGTGATATTGAACTCGTTGAAGCCTCTCAGGATTTTCAAGTTGCTTGAAGTCTTAAGGATTTCTCTAATCCGATTGATTTAATTCGATTAAAGGAGGTAGCACAAGACGATGATCTGGAGTTTAACTTCCCAATTCAAGATTGGGAGTACCTTTCACAGAATAAGACAAGCTTCTCAAGAAACCCTACCATAATTGATCCTTCACAAGATTTGAAGAAATCACCGGAGAAACCATCGGAGATCATTCATCCCTCACCGGAAAATGGATTACTCCCCTCGGCCATTGATATTCCCAAGATCTCATTGAAAAGCCAGCAGCCTAGTGTGAACGCTCCTTATACGAAATCATTATTTGAAGCCGAAAAGCCCAATTTTTTGAGGAAAGAGAAAGCATTAAATTGTTATTATCCTTCTAAGGAAGTCCAACCGGTCCCAGCTGCCAAGGATGCTTCACCTCCCAAAAACTCCAGCCCCACGCCTTTAATGGTACCCATTCCCCTCGGTTCTCCAGCCAACGAAAGTTCCTCTCTCTCCAAATTAAATTTACGTCCCTCTGCCTTAATAAAGAAAAAGAAACCGTTGGAGTCTCTTTCCTCTGAGCATTTATTGGGGGGACAAAGAACAACCGGTTCTACAAGTCTTTTCGACTTCCCAACAAATCTCTCAACCGCCAATCTAGGATTAAAAGCAAATTTGTCTGAAGGAATTGGTAAGACAGGCAGCGCATTTGACTCTATTATGACCGTTCAACTTCAAAACTTTAATGATTTTATTAATTGCCCCTACCAAATTCTTTCAGATCCCAACATTCCTCTGAGGTTCATCAAAAAACCCTGCCCCTTCAGCTGTCATTTAGCTTCCACCGAAGAGGCCTCCATCCTTTCAATTCCTTCTCGGCTAGACACTCTCCACCACATTAAACCACTCGAAGACACTGAAGAAAAAGTTGAAGGAAGCTCTCTTAAACTACCTGAAACCTCTATTCTTCCCCACTATCTTCAAAATAAATCCGCAACTTTGTTAAACCCTTATCCCAAGCATTTTCTAGAAAGAAGAAGCATTCTATTAATTTTAGAAGTATGGTTAGTCCCTCAGATTTGTTGGAAGAAAGTTGCACTCGAGCCTTAGTTCCATCCCTCTCATTGAAGTCCGTTCAGAAATCCTCCCCTCCTCACCAATTCAAGCAATCAATCCTTCATTTTCCCAATCACAATTCAAAATTTCGGCGAGACACCAGGCTTTCCTCTCCAAGCCATAAGAAGGAAAAAGAGTTCGACTCCGATATTGATTCAATTGCTAGTGCTAGTAGCGAAGATCTAGAAAAAGTGGAAGAAGAAGTTTTCCCAGACTCCTTAGATCAAAAGATCAATTATTCGGAGGAGTTGAATGCTCTCTTCCAATTAAAAGAAAAGAGTCAAGAAGGTGAAAGGGGGAGGAGCGTTCGTAAAAAATCATTCCCTTCTTCGGTTATTCCCGAGCATTTAAGGTCCTTTGTTGCTGAGTGTGGACTGGTTTTGATTTAATCATTCTTTTCTCATCAAGTTTGGCTTTCCCACTGGCATTTATAGATTGAAGAACAGCAGAGGTTATATACTAACCAGCTTATATACTAAGCTGAAAACAACCTAGAATTATCCTAAAATTACAGATTTGCCCTCTTGAAAGAAGTCACCACATAGGTAACTTGATATATAGAAAATTACAAAAATACTGCTATTTAAAAAAAAAACAGTTGCTGAATCATCAAAATTACATCAAATTCCCTTTGTGCAAGTAAAAAGAAATCGCCTGGAAACTTGTGCAGACTTGGTCGGCCGGCGGAGAGGAGGTGAACCCAGGCGGTGTCGGCGTCGGCGTCGGTGTTGGTGTCGGCTAGCTTCACTCGCGATTTGTTCGGCGTCTGGGCTTCACAGACGACCGGTGCTGGAGTTGTCCTGAGATGTCCAGCGAATGTCTGTGACAGTGGTGAGTCGGCGGCGGTGGCGGTGGCAGTGGCGTTGGCGGCAGATTAG

mRNA sequence

ATGATGAAAGGATGTCTCCACCAAAACGAAAACCAAAGAGAACAAAACAAGCAAATTTTATTGTTGCAACAGAATCAAGACGTCTTCAAGGAAGATTTCTCCAATCTCTGGGTTATTACTAGTCTCTTTTTGTTTAATGAATGGAGAGATATCGTCGATGCTTTGGAAGCTCACTTCAGTGTTAAATTCATTATTAACCCATTGTGTGCTGAAAAAGCTTTGATTAAAACGGATCAGAAACTTGAAGATTTAATCAAAGTTCTGGGTAAATGGAAAGTCTTTAGACAGTTTCATTTACTCTTTGAGAAATGGAACACATATCGACATAGTAGACCATCGGTAATCAAAGGATTTGGCGGTTGGATCAACATTAAAAATCTTCCTTTAGAATATTGGAGTAGAGGAACGTTTGAAGCTATTGGTGCACACTTTGGTGGGTTGGAAAACATAGCTATTGAAACTTTGAACCTTCTCAATGTATCAGAAGCCAAAATTCAAGCGGTGTCGGCGTCGGCGTCGGTGTTGGTGTCGGCTAGCTTCACTCGCGATTTGTTCGGCGTCTGGGCTTCACAGACGACCGGTGCTGGAGTTGTCCTGAGATGTCCAGCGAATGTCTGTGACAGTGGTGAGTCGGCGGCGGTGGCGGTGGCAGTGGCGTTGGCGGCAGATTAG

Coding sequence (CDS)

ATGATGAAAGGATGTCTCCACCAAAACGAAAACCAAAGAGAACAAAACAAGCAAATTTTATTGTTGCAACAGAATCAAGACGTCTTCAAGGAAGATTTCTCCAATCTCTGGGTTATTACTAGTCTCTTTTTGTTTAATGAATGGAGAGATATCGTCGATGCTTTGGAAGCTCACTTCAGTGTTAAATTCATTATTAACCCATTGTGTGCTGAAAAAGCTTTGATTAAAACGGATCAGAAACTTGAAGATTTAATCAAAGTTCTGGGTAAATGGAAAGTCTTTAGACAGTTTCATTTACTCTTTGAGAAATGGAACACATATCGACATAGTAGACCATCGGTAATCAAAGGATTTGGCGGTTGGATCAACATTAAAAATCTTCCTTTAGAATATTGGAGTAGAGGAACGTTTGAAGCTATTGGTGCACACTTTGGTGGGTTGGAAAACATAGCTATTGAAACTTTGAACCTTCTCAATGTATCAGAAGCCAAAATTCAAGCGGTGTCGGCGTCGGCGTCGGTGTTGGTGTCGGCTAGCTTCACTCGCGATTTGTTCGGCGTCTGGGCTTCACAGACGACCGGTGCTGGAGTTGTCCTGAGATGTCCAGCGAATGTCTGTGACAGTGGTGAGTCGGCGGCGGTGGCGGTGGCAGTGGCGTTGGCGGCAGATTAG

Protein sequence

MMKGCLHQNENQREQNKQILLLQQNQDVFKEDFSNLWVITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIKTDQKLEDLIKVLGKWKVFRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIETLNLLNVSEAKIQAVSASASVLVSASFTRDLFGVWASQTTGAGVVLRCPANVCDSGESAAVAVAVALAAD

Homology

[Close]

BLAST of Cla009530 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 38  VITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIK-TDQKLEDLIKVLGKWKVFRQ 97
           V+T  +  ++W  IV+ L           P  A KALI   D +  +LI     W    +
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 98  FHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIETLN 157
           F++ FE+WN   H+ P  +  +GGWI ++ +PL  W+  +F  IG   GG   +A ET  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 158 LLNVSEAKIQ 167
           L ++ EA I+
Sbjct: 253 LTDLIEASIR 262

[Close]

BLAST of Cla009530 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-08
Identity = 29/98 (29.59%), Postives = 50/98 (51.02%), Query Frame = 1


Query: 70  AEKALIKTDQKLEDLIKVLGK-WKVFRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLP 129
           AEKAL+  + K +  I    + W    +F++ FE+WNT +H  P ++  +GGW+N + + 
Sbjct: 19  AEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGGWVNFRGIL 78

Query: 130 LEYWSRGTFEAIGAHFGGLENIAIETLNLLNVSEAKIQ 167
           +  W   TF  IG   G    I  E    + + +A ++
Sbjct: 79  MHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLK 116

[Close]

BLAST of Cla009530 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 35  NLWVITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIKTDQKLEDLIKVLGK-WKV 94
           N  VI   F  ++W  I+  L       F  N   A+KAL+     +   +    K W  
Sbjct: 203 NTVVIIRRFFHDDWYKILQNLRKQTEESFTYNAFHADKALVHFSSSIPANLLCQNKGWTT 262

Query: 95  FRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIE 154
             ++ + FEKW   +H+ P +I  +GGW   + +PL  W+  TF+ IG   GGL  +A E
Sbjct: 263 VGKYSVRFEKWCPIQHATPKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEE 322

Query: 155 TLNLLNVSEAKIQ 167
           T +  N+ EAKI+
Sbjct: 323 TRSAKNLIEAKIK 335

[Close]

BLAST of Cla009530 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 38  VITSLFLFNEWRDIVDALEAHFSVKFIINPLCAEKALIK-TDQKLEDLIKVLGKWKVFRQ 97
           V+T  +  ++W  IV+ L           P  A KALI   D +  +LI     W    +
Sbjct: 133 VLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGR 192

Query: 98  FHLLFEKWNTYRHSRPSVIKGFGGWINIKNLPLEYWSRGTFEAIGAHFGGLENIAIETLN 157
           F++ FE+WN   H+ P  +  +GGWI ++ +PL  W+  +F  IG   GG   +A ET  
Sbjct: 193 FYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRE 252

Query: 158 LLNVSEAKIQ 167
           L ++ EA I+
Sbjct: 253 LTDLIEASIR 262

[Close]

BLAST of Cla009530 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 29/98 (29.59%), Postives = 50/98 (51.02%), Query Frame = 1


Query: 70  AEKALIKTDQKLEDLIKVLGK-WKVFRQFHLLFEKWNTYRHSRPSVIKGFGGWINIKNLP 129
           AEKAL+  + K +  I    + W    +F++ FE+WNT +H  P ++  +GGW+N + + 
Sbjct: 19  AEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGGWVNFRGIL 78

Query: 130 LEYWSRGTFEAIGAHFGGLENIAIETLNLLNVSEAKIQ 167
           +  W   TF  IG   G    I  E    + + +A ++
Sbjct: 79  MHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLK 116

The following BLAST results are available for this feature:

BLAST of Cla009530 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	1.9e-11	32.31	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	9.6e-08	29.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]

BLAST of Cla009530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071590\|ref\|XP_008460776.1\|	7.0e-12	32.33	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|307135793\|gb\|ADN33672.1\|	2.7e-11	32.31	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700192460\|gb\|KGN47664.1\|	1.4e-07	29.59	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009530	Cla009530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 80..165 score: 5.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009530	Cucurbita pepo (Zucchini)	cpewmB006
Cla009530	Cucurbita pepo (Zucchini)	cpewmB350
Cla009530	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009530	Cucumber (Gy14) v2	cgybwmB013
Cla009530	Melon (DHL92) v3.6.1	medwmB254
Cla009530	Silver-seed gourd	carwmB0531
Cla009530	Silver-seed gourd	carwmB0970
Cla009530	Cucumber (Chinese Long) v3	cucwmB016
Cla009530	Watermelon (97103) v2	wmwmbB126
Cla009530	Wax gourd	wgowmB661
Cla009530	Cucumber (Gy14) v1	cgywmB638
Cla009530	Cucurbita maxima (Rimu)	cmawmB051
Cla009530	Cucurbita maxima (Rimu)	cmawmB093
Cla009530	Cucurbita moschata (Rifu)	cmowmB043
Cla009530	Cucurbita moschata (Rifu)	cmowmB084
Cla009530	Melon (DHL92) v3.5.1	mewmB263
Cla009530	Watermelon (Charleston Gray)	wcgwmB225
Cla009530	Cucumber (Chinese Long) v2	cuwmB011