Cla006935.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006935
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	SPX domain-containing membrane protein (AHRD V1 ***- F4JMQ7_ARATH)
Location	Chr6 : 145900 .. 146109 (+)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGAGACTTTCGCGTGGGACTTTTAATGGTGGCTTACTTTCCACCGAAGCTGGAACTATAGCTCGAGTGATTGCCGATGGCACGATAACATTGTCAGGGTACTTGGGTGAAAGTAAGCTCTTGAATGTTACCTTACTTCCTTCACTTTTTATTTGTGTATATGCCATTATAGCAACATGTTTTACCTACAACTCTCTTTACTAA

mRNA sequence

ATGTCGTCGAGACTTTCGCGTGGGACTTTTAATGGTGGCTTACTTTCCACCGAAGCTGGAACTATAGCTCGAGTGATTGCCGATGGCACGATAACATTGTCAGGGTACTTGGGTGAAAGTAAGCTCTTGAATGTTACCTTACTTCCTTCACTTTTTATTTGTGTATATGCCATTATAGCAACATGTTTTACCTACAACTCTCTTTACTAA

Coding sequence (CDS)

ATGTCGTCGAGACTTTCGCGTGGGACTTTTAATGGTGGCTTACTTTCCACCGAAGCTGGAACTATAGCTCGAGTGATTGCCGATGGCACGATAACATTGTCAGGGTACTTGGGTGAAAGTAAGCTCTTGAATGTTACCTTACTTCCTTCACTTTTTATTTGTGTATATGCCATTATAGCAACATGTTTTACCTACAACTCTCTTTACTAA

Protein sequence

MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIATCFTYNSLY

Homology

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM2_ARATH (SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g11810 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-26
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGTIARVIAD TITL+G+LG+S LLNVTLLPSL ICV +I+A
Sbjct: 639 MSSRLSRGTYNGGLLSTEAGTIARVIADATITLAGFLGQSMLLNVTLLPSLIICVLSILA 698

Query: 61  TCFTYNSLY 70
           TC+TYNSLY
Sbjct: 699 TCYTYNSLY 707

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM3_ARATH (SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-25
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGTIARVIAD TIT++G+ G + LLNVTLLPSL ICV +I+A
Sbjct: 631 MSSRLSRGTYNGGLLSTEAGTIARVIADATITVAGFFGRNMLLNVTLLPSLVICVLSIVA 690

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 691 TCFTYNSLY 699

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM1_ARATH (SPX domain-containing membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-24
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLS+GT+NGGLLSTEAGT+ARV+AD TITL GYLG   LLN TLLPSL IC+ +I+A
Sbjct: 629 MSSRLSKGTYNGGLLSTEAGTLARVVADATITLGGYLGRGHLLNATLLPSLVICIGSIVA 688

Query: 61  TCFTYNSLY 70
           TC TYNSLY
Sbjct: 689 TCCTYNSLY 697

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM1_ORYSI (SPX domain-containing membrane protein OsI_08463 OS=Oryza sativa subsp. indica GN=OsI_08463 PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-22
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARV AD TIT +GYLG++ LLNVTLLPS  ICV +I+A
Sbjct: 629 MSSRLSRGTYNGGLLSTEAGTLARVAADMTITAAGYLGQNSLLNVTLLPSFVICVASIVA 688

Query: 61  TCFTYNSLY 70
           T  TYNSLY
Sbjct: 689 TFCTYNSLY 697

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM1_ORYSJ (SPX domain-containing membrane protein Os02g45520 OS=Oryza sativa subsp. japonica GN=Os02g0678200 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-22
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARV AD TIT +GYLG++ LLNVTLLPS  ICV +I+A
Sbjct: 629 MSSRLSRGTYNGGLLSTEAGTLARVAADMTITAAGYLGQNSLLNVTLLPSFVICVASIVA 688

Query: 61  TCFTYNSLY 70
           T  TYNSLY
Sbjct: 689 TFCTYNSLY 697

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: A0A0A0K8X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G075110 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.2e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 648 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 707

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 708 TCFTYNSLY 716

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: A0A067H4T8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005307mg PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARVIADGTITLSGYLGES+LLNVTLLPSLFIC+ +I+A
Sbjct: 635 MSSRLSRGTYNGGLLSTEAGTLARVIADGTITLSGYLGESRLLNVTLLPSLFICISSIVA 694

Query: 61  TCFTYNSLY 70
           TC TYNSLY
Sbjct: 695 TCITYNSLY 703

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: A0A103XRC3_CYNCS (Major facilitator superfamily OS=Cynara cardunculus var. scolymus GN=Ccrd_002477 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIAD TITL+GYLGESKLLNVTLLPSL IC+ +I+A
Sbjct: 508 MSSRLSRGTFNGGLLSTEAGTIARVIADATITLAGYLGESKLLNVTLLPSLMICIMSIVA 567

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 568 TCFTYNSLY 576

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: B9GW54_POPTR (SPX domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s12060g PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARV+ADGTITL+GYLGESKLLNVTLLPSL ICV +I+A
Sbjct: 630 MSSRLSRGTYNGGLLSTEAGTLARVVADGTITLAGYLGESKLLNVTLLPSLVICVASIVA 689

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 690 TCFTYNSLY 698

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: B9IC85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07400g PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARVIADGTITLSGYLGE++LLNVTL+PSLFIC+ +IIA
Sbjct: 629 MSSRLSRGTYNGGLLSTEAGTLARVIADGTITLSGYLGENRLLNVTLVPSLFICLSSIIA 688

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 689 TCFTYNSLY 697

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|659120367|ref|XP_008460157.1| (PREDICTED: LOW QUALITY PROTEIN: SPX domain-containing membrane protein At4g22990-like [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA
Sbjct: 626 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 685

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 686 TCFTYNSLY 694

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|778711074|ref|XP_011656680.1| (PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 634 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 693

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 694 TCFTYNSLY 702

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|700191006|gb|KGN46210.1| (hypothetical protein Csa_6G075110 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 648 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 707

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 708 TCFTYNSLY 716

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|778711080|ref|XP_011656682.1| (PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X2 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 626 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 685

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 686 TCFTYNSLY 694

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|778711084|ref|XP_011656683.1| (PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X3 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 585 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 644

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 645 TCFTYNSLY 653

The following BLAST results are available for this feature:

BLAST of Cla006935 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPXM2_ARATH	2.0e-26	84.06	SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g...	[more]
SPXM3_ARATH	2.2e-25	81.16	SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g...	[more]
SPXM1_ARATH	5.5e-24	76.81	SPX domain-containing membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g...	[more]
SPXM1_ORYSI	1.8e-22	76.81	SPX domain-containing membrane protein OsI_08463 OS=Oryza sativa subsp. indica G...	[more]
SPXM1_ORYSJ	1.8e-22	76.81	SPX domain-containing membrane protein Os02g45520 OS=Oryza sativa subsp. japonic...	[more]

BLAST of Cla006935 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8X2_CUCSA	5.2e-29	97.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G075110 PE=4 SV=1	[more]
A0A067H4T8_CITSI	1.4e-26	88.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005307mg PE=4 SV=1	[more]
A0A103XRC3_CYNCS	1.4e-26	89.86	Major facilitator superfamily OS=Cynara cardunculus var. scolymus GN=Ccrd_002477...	[more]
B9GW54_POPTR	1.8e-26	88.41	SPX domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s12060g...	[more]
B9IC85_POPTR	1.8e-26	88.41	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07400g PE=4 SV=1	[more]

BLAST of Cla006935 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120367\|ref\|XP_008460157.1\|	1.2e-29	100.00	PREDICTED: LOW QUALITY PROTEIN: SPX domain-containing membrane protein At4g22990...	[more]
gi\|778711074\|ref\|XP_011656680.1\|	7.5e-29	97.10	PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X1 [Cuc...	[more]
gi\|700191006\|gb\|KGN46210.1\|	7.5e-29	97.10	hypothetical protein Csa_6G075110 [Cucumis sativus]	[more]
gi\|778711080\|ref\|XP_011656682.1\|	7.5e-29	97.10	PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X2 [Cuc...	[more]
gi\|778711084\|ref\|XP_011656683.1\|	7.5e-29	97.10	PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X3 [Cuc...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla006935	Cla006935	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla006935	Cla006935.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla006935.1.cds1	Cla006935.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23510	FAMILY NOT NAMED	coord: 1..69 score: 8.7
None	No IPR available	PANTHER	PTHR23510:SF21	SUBFAMILY NOT NAMED	coord: 1..69 score: 8.7