Cla008017.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCCGCCTTCAAGAAAATCACAGGATGGCTCAAAGTTCAATAAGCATTCCAAGAAGCCATTCAAGTCGAAGAAGAAAACGAGTGAAATAGCTAACGCCGAAGCTATATCGTTGCAGATTGAAGATGATGTTCCTGACTTTCCTAGAGGTGAGCTTCGACTCTGACCTTTTGTTTGATCTTCTAGAAGTTGCCTTGTGTGAATATGAACTGTCCATTATTATGCTTTTGGGGTTCTATTGGAAAGCACGATCAGTTGGGAAGTTAATTTTAGTTAATGCTTCAATATTCTCTCCCGATTAAATGGAATTTATGTTCTACATAAGAATAGCTTGGAAGACTTGGTTTGGACCGTTTGGTTGTTTTCAACAATGATTCTAATTTGAAGGAAATCCAATGAATATAAAATATATGAATTTTTCATAATAATATTTAGGCCCTTAAGTCTGACGGTTTTTATGGTTAGGTACTTTTCTAATGTCGTACTGAGTTACTTCAATTTACAGGTGGAGGAGGTTATTTAAGCCAAAAAAAGGGGGAAAAAGTACGTACCCAAGGAGATAAGGAGTTTCAGAATGATGATCTGAGGATGACAACAAAAAGAGGAAAGATGAGAAGAAAGCATCCGTCAAATGGGGATGATTTGGAATCCTTGTTGAACAATGGTGTAGTGGGAAACCTTCCTAAATATGCAAATAAGATAACTTTGAAGGTATGGCCTGTAACAGTTCAGTTTGCTATATATATCAAAGGAGGAGTAAAGTCTTTAAACATCATAGATTATCATATGTTATAA ATGGCTCCGCCTTCAAGAAAATCACAGGATGGCTCAAAGTTCAATAAGCATTCCAAGAAGCCATTCAAGTCGAAGAAGAAAACGAGTGAAATAGCTAACGCCGAAGCTATATCGTTGCAGATTGAAGATGATGTTCCTGACTTTCCTAGAGGTGGAGGAGGTTATTTAAGCCAAAAAAAGGGGGAAAAAGTACGTACCCAAGGAGATAAGGAGTTTCAGAATGATGATCTGAGGATGACAACAAAAAGAGGAAAGATGAGAAGAAAGCATCCGTCAAATGGGGATGATTTGGAATCCTTGTTGAACAATGGTGTAGTGGGAAACCTTCCTAAATATGCAAATAAGATAACTTTGAAGGTATGGCCTGTAACAGTTCAGTTTGCTATATATATCAAAGGAGGAGTAAAGTCTTTAAACATCATAGATTATCATATGTTATAA ATGGCTCCGCCTTCAAGAAAATCACAGGATGGCTCAAAGTTCAATAAGCATTCCAAGAAGCCATTCAAGTCGAAGAAGAAAACGAGTGAAATAGCTAACGCCGAAGCTATATCGTTGCAGATTGAAGATGATGTTCCTGACTTTCCTAGAGGTGGAGGAGGTTATTTAAGCCAAAAAAAGGGGGAAAAAGTACGTACCCAAGGAGATAAGGAGTTTCAGAATGATGATCTGAGGATGACAACAAAAAGAGGAAAGATGAGAAGAAAGCATCCGTCAAATGGGGATGATTTGGAATCCTTGTTGAACAATGGTGTAGTGGGAAACCTTCCTAAATATGCAAATAAGATAACTTTGAAGGTATGGCCTGTAACAGTTCAGTTTGCTATATATATCAAAGGAGGAGTAAAGTCTTTAAACATCATAGATTATCATATGTTATAA MAPPSRKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKKGEKVRTQGDKEFQNDDLRMTTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKITLKVWPVTVQFAIYIKGGVKSLNIIDYHML
BLAST of Cla008017 vs. Swiss-Prot
Match: RRP5_ARATH (rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana GN=RRP5 PE=2 SV=2) HSP 1 Score: 93.2 bits (230), Expect = 2.5e-18 Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1
BLAST of Cla008017 vs. TrEMBL
Match: A0A0A0L3Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G553660 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 6.8e-55 Identity = 111/150 (74.00%), Postives = 120/150 (80.00%), Query Frame = 1
BLAST of Cla008017 vs. TrEMBL
Match: M5WBV4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000079mg PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 2.8e-24 Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 1
BLAST of Cla008017 vs. TrEMBL
Match: A0A067JDG7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03044 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 3.7e-24 Identity = 67/149 (44.97%), Postives = 96/149 (64.43%), Query Frame = 1
BLAST of Cla008017 vs. TrEMBL
Match: A0A059DJ38_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02507 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 6.2e-24 Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1
BLAST of Cla008017 vs. TrEMBL
Match: B9T014_RICCO (Programmed cell death protein, putative OS=Ricinus communis GN=RCOM_0036500 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 6.9e-23 Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 1
BLAST of Cla008017 vs. NCBI nr
Match: gi|778695089|ref|XP_011653922.1| (PREDICTED: protein RRP5 homolog [Cucumis sativus]) HSP 1 Score: 221.5 bits (563), Expect = 9.8e-55 Identity = 111/150 (74.00%), Postives = 120/150 (80.00%), Query Frame = 1
BLAST of Cla008017 vs. NCBI nr
Match: gi|659083148|ref|XP_008442208.1| (PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Cucumis melo]) HSP 1 Score: 210.3 bits (534), Expect = 2.3e-51 Identity = 110/150 (73.33%), Postives = 116/150 (77.33%), Query Frame = 1
BLAST of Cla008017 vs. NCBI nr
Match: gi|1009161447|ref|XP_015898902.1| (PREDICTED: rRNA biogenesis protein RRP5 [Ziziphus jujuba]) HSP 1 Score: 122.9 bits (307), Expect = 4.7e-25 Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = 1
BLAST of Cla008017 vs. NCBI nr
Match: gi|645271932|ref|XP_008241151.1| (PREDICTED: protein RRP5 homolog [Prunus mume]) HSP 1 Score: 119.8 bits (299), Expect = 4.0e-24 Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = 1
BLAST of Cla008017 vs. NCBI nr
Match: gi|595810342|ref|XP_007203056.1| (hypothetical protein PRUPE_ppa000079mg [Prunus persica]) HSP 1 Score: 119.8 bits (299), Expect = 4.0e-24 Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
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