Cla008017 (gene) Watermelon (97103) v1

NameCla008017
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRNA binding protein (AHRD V1 ***- F4J8K6_ARATH)
LocationChr4 : 1111929 .. 1112725 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCGCCTTCAAGAAAATCACAGGATGGCTCAAAGTTCAATAAGCATTCCAAGAAGCCATTCAAGTCGAAGAAGAAAACGAGTGAAATAGCTAACGCCGAAGCTATATCGTTGCAGATTGAAGATGATGTTCCTGACTTTCCTAGAGGTGAGCTTCGACTCTGACCTTTTGTTTGATCTTCTAGAAGTTGCCTTGTGTGAATATGAACTGTCCATTATTATGCTTTTGGGGTTCTATTGGAAAGCACGATCAGTTGGGAAGTTAATTTTAGTTAATGCTTCAATATTCTCTCCCGATTAAATGGAATTTATGTTCTACATAAGAATAGCTTGGAAGACTTGGTTTGGACCGTTTGGTTGTTTTCAACAATGATTCTAATTTGAAGGAAATCCAATGAATATAAAATATATGAATTTTTCATAATAATATTTAGGCCCTTAAGTCTGACGGTTTTTATGGTTAGGTACTTTTCTAATGTCGTACTGAGTTACTTCAATTTACAGGTGGAGGAGGTTATTTAAGCCAAAAAAAGGGGGAAAAAGTACGTACCCAAGGAGATAAGGAGTTTCAGAATGATGATCTGAGGATGACAACAAAAAGAGGAAAGATGAGAAGAAAGCATCCGTCAAATGGGGATGATTTGGAATCCTTGTTGAACAATGGTGTAGTGGGAAACCTTCCTAAATATGCAAATAAGATAACTTTGAAGGTATGGCCTGTAACAGTTCAGTTTGCTATATATATCAAAGGAGGAGTAAAGTCTTTAAACATCATAGATTATCATATGTTATAA

mRNA sequence

ATGGCTCCGCCTTCAAGAAAATCACAGGATGGCTCAAAGTTCAATAAGCATTCCAAGAAGCCATTCAAGTCGAAGAAGAAAACGAGTGAAATAGCTAACGCCGAAGCTATATCGTTGCAGATTGAAGATGATGTTCCTGACTTTCCTAGAGGTGGAGGAGGTTATTTAAGCCAAAAAAAGGGGGAAAAAGTACGTACCCAAGGAGATAAGGAGTTTCAGAATGATGATCTGAGGATGACAACAAAAAGAGGAAAGATGAGAAGAAAGCATCCGTCAAATGGGGATGATTTGGAATCCTTGTTGAACAATGGTGTAGTGGGAAACCTTCCTAAATATGCAAATAAGATAACTTTGAAGGTATGGCCTGTAACAGTTCAGTTTGCTATATATATCAAAGGAGGAGTAAAGTCTTTAAACATCATAGATTATCATATGTTATAA

Coding sequence (CDS)

ATGGCTCCGCCTTCAAGAAAATCACAGGATGGCTCAAAGTTCAATAAGCATTCCAAGAAGCCATTCAAGTCGAAGAAGAAAACGAGTGAAATAGCTAACGCCGAAGCTATATCGTTGCAGATTGAAGATGATGTTCCTGACTTTCCTAGAGGTGGAGGAGGTTATTTAAGCCAAAAAAAGGGGGAAAAAGTACGTACCCAAGGAGATAAGGAGTTTCAGAATGATGATCTGAGGATGACAACAAAAAGAGGAAAGATGAGAAGAAAGCATCCGTCAAATGGGGATGATTTGGAATCCTTGTTGAACAATGGTGTAGTGGGAAACCTTCCTAAATATGCAAATAAGATAACTTTGAAGGTATGGCCTGTAACAGTTCAGTTTGCTATATATATCAAAGGAGGAGTAAAGTCTTTAAACATCATAGATTATCATATGTTATAA

Protein sequence

MAPPSRKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKKGEKVRTQGDKEFQNDDLRMTTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKITLKVWPVTVQFAIYIKGGVKSLNIIDYHML
BLAST of Cla008017 vs. Swiss-Prot
Match: RRP5_ARATH (rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana GN=RRP5 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-18
Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1

Query: 7   KSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKKGEKVRT 66
           K  D +K  K  KKPFK K K    A +EA++LQ+E DVPDFPRGGG  LS+K+ EK+  
Sbjct: 12  KRNDSTKSFKPMKKPFK-KTKDDVAARSEAMALQLE-DVPDFPRGGGTSLSKKEREKLYE 71

Query: 67  QGDKEFQNDD-LRMTTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKITLK 120
           + D EF  D+ +   +K GK +++ PS+ DDL  L   G+ G  P+YANKIT K
Sbjct: 72  EVDAEFDADERVSKKSKGGKSKKRIPSDLDDLGLLFGGGLHGKRPRYANKITTK 123

BLAST of Cla008017 vs. TrEMBL
Match: A0A0A0L3Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G553660 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.8e-55
Identity = 111/150 (74.00%), Postives = 120/150 (80.00%), Query Frame = 1

Query: 1   MAPPSRKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKK 60
           MAPPSRKSQDGSKFNKHSK+PF SKKK SE A  E +SLQIEDDVPDFPRGGGGY+SQ K
Sbjct: 1   MAPPSRKSQDGSKFNKHSKRPFNSKKKMSETAKPETVSLQIEDDVPDFPRGGGGYMSQNK 60

Query: 61  GEKVRTQGDKEFQNDDLRMTTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKITL-- 120
           GEKVR +GDKEFQNDDL+MTTKRGK RRKHPSNGDDLESLLNNGVVGNLPKYANKITL  
Sbjct: 61  GEKVRAEGDKEFQNDDLKMTTKRGKKRRKHPSNGDDLESLLNNGVVGNLPKYANKITLKN 120

Query: 121 -----KVWPVTVQ-----FAIYIKGGVKSL 139
                K W V  +       I + GG++ L
Sbjct: 121 INPRMKFWGVVAEVNKKDLVISLPGGLRGL 150

BLAST of Cla008017 vs. TrEMBL
Match: M5WBV4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000079mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-24
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 1

Query: 6   RKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKKGEKVR 65
           +K++D  KFNK SKKPFK  K  ++ A +EA++LQ+EDDVPDFPRGGG  L++++ +++R
Sbjct: 12  KKARDPPKFNKSSKKPFKPNKDRNDTARSEAVTLQLEDDVPDFPRGGGSALNRQERDEIR 71

Query: 66  TQGDKEFQNDDLRM-TTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKIT------- 125
            + D EF+ ++  M   K+  M++K  S+ DD  SL  +G+ G LPKYANKIT       
Sbjct: 72  AEVDAEFEAEEREMKKRKKIGMQKKSLSSEDDFGSLFGDGITGKLPKYANKITMKNISAG 131

Query: 126 LKVWPVTVQ-----FAIYIKGGVKSL 139
           +KVW V  +       I + GG++ L
Sbjct: 132 MKVWGVVAEVNEKDLVISLPGGLRGL 157

BLAST of Cla008017 vs. TrEMBL
Match: A0A067JDG7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03044 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-24
Identity = 67/149 (44.97%), Postives = 96/149 (64.43%), Query Frame = 1

Query: 5   SRKSQDGSKFNKHSKKPFKSKKKTS-EIANAEAISLQIEDDVPDFPRGGGGYLSQKKGEK 64
           +RK +DG KFNK SKKPFK+KKK S +   +EAISLQ+EDDVPDFPRGGG  LSQ++ ++
Sbjct: 11  NRKLKDGPKFNKDSKKPFKAKKKDSNDTVPSEAISLQLEDDVPDFPRGGGSSLSQRERKE 70

Query: 65  VRTQGDKEFQNDD-LRMTTKRG-KMRRKHPSNGDDLESLLNNGVVGNLPKYANKITL--- 124
           +R + D EF+ ++ + +  K+G K++ K     DD  SL   G+ G LP++ANKITL   
Sbjct: 71  IRAEADAEFEAEERVSVMKKKGKKLQNKKHLETDDFGSLFGEGLTGKLPRFANKITLKNI 130

Query: 125 ----KVWPVTVQ-----FAIYIKGGVKSL 139
               K+W +  +       I + GG++ L
Sbjct: 131 SPGMKLWGLVAEVNEKDLVISLPGGLRGL 159

BLAST of Cla008017 vs. TrEMBL
Match: A0A059DJ38_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02507 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.2e-24
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1

Query: 1   MAPP--SRKSQ--DGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYL 60
           MAPP  SRK+Q  DG K  K S+KPFK+KK   E A  + ++LQ+EDDVPDFPRGGG  L
Sbjct: 1   MAPPPKSRKAQPRDGPKLAKDSRKPFKAKKNPGEAARQKPVALQLEDDVPDFPRGGGSLL 60

Query: 61  SQKKGEKVRTQGDKEFQNDDLRMTTKR-GKMRRKHPSNGDDLESLLNNGVVGNLPKYANK 120
           S+K+ E++  + D +F  D   +  K+  KM+++ P++ DDL SL  +G+ G LP++AN+
Sbjct: 61  SRKEREEIHAEVDSQFDADGRELKKKKTRKMQKRGPTSEDDLGSLFGDGMTGKLPRFANR 120

BLAST of Cla008017 vs. TrEMBL
Match: B9T014_RICCO (Programmed cell death protein, putative OS=Ricinus communis GN=RCOM_0036500 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.9e-23
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 1

Query: 4   PSRKSQD-GSKFNKHSKKPFKSKKKTSEIANA-EAISLQIEDDVPDFPRGGGGYLSQKKG 63
           P RKS+D G+KFNK SKKPFK+KKK S  A A EA++ Q+EDD P+FPRGG   LS+++ 
Sbjct: 12  PDRKSKDAGTKFNKASKKPFKAKKKGSNDAVAPEAMAFQLEDDAPEFPRGGASSLSRRER 71

Query: 64  EKVRTQGDKEFQNDD-----LRMTTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKI 123
           E++R + D EF++++     ++   K  K++ K  S  DDL SL  +G+ G LP++AN I
Sbjct: 72  EEIRAEVDAEFESEERSLMMMKKKNKGKKLQNKSHSEADDLGSLFGDGLTGKLPRFANNI 131

Query: 124 T-------LKVWPVTVQ-----FAIYIKGGVKSL 139
           T       +KVW V  +       I + GG++ L
Sbjct: 132 TFKNISPGMKVWGVVAEVNEKDLVISLPGGLRGL 165

BLAST of Cla008017 vs. NCBI nr
Match: gi|778695089|ref|XP_011653922.1| (PREDICTED: protein RRP5 homolog [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 9.8e-55
Identity = 111/150 (74.00%), Postives = 120/150 (80.00%), Query Frame = 1

Query: 1   MAPPSRKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKK 60
           MAPPSRKSQDGSKFNKHSK+PF SKKK SE A  E +SLQIEDDVPDFPRGGGGY+SQ K
Sbjct: 1   MAPPSRKSQDGSKFNKHSKRPFNSKKKMSETAKPETVSLQIEDDVPDFPRGGGGYMSQNK 60

Query: 61  GEKVRTQGDKEFQNDDLRMTTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKITL-- 120
           GEKVR +GDKEFQNDDL+MTTKRGK RRKHPSNGDDLESLLNNGVVGNLPKYANKITL  
Sbjct: 61  GEKVRAEGDKEFQNDDLKMTTKRGKKRRKHPSNGDDLESLLNNGVVGNLPKYANKITLKN 120

Query: 121 -----KVWPVTVQ-----FAIYIKGGVKSL 139
                K W V  +       I + GG++ L
Sbjct: 121 INPRMKFWGVVAEVNKKDLVISLPGGLRGL 150

BLAST of Cla008017 vs. NCBI nr
Match: gi|659083148|ref|XP_008442208.1| (PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.3e-51
Identity = 110/150 (73.33%), Postives = 116/150 (77.33%), Query Frame = 1

Query: 1   MAPPSRKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKK 60
           MAPPSRKSQDGSK NKHSKKPFKSKKKTSE A  E +SLQIEDDVPDFPRGGGGY+SQ K
Sbjct: 1   MAPPSRKSQDGSK-NKHSKKPFKSKKKTSETAKPETVSLQIEDDVPDFPRGGGGYISQNK 60

Query: 61  GEKVRTQGDKEFQNDDLRMTTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKITL-- 120
           GEKVR QGDKEFQNDD     KRGK RRKHPSNGDDLESLLNNGVVGNLPKYANKITL  
Sbjct: 61  GEKVRAQGDKEFQNDDXADDKKRGKKRRKHPSNGDDLESLLNNGVVGNLPKYANKITLKN 120

Query: 121 -----KVWPVTVQ-----FAIYIKGGVKSL 139
                K W V  +       I + GG++ L
Sbjct: 121 INPRMKFWGVVAEVNKKDLVISLPGGLRGL 149

BLAST of Cla008017 vs. NCBI nr
Match: gi|1009161447|ref|XP_015898902.1| (PREDICTED: rRNA biogenesis protein RRP5 [Ziziphus jujuba])

HSP 1 Score: 122.9 bits (307), Expect = 4.7e-25
Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = 1

Query: 5   SRKSQDGSKFNKHSKKPFKSKKKTSE--IANAEAISLQIEDDVPDFPRGGGGYLSQKKGE 64
           ++KS DG KFNK SKKPFK+KKK  E     +EA++LQ+EDDVPDFPRGGG YLSQK+ +
Sbjct: 11  NKKSGDGPKFNKSSKKPFKAKKKEGENDAVRSEAVALQLEDDVPDFPRGGGSYLSQKERD 70

Query: 65  KVRTQGDKEFQND--DLRMTTKRGKMRRKH-----PSNGDDLESLLNNGVVGNLPKYANK 124
           ++R + D EF+ +  DL+ T ++ K +RK+         DD  SL   G+ G LP++ANK
Sbjct: 71  EIRAEVDAEFEAEERDLKHTKEKKKKKRKNLEMKSREAEDDFGSLFGAGITGKLPRFANK 130

Query: 125 ITL-------KVWPVTVQ-----FAIYIKGGVKSL 139
           ITL       K+W V  +       I + GG++ L
Sbjct: 131 ITLKNISPGMKLWGVIAEVNEKDLVISLPGGLRGL 165

BLAST of Cla008017 vs. NCBI nr
Match: gi|645271932|ref|XP_008241151.1| (PREDICTED: protein RRP5 homolog [Prunus mume])

HSP 1 Score: 119.8 bits (299), Expect = 4.0e-24
Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = 1

Query: 6   RKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKKGEKVR 65
           +K++D  KFNK SK+PFK  K  ++ A +EA++LQ+EDDVPDFPRGGG  L++++ +++R
Sbjct: 12  KKARDPPKFNKSSKQPFKPNKDRNDTARSEAVALQLEDDVPDFPRGGGSALNRQERDEIR 71

Query: 66  TQGDKEFQNDDLRM-TTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKIT------- 125
            + D EF+ ++  M   K+  M++K  S+ DDL SL  +G+ G LPKYANKIT       
Sbjct: 72  AEVDAEFEAEEREMKKRKKIGMQKKSLSSEDDLGSLFGDGITGKLPKYANKITMKNISAG 131

Query: 126 LKVWPVTVQ-----FAIYIKGGVKSL 139
           +KVW V  +       I + GG++ L
Sbjct: 132 MKVWGVVAEVNEKDLVISLPGGLRGL 157

BLAST of Cla008017 vs. NCBI nr
Match: gi|595810342|ref|XP_007203056.1| (hypothetical protein PRUPE_ppa000079mg [Prunus persica])

HSP 1 Score: 119.8 bits (299), Expect = 4.0e-24
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 1

Query: 6   RKSQDGSKFNKHSKKPFKSKKKTSEIANAEAISLQIEDDVPDFPRGGGGYLSQKKGEKVR 65
           +K++D  KFNK SKKPFK  K  ++ A +EA++LQ+EDDVPDFPRGGG  L++++ +++R
Sbjct: 12  KKARDPPKFNKSSKKPFKPNKDRNDTARSEAVTLQLEDDVPDFPRGGGSALNRQERDEIR 71

Query: 66  TQGDKEFQNDDLRM-TTKRGKMRRKHPSNGDDLESLLNNGVVGNLPKYANKIT------- 125
            + D EF+ ++  M   K+  M++K  S+ DD  SL  +G+ G LPKYANKIT       
Sbjct: 72  AEVDAEFEAEEREMKKRKKIGMQKKSLSSEDDFGSLFGDGITGKLPKYANKITMKNISAG 131

Query: 126 LKVWPVTVQ-----FAIYIKGGVKSL 139
           +KVW V  +       I + GG++ L
Sbjct: 132 MKVWGVVAEVNEKDLVISLPGGLRGL 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RRP5_ARATH2.5e-1848.25rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana GN=RRP5 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0L3Z5_CUCSA6.8e-5574.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G553660 PE=4 SV=1[more]
M5WBV4_PRUPE2.8e-2443.15Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000079mg PE=4 SV=1[more]
A0A067JDG7_JATCU3.7e-2444.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03044 PE=4 SV=1[more]
A0A059DJ38_EUCGR6.2e-2449.19Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02507 PE=4 SV=1[more]
B9T014_RICCO6.9e-2342.86Programmed cell death protein, putative OS=Ricinus communis GN=RCOM_0036500 PE=4... [more]
Match NameE-valueIdentityDescription
gi|778695089|ref|XP_011653922.1|9.8e-5574.00PREDICTED: protein RRP5 homolog [Cucumis sativus][more]
gi|659083148|ref|XP_008442208.1|2.3e-5173.33PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Cucumis melo][more]
gi|1009161447|ref|XP_015898902.1|4.7e-2545.16PREDICTED: rRNA biogenesis protein RRP5 [Ziziphus jujuba][more]
gi|645271932|ref|XP_008241151.1|4.0e-2443.15PREDICTED: protein RRP5 homolog [Prunus mume][more]
gi|595810342|ref|XP_007203056.1|4.0e-2443.15hypothetical protein PRUPE_ppa000079mg [Prunus persica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006396 RNA processing
biological_process GO:0044699 single-organism process
biological_process GO:0001510 RNA methylation
biological_process GO:0006364 rRNA processing
biological_process GO:0009553 embryo sac development
cellular_component GO:0005730 nucleolus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0016020 membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005840 ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0015002 heme-copper terminal oxidase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008017Cla008017.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008017Watermelon (97103) v2wmwmbB297
Cla008017Cucurbita maxima (Rimu)cmawmB636
Cla008017Cucurbita moschata (Rifu)cmowmB627
Cla008017Silver-seed gourdcarwmB0278