Cla006935 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006935
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	SPX domain-containing membrane protein (AHRD V1 ***- F4JMQ7_ARATH)
Location	Chr6 : 145900 .. 146109 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGAGACTTTCGCGTGGGACTTTTAATGGTGGCTTACTTTCCACCGAAGCTGGAACTATAGCTCGAGTGATTGCCGATGGCACGATAACATTGTCAGGGTACTTGGGTGAAAGTAAGCTCTTGAATGTTACCTTACTTCCTTCACTTTTTATTTGTGTATATGCCATTATAGCAACATGTTTTACCTACAACTCTCTTTACTAA

mRNA sequence

ATGTCGTCGAGACTTTCGCGTGGGACTTTTAATGGTGGCTTACTTTCCACCGAAGCTGGAACTATAGCTCGAGTGATTGCCGATGGCACGATAACATTGTCAGGGTACTTGGGTGAAAGTAAGCTCTTGAATGTTACCTTACTTCCTTCACTTTTTATTTGTGTATATGCCATTATAGCAACATGTTTTACCTACAACTCTCTTTACTAA

Coding sequence (CDS)

ATGTCGTCGAGACTTTCGCGTGGGACTTTTAATGGTGGCTTACTTTCCACCGAAGCTGGAACTATAGCTCGAGTGATTGCCGATGGCACGATAACATTGTCAGGGTACTTGGGTGAAAGTAAGCTCTTGAATGTTACCTTACTTCCTTCACTTTTTATTTGTGTATATGCCATTATAGCAACATGTTTTACCTACAACTCTCTTTACTAA

Protein sequence

MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIATCFTYNSLY

Homology

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM2_ARATH (SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g11810 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-26
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGTIARVIAD TITL+G+LG+S LLNVTLLPSL ICV +I+A
Sbjct: 639 MSSRLSRGTYNGGLLSTEAGTIARVIADATITLAGFLGQSMLLNVTLLPSLIICVLSILA 698

Query: 61  TCFTYNSLY 70
           TC+TYNSLY
Sbjct: 699 TCYTYNSLY 707

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM3_ARATH (SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-25
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGTIARVIAD TIT++G+ G + LLNVTLLPSL ICV +I+A
Sbjct: 631 MSSRLSRGTYNGGLLSTEAGTIARVIADATITVAGFFGRNMLLNVTLLPSLVICVLSIVA 690

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 691 TCFTYNSLY 699

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM1_ARATH (SPX domain-containing membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-24
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLS+GT+NGGLLSTEAGT+ARV+AD TITL GYLG   LLN TLLPSL IC+ +I+A
Sbjct: 629 MSSRLSKGTYNGGLLSTEAGTLARVVADATITLGGYLGRGHLLNATLLPSLVICIGSIVA 688

Query: 61  TCFTYNSLY 70
           TC TYNSLY
Sbjct: 689 TCCTYNSLY 697

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM1_ORYSI (SPX domain-containing membrane protein OsI_08463 OS=Oryza sativa subsp. indica GN=OsI_08463 PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-22
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARV AD TIT +GYLG++ LLNVTLLPS  ICV +I+A
Sbjct: 629 MSSRLSRGTYNGGLLSTEAGTLARVAADMTITAAGYLGQNSLLNVTLLPSFVICVASIVA 688

Query: 61  TCFTYNSLY 70
           T  TYNSLY
Sbjct: 689 TFCTYNSLY 697

[Close]

BLAST of Cla006935 vs. Swiss-Prot
Match: SPXM1_ORYSJ (SPX domain-containing membrane protein Os02g45520 OS=Oryza sativa subsp. japonica GN=Os02g0678200 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-22
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARV AD TIT +GYLG++ LLNVTLLPS  ICV +I+A
Sbjct: 629 MSSRLSRGTYNGGLLSTEAGTLARVAADMTITAAGYLGQNSLLNVTLLPSFVICVASIVA 688

Query: 61  TCFTYNSLY 70
           T  TYNSLY
Sbjct: 689 TFCTYNSLY 697

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: A0A0A0K8X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G075110 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.2e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 648 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 707

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 708 TCFTYNSLY 716

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: A0A067H4T8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005307mg PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARVIADGTITLSGYLGES+LLNVTLLPSLFIC+ +I+A
Sbjct: 635 MSSRLSRGTYNGGLLSTEAGTLARVIADGTITLSGYLGESRLLNVTLLPSLFICISSIVA 694

Query: 61  TCFTYNSLY 70
           TC TYNSLY
Sbjct: 695 TCITYNSLY 703

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: A0A103XRC3_CYNCS (Major facilitator superfamily OS=Cynara cardunculus var. scolymus GN=Ccrd_002477 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIAD TITL+GYLGESKLLNVTLLPSL IC+ +I+A
Sbjct: 508 MSSRLSRGTFNGGLLSTEAGTIARVIADATITLAGYLGESKLLNVTLLPSLMICIMSIVA 567

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 568 TCFTYNSLY 576

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: B9GW54_POPTR (SPX domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s12060g PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARV+ADGTITL+GYLGESKLLNVTLLPSL ICV +I+A
Sbjct: 630 MSSRLSRGTYNGGLLSTEAGTLARVVADGTITLAGYLGESKLLNVTLLPSLVICVASIVA 689

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 690 TCFTYNSLY 698

[Close]

BLAST of Cla006935 vs. TrEMBL
Match: B9IC85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07400g PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGT+NGGLLSTEAGT+ARVIADGTITLSGYLGE++LLNVTL+PSLFIC+ +IIA
Sbjct: 629 MSSRLSRGTYNGGLLSTEAGTLARVIADGTITLSGYLGENRLLNVTLVPSLFICLSSIIA 688

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 689 TCFTYNSLY 697

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|659120367|ref|XP_008460157.1| (PREDICTED: LOW QUALITY PROTEIN: SPX domain-containing membrane protein At4g22990-like [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA
Sbjct: 626 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 685

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 686 TCFTYNSLY 694

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|778711074|ref|XP_011656680.1| (PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 634 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 693

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 694 TCFTYNSLY 702

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|700191006|gb|KGN46210.1| (hypothetical protein Csa_6G075110 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 648 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 707

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 708 TCFTYNSLY 716

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|778711080|ref|XP_011656682.1| (PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X2 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 626 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 685

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 686 TCFTYNSLY 694

[Close]

BLAST of Cla006935 vs. NCBI nr
Match: gi|778711084|ref|XP_011656683.1| (PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X3 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLGESKLLNVTLLPSLFICVYAIIA 60
           MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYL ESKLLN+TLLPSLFICVYAIIA
Sbjct: 585 MSSRLSRGTFNGGLLSTEAGTIARVIADGTITLSGYLSESKLLNITLLPSLFICVYAIIA 644

Query: 61  TCFTYNSLY 70
           TCFTYNSLY
Sbjct: 645 TCFTYNSLY 653

The following BLAST results are available for this feature:

BLAST of Cla006935 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPXM2_ARATH	2.0e-26	84.06	SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g...	[more]
SPXM3_ARATH	2.2e-25	81.16	SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g...	[more]
SPXM1_ARATH	5.5e-24	76.81	SPX domain-containing membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g...	[more]
SPXM1_ORYSI	1.8e-22	76.81	SPX domain-containing membrane protein OsI_08463 OS=Oryza sativa subsp. indica G...	[more]
SPXM1_ORYSJ	1.8e-22	76.81	SPX domain-containing membrane protein Os02g45520 OS=Oryza sativa subsp. japonic...	[more]

BLAST of Cla006935 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8X2_CUCSA	5.2e-29	97.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G075110 PE=4 SV=1	[more]
A0A067H4T8_CITSI	1.4e-26	88.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005307mg PE=4 SV=1	[more]
A0A103XRC3_CYNCS	1.4e-26	89.86	Major facilitator superfamily OS=Cynara cardunculus var. scolymus GN=Ccrd_002477...	[more]
B9GW54_POPTR	1.8e-26	88.41	SPX domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s12060g...	[more]
B9IC85_POPTR	1.8e-26	88.41	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07400g PE=4 SV=1	[more]

BLAST of Cla006935 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120367\|ref\|XP_008460157.1\|	1.2e-29	100.00	PREDICTED: LOW QUALITY PROTEIN: SPX domain-containing membrane protein At4g22990...	[more]
gi\|778711074\|ref\|XP_011656680.1\|	7.5e-29	97.10	PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X1 [Cuc...	[more]
gi\|700191006\|gb\|KGN46210.1\|	7.5e-29	97.10	hypothetical protein Csa_6G075110 [Cucumis sativus]	[more]
gi\|778711080\|ref\|XP_011656682.1\|	7.5e-29	97.10	PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X2 [Cuc...	[more]
gi\|778711084\|ref\|XP_011656683.1\|	7.5e-29	97.10	PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform X3 [Cuc...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006935	Cla006935.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23510	FAMILY NOT NAMED	coord: 1..69 score: 8.7
None	No IPR available	PANTHER	PTHR23510:SF21	SUBFAMILY NOT NAMED	coord: 1..69 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006935	Cucumber (Gy14) v2	cgybwmB259
Cla006935	Cucumber (Gy14) v2	cgybwmB501
Cla006935	Melon (DHL92) v3.6.1	medwmB138
Cla006935	Melon (DHL92) v3.6.1	medwmB473
Cla006935	Silver-seed gourd	carwmB0220
Cla006935	Silver-seed gourd	carwmB0221
Cla006935	Silver-seed gourd	carwmB0619
Cla006935	Silver-seed gourd	carwmB1079
Cla006935	Cucumber (Chinese Long) v3	cucwmB285
Cla006935	Cucumber (Chinese Long) v3	cucwmB291
Cla006935	Cucumber (Chinese Long) v3	cucwmB562
Cla006935	Watermelon (97103) v2	wmwmbB398
Cla006935	Watermelon (97103) v2	wmwmbB405
Cla006935	Watermelon (97103) v2	wmwmbB407
Cla006935	Wax gourd	wgowmB650
Cla006935	Watermelon (97103) v1	wmwmB137
Cla006935	Watermelon (97103) v1	wmwmB140
Cla006935	Cucumber (Gy14) v1	cgywmB484
Cla006935	Cucumber (Gy14) v1	cgywmB666
Cla006935	Cucurbita maxima (Rimu)	cmawmB251
Cla006935	Cucurbita maxima (Rimu)	cmawmB326
Cla006935	Cucurbita maxima (Rimu)	cmawmB353
Cla006935	Cucurbita maxima (Rimu)	cmawmB359
Cla006935	Cucurbita maxima (Rimu)	cmawmB810
Cla006935	Cucurbita maxima (Rimu)	cmawmB874
Cla006935	Cucurbita moschata (Rifu)	cmowmB241
Cla006935	Cucurbita moschata (Rifu)	cmowmB320
Cla006935	Cucurbita moschata (Rifu)	cmowmB348
Cla006935	Cucurbita moschata (Rifu)	cmowmB354
Cla006935	Cucurbita moschata (Rifu)	cmowmB801
Cla006935	Cucurbita moschata (Rifu)	cmowmB862
Cla006935	Melon (DHL92) v3.5.1	mewmB140
Cla006935	Melon (DHL92) v3.5.1	mewmB484
Cla006935	Melon (DHL92) v3.5.1	mewmB488
Cla006935	Watermelon (Charleston Gray)	wcgwmB309
Cla006935	Watermelon (Charleston Gray)	wcgwmB314
Cla006935	Watermelon (Charleston Gray)	wcgwmB345
Cla006935	Cucumber (Chinese Long) v2	cuwmB276
Cla006935	Cucumber (Chinese Long) v2	cuwmB537
Cla006935	Cucurbita pepo (Zucchini)	cpewmB162
Cla006935	Cucurbita pepo (Zucchini)	cpewmB342
Cla006935	Cucurbita pepo (Zucchini)	cpewmB625
Cla006935	Cucurbita pepo (Zucchini)	cpewmB854
Cla006935	Bottle gourd (USVL1VR-Ls)	lsiwmB041
Cla006935	Bottle gourd (USVL1VR-Ls)	lsiwmB385